Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Reverse (-)

57306607 .. 57307480

Gene Structure 874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG418900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCAGCGGTGCATTCGAGCACGACGCCACCGACGTCGGTCCTTTGGTCCATGCCCACCACTGGCTGGTTATCCACTTCGTCAACGTACGGATAATCCTAAGATTATGGCTTATGCCCGTTCGGCCGTGGAACACTACAACAAGCAAAAGAATTCCCAACTGCAATTTGTGAGAGCAGTAAAGGCAAGTTGCCAGGAGTCCTACAATTGGGGGCACTTCTATTATCTAACGCTGGAGGCAGTCGATGCTGAAGTTGTCAAAATGTACCAAGCAATAGTACTTAATGACGATCTTGATGACCCAAAGCTCTGCCTGTTTGGTCTTGTTGCTGATAATGGCAATGGGAGTTTGTTAAAATTAATTCATAACGGTCATGATCGTTATGTTTTCTGCGGACTTGACACCCGGAATCATCTACCAACGAAAATTGAATATCCTCTCAAAGAACAGATAAAGGCTCCAATGCAGACCAAGATATTTTCTCAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

163

Amino Acids

18.83

Weight (kDa)

9.44

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	31 - 97	6.4e-08	Aspartic acid proteinase inhibitor
Cystatin	PF00031	31 - 104	9.7e-06	Cystatin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	37
AccB7I	CCANNNNNTGG	1 cut(s)	65
AciI	CCGC	2 cut(s)	7, 393
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	270
AcyI	GRCGYC	2 cut(s)	25, 34
AfaI	GTAC	3 cut(s)	88, 266, 279
AfiI	CCNNNNNNNGG	3 cut(s)	61, 65, 207
AgsI	TTSAA	1 cut(s)	431
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	1 cut(s)	307
AluI	AGCT	1 cut(s)	307
Alw21I	GWGCWC	1 cut(s)	22
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	151
AseI	ATTAAT	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	39, 47
AsuC2I	CCSGG	1 cut(s)	406
AvaII	GGWCC	2 cut(s)	39, 47
BaeGI	GKGCMC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	16
BceAI	ACGGC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	406
BglI	GCCNNNNNGGC	1 cut(s)	122
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmcAI	AGTACT	1 cut(s)	279
Bme1390I	CCNGG	2 cut(s)	194, 406
Bme18I	GGWCC	2 cut(s)	39, 47
BmgT120I	GGNCC	2 cut(s)	39, 47
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	2 cut(s)	194, 406
BmsI	GCATC	1 cut(s)	235
BoxI	GACNNNNGTC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	406
BsaHI	GRCGYC	2 cut(s)	25, 34
BsaJI	CCNNGG	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 65, 207
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	126
BseLI	CCNNNNNNNGG	3 cut(s)	61, 65, 207
BseMI	GCAATG	1 cut(s)	346
BseNI	ACTGG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	216
BseX3I	CGGCCG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	406
BsiWI	CGTACG	1 cut(s)	86
BslI	CCNNNNNNNGG	3 cut(s)	61, 65, 207
BsmI	GAATGC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	22, 216
Bsp143I	GATC	2 cut(s)	289, 376
BspACI	CCGC	2 cut(s)	7, 393
BspANI	GGCC	1 cut(s)	125
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	289, 376
BssNI	GRCGYC	2 cut(s)	25, 34
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	371
BstACI	GRCGYC	2 cut(s)	25, 34
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstDEI	CTNAG	2 cut(s)	99, 483
BstDSI	CCRYGG	1 cut(s)	126
BstKTI	GATC	2 cut(s)	292, 379
BstMBI	GATC	2 cut(s)	289, 376
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 182, 245
BstNI	CCWGG	1 cut(s)	194
BstPAI	GACNNNNGTC	1 cut(s)	37
BstSCI	CCNGG	2 cut(s)	192, 404
BstSLI	GKGCMC	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	16
BstZI	CGGCCG	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	59
CciI	TCATGA	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	39, 47
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	3 cut(s)	87, 265, 278
CviAII	CATG	2 cut(s)	51, 374
