Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Reverse (-)

26245319 .. 26246326

Gene Structure 1008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG126600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTTTTCGGTCGGTGCTTGCAAAGCTGGGGGTTAATTGTGCCCAATGGGGAGAGAGAAGGAGATTGGTTGCAGCCTTTGACACCAGAACCCCACTAAAGTATCATAATATTTGGGATGATGATGAATACCAAGATCGGATGCAGCGGAGCATTCGAGCACGACGCCACCGAGGTCCGCAATTTGGTCCATTCCCATTTCAGGCTGGTTATCCACTTCGTCAACCTACGGATAATCCTAAGATTATGGCTTATGCCCGTTTGGCAGTGGAACACTTCAACAAACAAAAGAATTCCCAACTGCAATTTGTGAGAGCAGTAAAGGCAAGTTGCCAGGAGTCCTACAATTGGAATTGGGGGCACTTCTATTATCTAACGCTGGAGGCAGTCGATGCTGAAGTTGTCAAAATGTACCAAGCAATAGTTAATGACGATCTTGATGACCCAAAGCTCTGCCTGTTTGGTCTTGTTGCTGATAATGGCAATGGGAGTCTGTTAAAATTATTTCATAACGATCATGATCGTTATTGTTTCTGGGCACTTGACACCCGGAATCATCTACCAACGGAAATTGAATATTCTCTCAAAGAGCAGATAAAGGCTCCAATGCAGACCAAGATATTTTCTCAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

211

Amino Acids

24.72

Weight (kDa)

