Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Reverse (-)

62434700 .. 62435155

Gene Structure 456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0451300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAAGAAGAATCATATGCGACTGAACAAGTACTCGACGAGGAGGATCAATATCGCTACAAGCGATTAACTTCTTTCTTGCAGGTTGATCGCTCGTTCTTGACGCCGTGGTCTGGGAACCCTAGCAGCTTCGGTACCACCGGTGATGTTAGGCCAAGTATGAGACCGAAAGAAGAGTTCATGAGGTTTCAACCTGGTTCGTTCTTTAGTTATGAGATTGGCAATTTTGTGGGTAAAGCCTGTACAGAAGAGGAGAATGGAGCCTCAGAGAAGAAGAAACAAAGCGTCTGTTCTAGTCCCTCTCTTTGCAAAGATCATCCTAGCAGCTTAGCCATGGTTGGGGGGAATGGCCATGGGCATATGAAGCCAGTGCTCGCAGATGAGAAGATACAAAAGCCCTCAAGACAAAGCCACAAGGAAGAACATAAACCTGCTTCTCTAGCTTCCACAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

151

Amino Acids

16.93

Weight (kDa)

6.22

Isoelectric Point (pI)

62.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	109
Acc36I	ACCTGC	2 cut(s)	73, 439
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	134
AclWI	GGATC	1 cut(s)	54
AcoI	YGGCCR	1 cut(s)	349
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	3 cut(s)	33, 136, 244
AfiI	CCNNNNNNNGG	2 cut(s)	113, 339
AgeI	ACCGGT	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	3 cut(s)	129, 327, 443
AluI	AGCT	3 cut(s)	129, 327, 443
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	54
AoxI	GGCC	2 cut(s)	152, 349
ApeKI	GCWGC	2 cut(s)	126, 324
AsiGI	ACCGGT	1 cut(s)	140
Asp718I	GGTACC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	138, 336
BceAI	ACGGC	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	4 cut(s)	123, 294, 321, 440
BfuAI	ACCTGC	2 cut(s)	73, 439
BisI	GCNGC	2 cut(s)	127, 325
BlpI	GCTNAGC	1 cut(s)	328
BlsI	GCNGC	2 cut(s)	128, 326
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	195
BmiI	GGNNCC	3 cut(s)	119, 136, 262
BmrFI	CCNGG	1 cut(s)	195
Bpu1102I	GCTNAGC	1 cut(s)	328
BpuEI	CTTGAG	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	51
BsaHI	GRCGYC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	3 cut(s)	107, 333, 352
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 339
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	368
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	3 cut(s)	107, 333, 352
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	113, 339
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	368
BseRI	GAGGAG	2 cut(s)	56, 266
BseXI	GCAGC	2 cut(s)	138, 336
BshFI	GGCC	2 cut(s)	154, 351
BshNI	GGYRCC	1 cut(s)	134
BshTI	ACCGGT	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	2 cut(s)	113, 339
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	2 cut(s)	154, 351
Bso31I	GGTCTC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp1407I	TGTACA	1 cut(s)	242
Bsp143I	GATC	3 cut(s)	46, 88, 313
Bsp1720I	GCTNAGC	1 cut(s)	328
Bsp19I	CCATGG	2 cut(s)	333, 352
BspANI	GGCC	2 cut(s)	154, 351
BspCNI	CTCAG	1 cut(s)	278
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	119, 136, 262
BspMI	ACCTGC	2 cut(s)	73, 439
BspPI	GGATC	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	157
BsrFI	RCCGGY	1 cut(s)	140
BsrGI	TGTACA	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	3 cut(s)	107, 333, 352
BssMI	GATC	3 cut(s)	46, 88, 313
BssNI	GRCGYC	1 cut(s)	104
BssT1I	CCWWGG	2 cut(s)	333, 352
Bst2UI	CCWGG	1 cut(s)	195
Bst6I	CTCTTC	2 cut(s)	168, 243
BstACI	GRCGYC	1 cut(s)	104
BstAUI	TGTACA	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	2 cut(s)	265, 328
BstDSI	CCRYGG	3 cut(s)	107, 333, 352
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	3 cut(s)	49, 91, 316
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	3 cut(s)	46, 88, 313
BstMWI	GCNNNNNNNGC	2 cut(s)	364, 440
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	138, 336
