Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Reverse (-)

21760113 .. 21761274

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G009800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGAAGAGCGGATATTTATAGGTTGGTCTATCGTAGAAGCCCAGAAGAGAAACAAAGCCCGGCCCAAATCAAACATCAAAGAGGGTTTAGGGGCAGCAGCACAGGTGAGTCGAATTACTAGTTGTTTTCTGTTGAATTTGATTGTGGAGATCGAGATCAAGGCAATGGCTTTTCGGTCGGTGCTTGCAAAGCTGGGGGTTAATTGTGCCCAATGGGGAGAGAGAAGGAGATTGGTTGCAGCCTTTGACACCAGAACCCCACTAAAGTATCATAATATTTGGGATGATGATGAATACCAAGATCGGATGCAGCGGCGCATTCAAGCACGACGCCACCGAGGTCAGCGCTTTGGTCCATTCCCATTTCAGGCTGGTTATCCACTTCGTCAACCAACGGATAATCCTAAGATTATGGCTTATGCCCGTTTGGCAGTGGAACACTTCAACAAACAAAAGAATTCCCAACTGCAATTTGTGAGAGCAGTAAAGGCAAGTTGCCAGGAGTCCTACAATTGGGGGCACTTCTATTATCTAACGCTGGAGGCAGTCGATGCTGAAGTTGTCAAAATGTACCAAGCAATAGTTAATGACGATCTTGATGACCCAAAGCTCTGCCTGTTTGGTCTTGTTGCTGATAATGGCAATGGGAGTCTGTTAAAATTATTTCATAACGATCATGATCGTTATTGTTTCTGGGCACTTGACACCCGGAATCATCTACCAACGGAAATTGAATATTCTCTCAAAGAGCAGATAAAGGCTCCAATGCAGACCAAGATATTTTCTCAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

264

Amino Acids

30.67

Weight (kDa)