CviJI	RGCY	5 cut(s)	65, 110, 125, 307, 458
CviKI_1	RGCY	5 cut(s)	65, 110, 125, 307, 458
CviQI	GTAC	3 cut(s)	87, 265, 278
DdeI	CTNAG	2 cut(s)	99, 483
DpnI	GATC	2 cut(s)	291, 378
DpnII	GATC	2 cut(s)	289, 376
EaeI	YGGCCR	1 cut(s)	123
EagI	CGGCCG	1 cut(s)	123
EclXI	CGGCCG	1 cut(s)	123
Eco47I	GGWCC	2 cut(s)	39, 47
Eco52I	CGGCCG	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	270
EcoRI	GAATTC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	192
FaeI	CATG	2 cut(s)	54, 377
FaiI	YATR	6 cut(s)	52, 107, 114, 366, 375, 384
FatI	CATG	2 cut(s)	50, 373
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	1 cut(s)	406
HgaI	GACGC	1 cut(s)	33
Hin1I	GRCGYC	2 cut(s)	25, 34
Hin1II	CATG	2 cut(s)	54, 377
HincII	GTYRAC	1 cut(s)	83
HindII	GTYRAC	1 cut(s)	83
HinfI	GANTC	2 cut(s)	197, 409
HpaII	CCGG	1 cut(s)	406
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188III	TCNNGA	2 cut(s)	293, 374
Hpy8I	GTNNAC	1 cut(s)	83
Hpy99I	CGWCG	3 cut(s)	27, 36, 39
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	2 cut(s)	34, 85
HpyCH4V	TGCA	4 cut(s)	4, 12, 163, 466
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 182, 245
HpyF3I	CTNAG	2 cut(s)	99, 483
HpySE526I	ACGT	2 cut(s)	34, 85
Hsp92I	GRCGYC	2 cut(s)	25, 34
Hsp92II	CATG	2 cut(s)	54, 377
Kzo9I	GATC	2 cut(s)	289, 376
LmnI	GCTCC	1 cut(s)	463
LpnPI	CCDG	8 cut(s)	47, 51, 179, 206, 218, 326, 419, 470
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	235
MaeII	ACGT	2 cut(s)	34, 85
MalI	GATC	2 cut(s)	291, 378
MboI	GATC	2 cut(s)	289, 376
MfeI	CAATTG	1 cut(s)	205
MhlI	GDGCHC	2 cut(s)	22, 216
MluCI	AATT	6 cut(s)	151, 164, 205, 356, 360, 426
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	2 cut(s)	229, 447
MseI	TTAA	3 cut(s)	282, 353, 359
MspA1I	CMGCKG	1 cut(s)	7
MspI	CCGG	1 cut(s)	406
MspR9I	CCNGG	2 cut(s)	194, 406
MunI	CAATTG	1 cut(s)	205
Mva1269I	GAATGC	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	122, 182, 245
NciI	CCSGG	1 cut(s)	406
NdeII	GATC	2 cut(s)	289, 376
NlaIII	CATG	2 cut(s)	54, 377
NlaIV	GGNNCC	1 cut(s)	459
PagI	TCATGA	1 cut(s)	373
PcsI	WCGNNNNNNNCGW	2 cut(s)	28, 31
PctI	GAATGC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	409
Pfl23II	CGTACG	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PshAI	GACNNNNGTC	1 cut(s)	37
PshBI	ATTAAT	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspLI	CGTACG	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	2 cut(s)	39, 47
RsaI	GTAC	3 cut(s)	88, 266, 279
RsaNI	GTAC	3 cut(s)	87, 265, 278
SaqAI	TTAA	3 cut(s)	282, 353, 359
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	289, 376
Sau96I	GGNCC	2 cut(s)	39, 47
ScaI	AGTACT	1 cut(s)	279
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	194, 406
SduI	GDGCHC	2 cut(s)	22, 216
SetI	ASST	3 cut(s)	37, 88, 309
SfaNI	GCATC	1 cut(s)	235
SinI	GGWCC	2 cut(s)	39, 47
Sse9I	AATT	6 cut(s)	151, 164, 205, 356, 360, 426
SsiI	CCGC	2 cut(s)	7, 393
StyD4I	CCNGG	2 cut(s)	192, 404
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	2 cut(s)	37, 88
TaqI	TCGA	2 cut(s)	16, 243
TaqII	GACCGA	1 cut(s)	27
TasI	AATT	6 cut(s)	151, 164, 205, 356, 360, 426
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	3 cut(s)	282, 353, 359
Tru9I	TTAA	3 cut(s)	282, 353, 359
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	353
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	66
Van91I	CCANNNNNTGG	1 cut(s)	65
VpaK11BI	GGWCC	2 cut(s)	39, 47
VspI	ATTAAT	1 cut(s)	359
XapI	RAATTY	1 cut(s)	151
ZraI	GACGTC	1 cut(s)	35
ZrmI	AGTACT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.