Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Forward (+)

62399335 .. 62400075

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0450800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAAGAGAGCAAGAGAAGATGAGCAGCAAACCCAGGATTTGGTCAATTGCTTGATGCTACTGTCCAAAGTAGATCGGAACCATTCCTCCTCAATCAGAGAACAAAACTCCTCCGGCCGCGTCTTTGCTTGCAAGACGTGTAACCGGGAGTTCTCATCGTTCCAGGCCCTCGGAGGCCACAGAGCGAGCCACAAGAAGCCGAAACTAGACGGTGGTGCCGCGGATCTCTTACAGCTGGCCCAGCCTTCGTTGCCGGCGAAGCCCAAGGCGCACGAGTGCCCGATCTGCGGGATGGAATTCCCAATCGGGCAGGCGCTTGGGGGACACATGAGGAGACATAGAGACGTTATGAGTTCTGCGGCGGAGCGGATTAGGGCGGCGGCGGTGCCGGTGTTGAAGAAATCGAATAGTAGTAAAAGGGTGTCGTGCCTGAATCTGGACTTGAATTTGGCGCCGCCCGGTTATCATTTGATATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

159

Amino Acids

17.43

Weight (kDa)

9.69

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	41 - 67	5.1e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	90 - 115	9.6e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	215, 385, 451
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccBSI	CCGCTC	1 cut(s)	367
AccII	CGCG	2 cut(s)	120, 221
AclWI	GGATC	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	2 cut(s)	296, 445
AcyI	GRCGYC	1 cut(s)	452
AfiI	CCNNNNNNNGG	3 cut(s)	40, 287, 436
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	397, 445
AjiI	CACGTC	1 cut(s)	138
AjnI	CCWGG	2 cut(s)	33, 162
AloI	GAACNNNNNNTCC	2 cut(s)	71, 103
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Alw26I	GTCTC	2 cut(s)	328, 336
AlwI	GGATC	1 cut(s)	231
AoxI	GGCC	4 cut(s)	115, 165, 175, 237
ApeKI	GCWGC	1 cut(s)	25
ApoI	RAATTY	2 cut(s)	296, 445
AspLEI	GCGC	3 cut(s)	271, 316, 454
AspS9I	GGNCC	2 cut(s)	166, 238
AsuC2I	CCSGG	2 cut(s)	146, 459
BaeGI	GKGCMC	1 cut(s)	281
BanI	GGYRCC	3 cut(s)	215, 385, 451
BauI	CACGAG	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	286
BciT130I	CCWGG	2 cut(s)	35, 164
BcnI	CCSGG	2 cut(s)	146, 459
BcoDI	GTCTC	2 cut(s)	328, 336
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	2 cut(s)	317, 455
BisI	GCNGC	7 cut(s)	26, 118, 219, 360, 378, 381, 455
BlsI	GCNGC	7 cut(s)	27, 119, 220, 361, 379, 382, 456
Bme1390I	CCNGG	4 cut(s)	35, 146, 164, 459
BmgBI	CACGTC	1 cut(s)	138
BmgT120I	GGNCC	2 cut(s)	166, 238
BmiI	GGNNCC	4 cut(s)	80, 217, 387, 453
BmrFI	CCNGG	4 cut(s)	35, 146, 164, 459
BmsI	GCATC	1 cut(s)	45
BpuMI	CCSGG	2 cut(s)	146, 459
BsaHI	GRCGYC	1 cut(s)	452
BsaJI	CCNNGG	4 cut(s)	33, 169, 219, 264
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 287, 436
Bse118I	RCCGGY	2 cut(s)	253, 388
BseBI	CCWGG	2 cut(s)	35, 164
BseDI	CCNNGG	4 cut(s)	33, 169, 219, 264
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	3 cut(s)	40, 287, 436
BseRI	GAGGAG	3 cut(s)	79, 100, 346
BseSI	GKGCMC	1 cut(s)	281
BseX3I	CGGCCG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	37
BseYI	CCCAGC	1 cut(s)	240
Bsh1236I	CGCG	2 cut(s)	120, 221
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	4 cut(s)	117, 167, 177, 239
BshNI	GGYRCC	3 cut(s)	215, 385, 451
BsiEI	CGRYCG	1 cut(s)	118
BsiSI	CCGG	5 cut(s)	114, 145, 254, 389, 459
BslFI	GGGAC	1 cut(s)	336
BslI	CCNNNNNNNGG	3 cut(s)	40, 287, 436