8.83

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	78 - 144	1.7e-06	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	148, 179
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	417
AcyI	GRCGYC	1 cut(s)	166
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	3 cut(s)	185, 202, 348
AgsI	TTSAA	2 cut(s)	280, 575
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	2 cut(s)	28, 451
AluI	AGCT	2 cut(s)	28, 451
Alw21I	GWGCWC	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	74, 145
ApoI	RAATTY	1 cut(s)	292
AspS9I	GGNCC	2 cut(s)	176, 188
AsuC2I	CCSGG	1 cut(s)	550
AvaII	GGWCC	2 cut(s)	176, 188
BaeGI	GKGCMC	3 cut(s)	46, 363, 541
BaeI	ACNNNNGTAYC	2 cut(s)	86, 119
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	86, 157
BciT130I	CCWGG	1 cut(s)	335
BcnI	CCSGG	1 cut(s)	550
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	2 cut(s)	75, 146
BlsI	GCNGC	2 cut(s)	76, 147
Bme1390I	CCNGG	2 cut(s)	335, 550
Bme18I	GGWCC	2 cut(s)	176, 188
BmgT120I	GGNCC	2 cut(s)	176, 188
BmiI	GGNNCC	1 cut(s)	603
BmrFI	CCNGG	2 cut(s)	335, 550
BmsI	GCATC	2 cut(s)	132, 382
BpmI	CTGGAG	1 cut(s)	401
BpuMI	CCSGG	1 cut(s)	550
BsaBI	GATNNNNATC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 202, 348
Bse3DI	GCAATG	1 cut(s)	490
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	2 cut(s)	124, 147
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	3 cut(s)	185, 202, 348
BseMI	GCAATG	1 cut(s)	490
BseSI	GKGCMC	3 cut(s)	46, 363, 541
BseXI	GCAGC	2 cut(s)	86, 157
BseYI	CCCAGC	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	14
BsiEI	CGRYCG	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	550
BslI	CCNNNNNNNGG	3 cut(s)	185, 202, 348
BsmI	GAATGC	1 cut(s)	153
Bsp1286I	GDGCHC	4 cut(s)	46, 163, 363, 541
Bsp143I	GATC	4 cut(s)	136, 433, 514, 520
BspACI	CCGC	2 cut(s)	148, 179
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	603
BsrDI	GCAATG	1 cut(s)	490
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	4 cut(s)	136, 433, 514, 520
BssNI	GRCGYC	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	335
BstACI	GRCGYC	1 cut(s)	166
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	240, 627
BstF5I	GGATG	2 cut(s)	124, 147
BstKTI	GATC	4 cut(s)	139, 436, 517, 523
BstMBI	GATC	4 cut(s)	136, 433, 514, 520
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 263, 323, 392
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	2 cut(s)	333, 548
BstSLI	GKGCMC	3 cut(s)	46, 363, 541
BstV1I	GCAGC	2 cut(s)	86, 157
BtsCI	GGATG	2 cut(s)	124, 147
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	21
CciI	TCATGA	1 cut(s)	517
Cfr13I	GGNCC	2 cut(s)	176, 188
CseI	GACGC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	1 cut(s)	518
CviJI	RGCY	7 cut(s)	5, 28, 77, 206, 251, 451, 602
CviKI_1	RGCY	7 cut(s)	5, 28, 77, 206, 251, 451, 602
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	2 cut(s)	240, 627
DpnI	GATC	4 cut(s)	138, 435, 516, 522
DpnII	GATC	4 cut(s)	136, 433, 514, 520
Eco47I	GGWCC	2 cut(s)	176, 188
Eco57I	CTGAAG	1 cut(s)	417
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	333
FaeI	CATG	1 cut(s)	521
FaiI	YATR	5 cut(s)	108, 248, 255, 510, 519
FatI	CATG	1 cut(s)	517
Fnu4HI	GCNGC	2 cut(s)	75, 146
FokI	GGATG	2 cut(s)	131, 154
Fsp4HI	GCNGC	2 cut(s)	75, 146
GluI	GCNGC	2 cut(s)	75, 146
GsaI	CCCAGC	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	401
HapII	CCGG	1 cut(s)	550
HgaI	GACGC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	521
HincII	GTYRAC	1 cut(s)	224
HindII	GTYRAC	1 cut(s)	224
HinfI	GANTC	3 cut(s)	338, 490, 553
HpaII	CCGG	1 cut(s)	550
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	2 cut(s)	437, 518
Hpy8I	GTNNAC	1 cut(s)	224
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	1 cut(s)	54
HpyCH4V	TGCA	5 cut(s)	23, 74, 145, 304, 610
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 263, 323, 392
HpyF3I	CTNAG	2 cut(s)	240, 627
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	521
Kzo9I	GATC	4 cut(s)	136, 433, 514, 520
LmnI	GCTCC	2 cut(s)	150, 607
Lsp1109I	GCAGC	2 cut(s)	86, 157
LweI	GCATC	2 cut(s)	132, 382
MalI	GATC	4 cut(s)	138, 435, 516, 522
MboI	GATC	4 cut(s)	136, 433, 514, 520
MfeI	CAATTG	1 cut(s)	346
MhlI	GDGCHC	4 cut(s)	46, 163, 363, 541
MluCI	AATT	8 cut(s)	37, 182, 292, 305, 346, 352, 500, 570
MlyI	GAGTC	2 cut(s)	347, 499
MnlI	CCTC	2 cut(s)	167, 376
MseI	TTAA	3 cut(s)	36, 426, 497
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	1 cut(s)	550
MspR9I	CCNGG	2 cut(s)	335, 550
MunI	CAATTG	1 cut(s)	346
Mva1269I	GAATGC	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	4 cut(s)	25, 263, 323, 392
NciI	CCSGG	1 cut(s)	550
NdeII	GATC	4 cut(s)	136, 433, 514, 520
NlaIII	CATG	1 cut(s)	521
NlaIV	GGNNCC	1 cut(s)	603
PagI	TCATGA	1 cut(s)	517
PcsI	WCGNNNNNNNCGW	1 cut(s)	169
PctI	GAATGC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	553
PkrI	GCNGC	2 cut(s)	76, 147
PleI	GAGTC	2 cut(s)	346, 498
PpsI	GAGTC	2 cut(s)	346, 498
Psp6I	CCWGG	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	603
PspPI	GGNCC	2 cut(s)	176, 188
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SaqAI	TTAA	3 cut(s)	36, 426, 497
SatI	GCNGC	2 cut(s)	75, 146
Sau3AI	GATC	4 cut(s)	136, 433, 514, 520
Sau96I	GGNCC	2 cut(s)	176, 188
SchI	GAGTC	2 cut(s)	347, 499
ScrFI	CCNGG	2 cut(s)	335, 550
SduI	GDGCHC	4 cut(s)	46, 163, 363, 541
SetI	ASST	4 cut(s)	30, 178, 229, 453
SfaNI	GCATC	2 cut(s)	132, 382
SinI	GGWCC	2 cut(s)	176, 188
Sse9I	AATT	8 cut(s)	37, 182, 292, 305, 346, 352, 500, 570
SsiI	CCGC	2 cut(s)	148, 179
SspI	AATATT	2 cut(s)	112, 578
StyD4I	CCNGG	2 cut(s)	333, 548
TaqI	TCGA	2 cut(s)	157, 390
TasI	AATT	8 cut(s)	37, 182, 292, 305, 346, 352, 500, 570
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	3 cut(s)	36, 426, 497
Tru9I	TTAA	3 cut(s)	36, 426, 497
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	2 cut(s)	74, 145
TspDTI	ATGAA	2 cut(s)	141, 497
TspGWI	ACGGA	2 cut(s)	245, 581
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	2 cut(s)	176, 188
XapI	RAATTY	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.