Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Forward (+)

62401713 .. 62402390

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0450900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGACTGTGGAAGATCAAGTTCATATTGGTGTGATTCTAGACATGGGATCACTGGAAGGAAAGATTGTTCTCAGCTGCATTTCAATGGCCCTATCTGATTTTTACCAACTGCATAATAACTACAGCACAAGAGTAATTCTCCACAATAAGGATTCCAAGGGCAAACCTCTACCTGCTATGTCAGCTGCTCTTAGTCTGTTGGATAACATCAAAGTGGAAGCAATAATTGGTGCACGAACTAAAACAGAAGCAAACCTTTTGGCAGAATTAGGAGAAGCGGCTCAACTCCCCGTCATGTCTTTTTCTCCTTCCTTCACTGACAATAAATATGCCTTCTTTGGTTGTGGTGCGGTGTTCTGCTCGTCACCAATGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

125

Amino Acids

13.47

Weight (kDa)

5.48

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	24 - 112	8.8e-11	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	181
AciI	CCGC	2 cut(s)	278, 350
AclWI	GGATC	1 cut(s)	55
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	84
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
AluBI	AGCT	2 cut(s)	75, 185
AluI	AGCT	2 cut(s)	75, 185
Alw21I	GWGCWC	1 cut(s)	235
Alw44I	GTGCAC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	87
ApaLI	GTGCAC	1 cut(s)	231
ApeKI	GCWGC	2 cut(s)	75, 185
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	2 cut(s)	62, 172
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	121
BfuAI	ACCTGC	1 cut(s)	181
BisI	GCNGC	3 cut(s)	76, 186, 279
BlsI	GCNGC	3 cut(s)	77, 187, 280
BmgT120I	GGNCC	1 cut(s)	88
BplI	GAGNNNNNCTC	2 cut(s)	123, 155
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	2 cut(s)	62, 172
BshFI	GGCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	148
BsnI	GGCC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	13, 47
BspACI	CCGC	2 cut(s)	278, 350
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	84
BspMI	ACCTGC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	13, 47
BssT1I	CCWWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	71, 191
BstKTI	GATC	2 cut(s)	16, 50
BstMBI	GATC	2 cut(s)	13, 47
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	62, 172
BsuRI	GGCC	1 cut(s)	89
BtsIMutI	CAGTG	2 cut(s)	50, 315
BveI	ACCTGC	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	88
CviAII	CATG	2 cut(s)	43, 295
CviJI	RGCY	4 cut(s)	75, 89, 185, 281
CviKI_1	RGCY	4 cut(s)	75, 89, 185, 281
DdeI	CTNAG	2 cut(s)	71, 191
DpnI	GATC	2 cut(s)	15, 49
DpnII	GATC	2 cut(s)	13, 47
Eco130I	CCWWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	46, 298
FaiI	YATR	6 cut(s)	24, 44, 114, 179, 296, 330
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	2 cut(s)	42, 294
Fnu4HI	GCNGC	3 cut(s)	76, 186, 279
Fsp4HI	GCNGC	3 cut(s)	76, 186, 279
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	3 cut(s)	76, 186, 279
HaeIII	GGCC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	46, 298
HinfI	GANTC	2 cut(s)	34, 152
HphI	GGTGA	1 cut(s)	357
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	4 cut(s)	50, 318, 322, 343
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	3 cut(s)	78, 112, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	2 cut(s)	71, 191
Hsp92II	CATG	2 cut(s)	46, 298
Kzo9I	GATC	2 cut(s)	13, 47
LpnPI	CCDG	2 cut(s)	38, 186
Lsp1109I	GCAGC	2 cut(s)	62, 172
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	363
MalI	GATC	2 cut(s)	15, 49
MboI	GATC	2 cut(s)	13, 47
MboII	GAAGA	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	3 cut(s)	135, 225, 266
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	1 cut(s)	177
MslI	CAYNNNNRTG	3 cut(s)	27, 83, 212
MspA1I	CMGCKG	2 cut(s)	75, 185
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeII	GATC	2 cut(s)	13, 47
NlaIII	CATG	2 cut(s)	46, 298
NmuCI	GTSAC	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	34, 152
PkrI	GCNGC	3 cut(s)	77, 187, 280
PspPI	GGNCC	1 cut(s)	88
PvuII	CAGCTG	2 cut(s)	75, 185
RseI	CAYNNNNRTG	3 cut(s)	27, 83, 212
SatI	GCNGC	3 cut(s)	76, 186, 279
Sau3AI	GATC	2 cut(s)	13, 47
Sau96I	GGNCC	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	5 cut(s)	77, 169, 175, 187, 258
SfcI	CTRYAG	1 cut(s)	121
SmiMI	CAYNNNNRTG	3 cut(s)	27, 83, 212
Sse9I	AATT	3 cut(s)	135, 225, 266
SsiI	CCGC	2 cut(s)	278, 350
SspMI	CTAG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	7
TasI	AATT	3 cut(s)	135, 225, 266
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	2 cut(s)	34, 152
TscAI	CASTG	2 cut(s)	57, 322
TseFI	GTSAC	1 cut(s)	363
TseI	GCWGC	2 cut(s)	75, 185
Tsp45I	GTSAC	1 cut(s)	363
TspDTI	ATGAA	1 cut(s)	11
TspRI	CASTG	2 cut(s)	57, 322
VneI	GTGCAC	1 cut(s)	231
XbaI	TCTAGA	1 cut(s)	37
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.