BsmAI	GTCTC	2 cut(s)	328, 336
BsmBI	CGTCTC	1 cut(s)	336
BsmFI	GGGAC	1 cut(s)	336
BsnI	GGCC	4 cut(s)	117, 167, 177, 239
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	3 cut(s)	73, 223, 282
BspANI	GGCC	4 cut(s)	117, 167, 177, 239
BspFNI	CGCG	2 cut(s)	120, 221
BspLI	GGNNCC	4 cut(s)	80, 217, 387, 453
BspPI	GGATC	1 cut(s)	231
BspT107I	GGYRCC	3 cut(s)	215, 385, 451
BsrBI	CCGCTC	1 cut(s)	367
BsrFI	RCCGGY	2 cut(s)	253, 388
BssAI	RCCGGY	2 cut(s)	253, 388
BssECI	CCNNGG	4 cut(s)	33, 169, 219, 264
BssMI	GATC	3 cut(s)	73, 223, 282
BssNI	GRCGYC	1 cut(s)	452
BssSI	CACGAG	1 cut(s)	272
BssT1I	CCWWGG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	272
Bst2UI	CCWGG	2 cut(s)	35, 164
Bst4CI	ACNGT	2 cut(s)	63, 212
BstACI	GRCGYC	1 cut(s)	452
BstC8I	GCNNGC	5 cut(s)	130, 187, 237, 255, 312
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	297
BstFNI	CGCG	2 cut(s)	120, 221
BstH2I	RGCGCY	2 cut(s)	317, 455
BstHHI	GCGC	3 cut(s)	271, 316, 454
BstKTI	GATC	3 cut(s)	76, 226, 285
BstMAI	GTCTC	2 cut(s)	328, 336
BstMBI	GATC	3 cut(s)	73, 223, 282
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	5 cut(s)	241, 250, 259, 268, 285
BstNI	CCWGG	2 cut(s)	35, 164
BstSCI	CCNGG	4 cut(s)	33, 144, 162, 457
BstSLI	GKGCMC	1 cut(s)	281
BstUI	CGCG	2 cut(s)	120, 221
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BstZI	CGGCCG	1 cut(s)	115
BsuRI	GGCC	4 cut(s)	117, 167, 177, 239
BtgI	CCRYGG	1 cut(s)	219
BtrI	CACGTC	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	297
Cac8I	GCNNGC	5 cut(s)	130, 187, 237, 255, 312
CfoI	GCGC	3 cut(s)	271, 316, 454
Cfr10I	RCCGGY	2 cut(s)	253, 388
Cfr13I	GGNCC	2 cut(s)	166, 238
Cfr42I	CCGCGG	1 cut(s)	222
CseI	GACGC	1 cut(s)	109
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	9 cut(s)	117, 167, 177, 189, 199, 235, 239, 244, 262
CviKI_1	RGCY	9 cut(s)	117, 167, 177, 189, 199, 235, 239, 244, 262
DinI	GGCGCC	1 cut(s)	453
DpnI	GATC	3 cut(s)	75, 225, 284
DpnII	GATC	3 cut(s)	73, 223, 282
EaeI	YGGCCR	1 cut(s)	115
EagI	CGGCCG	1 cut(s)	115
EciI	GGCGGA	1 cut(s)	377
EclXI	CGGCCG	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	264
Eco32I	GATATC	1 cut(s)	474
Eco52I	CGGCCG	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	296
EcoRII	CCWGG	2 cut(s)	33, 162
EcoRV	GATATC	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	264
EgeI	GGCGCC	1 cut(s)	453
EheI	GGCGCC	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	336
FaeI	CATG	1 cut(s)	331
FaiI	YATR	3 cut(s)	329, 339, 350
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	1 cut(s)	327
FauI	CCCGC	1 cut(s)	281
Fnu4HI	GCNGC	7 cut(s)	26, 118, 219, 360, 378, 381, 455
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	7 cut(s)	26, 118, 219, 360, 378, 381, 455
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	3 cut(s)	270, 315, 453
GluI	GCNGC	7 cut(s)	26, 118, 219, 360, 378, 381, 455
GsaI	CCCAGC	1 cut(s)	244
HaeII	RGCGCY	2 cut(s)	317, 455
HaeIII	GGCC	4 cut(s)	117, 167, 177, 239
HapII	CCGG	5 cut(s)	114, 145, 254, 389, 459
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	3 cut(s)	271, 316, 454
Hin1I	GRCGYC	1 cut(s)	452
Hin1II	CATG	1 cut(s)	331
