Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Forward (+)

45667184 .. 45670704

Gene Structure 3521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00364420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGATGGGTTTTGGGCCTGTGCCTGGAAAGCTGAGGAATAGCTTAATTGCGGTTAACAGAATTAGATCAATGGCAGACAAGGTTAGTGGAATTGGAGCCTCAAAGAATCATTCGATGCCCCTTGATTTTGGAATTAGGCACCAAGAACACAAACCCTTGTTCCAGCCTTTCATTCGAAGCCTCCTGCAGAAAGAATCATTAACAGACGAAGAATTAACTCGCATTCAAACCTTCCTGGGGGAATTAAACTATCAAGGCTCGTGGACTCCCGAGGAACAATTAACCTACCAAGAATTGTCGAATCGGCTGGTGCTGCTTAATGTAACGTTTAACGAACGCGAATCAATCCTTTGCAGACTGAGGGATGATGATCCCAAGATTACAGCTACTGCTGGTTTTGCGGTGGCAGAATTCAACAAGCAGAAGAATGCCCAGCTGCGATTCATTAGAGCAGTAAAGGGATTTCGCAGTTATAGTCCTCTTTGGTTTGATTACTTTCTAACTTTGGAGGCAGTTGATGATCATCTGGGCAGAACTTACCAAGCAGTAGTTAAAGAAAATATCCTGTATCCCCATAAACCCTTTAAGGTCCTATTATTTCGTCTTGTTGCTGATAACGGCAATGGGAATTTGTTAAATCTAATTGATAACAGACGGAGTGGGCCTTATGGTGAATGTCTATATGATGATCGAGGTTTTACGTTCAGCGTTGGGGATTACAAGTTAAAGCCTCCGATGAAAATAAAAAGATGTTCTCTTGAGGGTGAGATACTAAGCTCCTTGCACATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

264

Amino Acids

30.28

Weight (kDa)