BsuRI	GGCC	2 cut(s)	154, 351
BtgI	CCRYGG	3 cut(s)	107, 333, 352
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	375
BveI	ACCTGC	2 cut(s)	73, 439
Cac8I	GCNNGC	1 cut(s)	375
CciI	TCATGA	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	140
CseI	GACGC	2 cut(s)	112, 274
CsiI	ACCWGGT	1 cut(s)	193
Csp6I	GTAC	3 cut(s)	32, 135, 243
CspAI	ACCGGT	1 cut(s)	140
CviAII	CATG	3 cut(s)	181, 334, 353
CviQI	GTAC	3 cut(s)	32, 135, 243
DdeI	CTNAG	2 cut(s)	265, 328
DpnI	GATC	3 cut(s)	48, 90, 315
DpnII	GATC	3 cut(s)	46, 88, 313
DrdI	GACNNNNNNGTC	1 cut(s)	109
DseDI	GACNNNNNNGTC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	349
Eam1104I	CTCTTC	2 cut(s)	168, 243
EarI	CTCTTC	2 cut(s)	168, 243
Eco130I	CCWWGG	2 cut(s)	333, 352
Eco31I	GGTCTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	333, 352
ErhI	CCWWGG	2 cut(s)	333, 352
FaeI	CATG	3 cut(s)	184, 337, 356
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	3 cut(s)	180, 333, 352
FauNDI	CATATG	2 cut(s)	16, 360
Fnu4HI	GCNGC	2 cut(s)	127, 325
FokI	GGATG	1 cut(s)	303
Fsp4HI	GCNGC	2 cut(s)	127, 325
FspBI	CTAG	4 cut(s)	123, 294, 321, 440
GluI	GCNGC	2 cut(s)	127, 325
HaeIII	GGCC	2 cut(s)	154, 351
HapII	CCGG	1 cut(s)	141
HgaI	GACGC	2 cut(s)	112, 274
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	3 cut(s)	184, 337, 356
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	3 cut(s)	100, 181, 402
Hpy99I	CGWCG	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	82, 309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	364, 440
HpyF3I	CTNAG	2 cut(s)	265, 328
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	3 cut(s)	184, 337, 356
KpnI	GGTACC	1 cut(s)	138
Kzo9I	GATC	3 cut(s)	46, 88, 313
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	8 cut(s)	68, 99, 154, 180, 207, 253, 381, 444
Lsp1109I	GCAGC	2 cut(s)	138, 336
MabI	ACCWGGT	1 cut(s)	193
MaeI	CTAG	4 cut(s)	123, 294, 321, 440
MalI	GATC	3 cut(s)	48, 90, 315
MboI	GATC	3 cut(s)	46, 88, 313
MboII	GAAGA	8 cut(s)	17, 20, 185, 260, 283, 286, 397, 431
MhlI	GDGCHC	1 cut(s)	375
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	1 cut(s)	223
MluNI	TGGCCA	1 cut(s)	351
MnlI	CCTC	7 cut(s)	34, 37, 177, 244, 274, 310, 409
Mox20I	TGGCCA	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	1 cut(s)	68
Msp20I	TGGCCA	1 cut(s)	351
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	364, 440
NcoI	CCATGG	2 cut(s)	333, 352
NdeI	CATATG	2 cut(s)	16, 360
NdeII	GATC	3 cut(s)	46, 88, 313
NlaIII	CATG	3 cut(s)	184, 337, 356
NlaIV	GGNNCC	3 cut(s)	119, 136, 262
PagI	TCATGA	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	11
PinAI	ACCGGT	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	128, 326
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	3 cut(s)	119, 136, 262
RsaI	GTAC	3 cut(s)	33, 136, 244
RsaNI	GTAC	3 cut(s)	32, 135, 243
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	2 cut(s)	127, 325
Sau3AI	GATC	3 cut(s)	46, 88, 313
ScaI	AGTACT	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	7 cut(s)	87, 131, 188, 196, 329, 433, 445
SexAI	ACCWGGT	1 cut(s)	193
SgrAI	CRCCGGYG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
Sse9I	AATT	1 cut(s)	223
SspMI	CTAG	4 cut(s)	123, 294, 321, 440
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	2 cut(s)	333, 352
TaqI	TCGA	1 cut(s)	36
TaqII	GACCGA	1 cut(s)	181
TasI	AATT	1 cut(s)	223
TatI	WGTACW	2 cut(s)	31, 242
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	1 cut(s)	375
TseI	GCWGC	2 cut(s)	126, 324
TspDTI	ATGAA	2 cut(s)	169, 377
TspRI	CASTG	1 cut(s)	375
XspI	CTAG	4 cut(s)	123, 294, 321, 440
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.