9.22

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	133 - 197	5.5e-07	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	10
AciI	CCGC	2 cut(s)	10, 313
AcsI	RAATTY	2 cut(s)	136, 457
AcuI	CTGAAG	1 cut(s)	576
AcyI	GRCGYC	1 cut(s)	331
AfaI	GTAC	1 cut(s)	572
AfeI	AGCGCT	1 cut(s)	347
AfiI	CCNNNNNNNGG	2 cut(s)	367, 513
AgsI	TTSAA	4 cut(s)	136, 323, 445, 734
AhlI	ACTAGT	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	2 cut(s)	193, 610
AluI	AGCT	2 cut(s)	193, 610
Aor51HI	AGCGCT	1 cut(s)	347
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	4 cut(s)	95, 98, 239, 310
ApoI	RAATTY	2 cut(s)	136, 457
AspLEI	GCGC	2 cut(s)	318, 348
AspS9I	GGNCC	2 cut(s)	63, 353
AsuC2I	CCSGG	2 cut(s)	61, 709
AsuHPI	GGTGA	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	353
BaeGI	GKGCMC	3 cut(s)	211, 522, 700
BaeI	ACNNNNGTAYC	2 cut(s)	251, 284
BbvI	GCAGC	4 cut(s)	107, 110, 251, 322
BciT130I	CCWGG	1 cut(s)	500
BcnI	CCSGG	2 cut(s)	61, 709
BcuI	ACTAGT	1 cut(s)	119
BfaI	CTAG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	349
BglI	GCCNNNNNGGC	1 cut(s)	428
BisI	GCNGC	5 cut(s)	96, 99, 240, 311, 314
BlsI	GCNGC	5 cut(s)	97, 100, 241, 312, 315
Bme1390I	CCNGG	3 cut(s)	61, 500, 709
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	2 cut(s)	63, 353
BmiI	GGNNCC	1 cut(s)	762
BmrFI	CCNGG	3 cut(s)	61, 500, 709
BmsI	GCATC	2 cut(s)	297, 541
BpmI	CTGGAG	1 cut(s)	560
BpuMI	CCSGG	2 cut(s)	61, 709
BsaBI	GATNNNNATC	2 cut(s)	155, 678
BsaHI	GRCGYC	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 513
Bse3DI	GCAATG	2 cut(s)	171, 649
Bse8I	GATNNNNATC	2 cut(s)	155, 678
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	2 cut(s)	289, 312
BseJI	GATNNNNATC	2 cut(s)	155, 678
BseLI	CCNNNNNNNGG	2 cut(s)	367, 513
BseMI	GCAATG	2 cut(s)	171, 649
BseSI	GKGCMC	3 cut(s)	211, 522, 700
BseXI	GCAGC	4 cut(s)	107, 110, 251, 322
BseYI	CCCAGC	1 cut(s)	193
Bsh1285I	CGRYCG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	64
BsiEI	CGRYCG	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	61, 709
BslI	CCNNNNNNNGG	2 cut(s)	367, 513
BsmI	GAATGC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	64
Bsp1286I	GDGCHC	3 cut(s)	211, 522, 700
Bsp143I	GATC	6 cut(s)	150, 156, 301, 592, 673, 679
BspACI	CCGC	2 cut(s)	10, 313
BspANI	GGCC	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	1 cut(s)	762
BsrBI	CCGCTC	1 cut(s)	10
BsrDI	GCAATG	2 cut(s)	171, 649
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	6 cut(s)	150, 156, 301, 592, 673, 679
BssNI	GRCGYC	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	500
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	331
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	2 cut(s)	405, 786
BstF5I	GGATG	2 cut(s)	289, 312
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	2 cut(s)	318, 348
BstKTI	GATC	6 cut(s)	153, 159, 304, 595, 676, 682
BstMBI	GATC	6 cut(s)	150, 156, 301, 592, 673, 679
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 428, 488, 551
BstNI	CCWGG	1 cut(s)	500
BstSCI	CCNGG	3 cut(s)	59, 498, 707
BstSLI	GKGCMC	3 cut(s)	211, 522, 700
BstV1I	GCAGC	4 cut(s)	107, 110, 251, 322
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	289, 312
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	1 cut(s)	438
Cac8I	GCNNGC	1 cut(s)	186
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	2 cut(s)	318, 348
Cfr13I	GGNCC	2 cut(s)	63, 353
CseI	GACGC	1 cut(s)	339
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	1 cut(s)	677
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	2 cut(s)	405, 786
DpnI	GATC	6 cut(s)	152, 158, 303, 594, 675, 681
DpnII	GATC	6 cut(s)	150, 156, 301, 592, 673, 679
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	353