Hin6I	GCGC	3 cut(s)	269, 314, 452
HinP1I	GCGC	3 cut(s)	269, 314, 452
HinfI	GANTC	1 cut(s)	433
HpaII	CCGG	5 cut(s)	114, 145, 254, 389, 459
Hpy188I	TCNGA	3 cut(s)	78, 98, 173
Hpy188III	TCNNGA	1 cut(s)	437
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	2 cut(s)	63, 212
HpyCH4IV	ACGT	2 cut(s)	137, 345
HpyCH4V	TGCA	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	5 cut(s)	241, 250, 259, 268, 285
HpySE526I	ACGT	2 cut(s)	137, 345
Hsp92I	GRCGYC	1 cut(s)	452
Hsp92II	CATG	1 cut(s)	331
HspAI	GCGC	3 cut(s)	269, 314, 452
KasI	GGCGCC	1 cut(s)	451
KroI	GCCGGC	1 cut(s)	253
KroNI	GCCGGC	1 cut(s)	255
KspI	CCGCGG	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	73, 223, 282
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	2 cut(s)	137, 345
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	3 cut(s)	75, 225, 284
MbiI	CCGCTC	1 cut(s)	367
MboI	GATC	3 cut(s)	73, 223, 282
MboII	GAAGA	3 cut(s)	16, 29, 409
MfeI	CAATTG	1 cut(s)	46
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	3 cut(s)	46, 296, 445
Mly113I	GGCGCC	1 cut(s)	452
MnlI	CCTC	6 cut(s)	97, 100, 121, 167, 179, 324
MroNI	GCCGGC	1 cut(s)	253
MseI	TTAA	1 cut(s)	478
MspA1I	CMGCKG	2 cut(s)	221, 235
MspI	CCGG	5 cut(s)	114, 145, 254, 389, 459
MspR9I	CCNGG	4 cut(s)	35, 146, 164, 459
MunI	CAATTG	1 cut(s)	46
MvaI	CCWGG	2 cut(s)	35, 164
MvnI	CGCG	2 cut(s)	120, 221
MwoI	GCNNNNNNNGC	5 cut(s)	241, 250, 259, 268, 285
NaeI	GCCGGC	1 cut(s)	255
NarI	GGCGCC	1 cut(s)	452
NciI	CCSGG	2 cut(s)	146, 459
NdeII	GATC	3 cut(s)	73, 223, 282
NgoMIV	GCCGGC	1 cut(s)	253
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	4 cut(s)	80, 217, 387, 453
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
PdiI	GCCGGC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	433
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	7 cut(s)	27, 119, 220, 361, 379, 382, 456
PluTI	GGCGCC	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	33, 162
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	2 cut(s)	33, 162
PspN4I	GGNNCC	4 cut(s)	80, 217, 387, 453
PspPI	GGNCC	2 cut(s)	166, 238
PsuI	RGATCY	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	235
SacII	CCGCGG	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	478
SatI	GCNGC	7 cut(s)	26, 118, 219, 360, 378, 381, 455
Sau3AI	GATC	3 cut(s)	73, 223, 282
Sau96I	GGNCC	2 cut(s)	166, 238
ScrFI	CCNGG	4 cut(s)	35, 146, 164, 459
SduI	GDGCHC	1 cut(s)	281
SetI	ASST	3 cut(s)	140, 237, 348
SfaNI	GCATC	1 cut(s)	45
SfoI	GGCGCC	1 cut(s)	453
Sfr303I	CCGCGG	1 cut(s)	222
SgrBI	CCGCGG	1 cut(s)	222
Sse9I	AATT	3 cut(s)	46, 296, 445
SspDI	GGCGCC	1 cut(s)	451
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	4 cut(s)	33, 144, 162, 457
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	63, 212
TaiI	ACGT	2 cut(s)	140, 348
TaqI	TCGA	1 cut(s)	404
TasI	AATT	3 cut(s)	46, 296, 445
TauI	GCSGC	6 cut(s)	120, 221, 362, 380, 383, 457
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	1 cut(s)	478
Tru9I	TTAA	1 cut(s)	478
TseI	GCWGC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	40
XapI	RAATTY	2 cut(s)	296, 445
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.