Eco47III	AGCGCT	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	576
EcoRI	GAATTC	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	498
FaeI	CATG	1 cut(s)	680
FaiI	YATR	6 cut(s)	20, 273, 413, 420, 669, 678
FatI	CATG	1 cut(s)	676
Fnu4HI	GCNGC	5 cut(s)	96, 99, 240, 311, 314
FokI	GGATG	2 cut(s)	296, 319
Fsp4HI	GCNGC	5 cut(s)	96, 99, 240, 311, 314
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	2 cut(s)	317, 347
GluI	GCNGC	5 cut(s)	96, 99, 240, 311, 314
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	560
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	2 cut(s)	61, 709
HgaI	GACGC	1 cut(s)	339
HhaI	GCGC	2 cut(s)	318, 348
Hin1I	GRCGYC	1 cut(s)	331
Hin1II	CATG	1 cut(s)	680
Hin6I	GCGC	2 cut(s)	316, 346
HinP1I	GCGC	2 cut(s)	316, 346
HincII	GTYRAC	1 cut(s)	389
HindII	GTYRAC	1 cut(s)	389
HinfI	GANTC	4 cut(s)	109, 503, 649, 712
HpaII	CCGG	2 cut(s)	61, 709
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	3 cut(s)	154, 596, 677
Hpy8I	GTNNAC	1 cut(s)	389
Hpy99I	CGWCG	1 cut(s)	333
HpyAV	CCTTC	1 cut(s)	219
HpyCH4V	TGCA	5 cut(s)	188, 239, 310, 469, 769
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 428, 488, 551
HpyF3I	CTNAG	2 cut(s)	405, 786
Hsp92I	GRCGYC	1 cut(s)	331
Hsp92II	CATG	1 cut(s)	680
HspAI	GCGC	2 cut(s)	316, 346
Kzo9I	GATC	6 cut(s)	150, 156, 301, 592, 673, 679
LmnI	GCTCC	1 cut(s)	766
Lsp1109I	GCAGC	4 cut(s)	107, 110, 251, 322
LweI	GCATC	2 cut(s)	297, 541
MaeI	CTAG	1 cut(s)	120
MalI	GATC	6 cut(s)	152, 158, 303, 594, 675, 681
MbiI	CCGCTC	1 cut(s)	10
MboI	GATC	6 cut(s)	150, 156, 301, 592, 673, 679
MboII	GAAGA	2 cut(s)	17, 58
MfeI	CAATTG	1 cut(s)	511
MhlI	GDGCHC	3 cut(s)	211, 522, 700
MluCI	AATT	8 cut(s)	114, 136, 202, 457, 470, 511, 659, 729
MlyI	GAGTC	3 cut(s)	118, 512, 658
MnlI	CCTC	3 cut(s)	76, 332, 535
MseI	TTAA	3 cut(s)	201, 585, 656
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	2 cut(s)	61, 709
MspR9I	CCNGG	3 cut(s)	61, 500, 709
MunI	CAATTG	1 cut(s)	511
Mva1269I	GAATGC	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	4 cut(s)	190, 428, 488, 551
NciI	CCSGG	2 cut(s)	61, 709
NdeII	GATC	6 cut(s)	150, 156, 301, 592, 673, 679
NlaIII	CATG	1 cut(s)	680
NlaIV	GGNNCC	1 cut(s)	762
PagI	TCATGA	1 cut(s)	676
PcsI	WCGNNNNNNNCGW	1 cut(s)	334
PctI	GAATGC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	712
PkrI	GCNGC	5 cut(s)	97, 100, 241, 312, 315
PleI	GAGTC	3 cut(s)	117, 511, 657
PpsI	GAGTC	3 cut(s)	117, 511, 657
Psp6I	CCWGG	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	762
PspPI	GGNCC	2 cut(s)	63, 353
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SaqAI	TTAA	3 cut(s)	201, 585, 656
SatI	GCNGC	5 cut(s)	96, 99, 240, 311, 314
Sau3AI	GATC	6 cut(s)	150, 156, 301, 592, 673, 679
Sau96I	GGNCC	2 cut(s)	63, 353
SchI	GAGTC	3 cut(s)	118, 512, 658
ScrFI	CCNGG	3 cut(s)	61, 500, 709
SduI	GDGCHC	3 cut(s)	211, 522, 700
SetI	ASST	5 cut(s)	25, 108, 195, 343, 612
SfaNI	GCATC	2 cut(s)	297, 541
SinI	GGWCC	1 cut(s)	353
SpeI	ACTAGT	1 cut(s)	119
Sse9I	AATT	8 cut(s)	114, 136, 202, 457, 470, 511, 659, 729
SsiI	CCGC	2 cut(s)	10, 313
SspI	AATATT	2 cut(s)	277, 737
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	3 cut(s)	59, 498, 707
TaqI	TCGA	3 cut(s)	112, 153, 549
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	8 cut(s)	114, 136, 202, 457, 470, 511, 659, 729
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	712
Tru1I	TTAA	3 cut(s)	201, 585, 656
Tru9I	TTAA	3 cut(s)	201, 585, 656
TscAI	CASTG	1 cut(s)	438
TseI	GCWGC	4 cut(s)	95, 98, 239, 310
TspDTI	ATGAA	2 cut(s)	306, 656
TspGWI	ACGGA	2 cut(s)	410, 740
TspRI	CASTG	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	2 cut(s)	136, 457
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.