9.03

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	123 - 190	2e-08	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	138
AccII	CGCG	1 cut(s)	339
AciI	CCGC	2 cut(s)	50, 401
AclI	AACGTT	1 cut(s)	326
AclWI	GGATC	1 cut(s)	365
AcsI	RAATTY	2 cut(s)	410, 628
AfiI	CCNNNNNNNGG	2 cut(s)	23, 237
AflIII	ACRYGT	1 cut(s)	786
AgsI	TTSAA	2 cut(s)	227, 415
AjnI	CCWGG	2 cut(s)	22, 234
AluBI	AGCT	5 cut(s)	31, 42, 386, 436, 777
AluI	AGCT	5 cut(s)	31, 42, 386, 436, 777
AlwI	GGATC	1 cut(s)	365
AlwNI	CAGNNNCTG	1 cut(s)	389
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	2 cut(s)	14, 662
ApeKI	GCWGC	2 cut(s)	313, 436
ApoI	RAATTY	2 cut(s)	410, 628
AspS9I	GGNCC	3 cut(s)	14, 589, 662
AsuHPI	GGTGA	2 cut(s)	683, 776
AsuII	TTCGAA	1 cut(s)	175
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	138
BauI	CACGAG	1 cut(s)	259
BbvCI	CCTCAGC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	300, 423
BceAI	ACGGC	1 cut(s)	634
BciT130I	CCWGG	2 cut(s)	24, 236
BciVI	GTATCC	1 cut(s)	579
BclI	TGATCA	1 cut(s)	520
BfmI	CTRYAG	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	579
BisI	GCNGC	2 cut(s)	314, 437
BlsI	GCNGC	2 cut(s)	315, 438
Bme1390I	CCNGG	2 cut(s)	24, 236
Bme18I	GGWCC	1 cut(s)	589
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	3 cut(s)	14, 589, 662
BmiI	GGNNCC	2 cut(s)	97, 140
BmrFI	CCNGG	2 cut(s)	24, 236
BmsI	GCATC	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	32
Bpu14I	TTCGAA	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	779
BsaBI	GATNNNNATC	2 cut(s)	369, 522
BsaJI	CCNNGG	2 cut(s)	235, 270
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 237
Bse3DI	GCAATG	1 cut(s)	628
Bse8I	GATNNNNATC	2 cut(s)	369, 522
BseBI	CCWGG	2 cut(s)	24, 236
BseDI	CCNNGG	2 cut(s)	235, 270
BseGI	GGATG	1 cut(s)	370
BseJI	GATNNNNATC	2 cut(s)	369, 522
BseLI	CCNNNNNNNGG	2 cut(s)	23, 237
BseMI	GCAATG	1 cut(s)	628
BseMII	CTCAG	2 cut(s)	23, 350
BseXI	GCAGC	2 cut(s)	300, 423
BseYI	CCCAGC	1 cut(s)	432
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	16, 664
BshNI	GGYRCC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	269
BslI	CCNNNNNNNGG	2 cut(s)	23, 237
BsmI	GAATGC	2 cut(s)	222, 433
BsnI	GGCC	2 cut(s)	16, 664
BsoBI	CYCGRG	1 cut(s)	269
Bsp119I	TTCGAA	1 cut(s)	175
Bsp143I	GATC	4 cut(s)	65, 370, 520, 688
BspACI	CCGC	2 cut(s)	50, 401
BspANI	GGCC	2 cut(s)	16, 664
BspCNI	CTCAG	2 cut(s)	24, 351
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	97, 140
BspMAI	CTGCAG	1 cut(s)	189
BspPI	GGATC	1 cut(s)	365
BspT104I	TTCGAA	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	628
BssECI	CCNNGG	2 cut(s)	235, 270
BssMI	GATC	4 cut(s)	65, 370, 520, 688
BssSI	CACGAG	1 cut(s)	259
Bst2BI	CACGAG	1 cut(s)	259
Bst2UI	CCWGG	2 cut(s)	24, 236
BstBI	TTCGAA	1 cut(s)	175
BstDEI	CTNAG	3 cut(s)	32, 359, 773
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	1 cut(s)	339
BstKTI	GATC	4 cut(s)	68, 373, 523, 691
BstMBI	GATC	4 cut(s)	65, 370, 520, 688
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 313, 398
BstNI	CCWGG	2 cut(s)	24, 236
BstNSI	RCATGY	1 cut(s)	790
BstSCI	CCNGG	2 cut(s)	22, 234
BstSFI	CTRYAG	1 cut(s)	185
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	300, 423
BsuI	GTATCC	1 cut(s)	579
BsuRI	GGCC	2 cut(s)	16, 664
BtsCI	GGATG	1 cut(s)	370
CaiI	CAGNNNCTG	1 cut(s)	389
Cfr13I	GGNCC	3 cut(s)	14, 589, 662
CspCI	CAANNNNNGTGG	4 cut(s)	67, 102, 242, 277
CviAII	CATG	1 cut(s)	787
DdeI	CTNAG	3 cut(s)	32, 359, 773
DpnI	GATC	4 cut(s)	67, 372, 522, 690
DpnII	GATC	4 cut(s)	65, 370, 520, 688
Eco47I	GGWCC	1 cut(s)	589
Eco88I	CYCGRG	1 cut(s)	269
EcoO109I	RGGNCCY	1 cut(s)	589
EcoRI	GAATTC	1 cut(s)	410
EcoRII	CCWGG	2 cut(s)	22, 234
FaeI	CATG	1 cut(s)	790
FaiI	YATR	6 cut(s)	474, 576, 669, 682, 684, 788
FatI	CATG	1 cut(s)	786
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	2 cut(s)	314, 437
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	2 cut(s)	314, 437
GluI	GCNGC	2 cut(s)	314, 437
GsaI	CCCAGC	1 cut(s)	436
HaeIII	GGCC	2 cut(s)	16, 664
Hin1II	CATG	1 cut(s)	790
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	6 cut(s)	106, 194, 265, 301, 341, 441
HpaI	GTTAAC	1 cut(s)	55
HphI	GGTGA	2 cut(s)	683, 776
Hpy166II	GTNNAC	2 cut(s)	55, 264
Hpy188I	TCNGA	1 cut(s)	735
Hpy188III	TCNNGA	2 cut(s)	269, 758
Hpy8I	GTNNAC	2 cut(s)	55, 264
HpyAV	CCTTC	1 cut(s)	241
HpyCH4IV	ACGT	2 cut(s)	326, 701
HpyCH4V	TGCA	3 cut(s)	187, 354, 784
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 313, 398
HpyF3I	CTNAG	3 cut(s)	32, 359, 773
HpySE526I	ACGT	2 cut(s)	326, 701
Hsp92II	CATG	1 cut(s)	790
Ksp22I	TGATCA	1 cut(s)	520
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	65, 370, 520, 688
LmnI	GCTCC	2 cut(s)	95, 782
Lsp1109I	GCAGC	2 cut(s)	300, 423
LweI	GCATC	1 cut(s)	105
MaeII	ACGT	2 cut(s)	326, 701
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	4 cut(s)	67, 372, 522, 690
MboI	GATC	4 cut(s)	65, 370, 520, 688
MboII	GAAGA	2 cut(s)	221, 436
MlyI	GAGTC	1 cut(s)	259
MspA1I	CMGCKG	1 cut(s)	436
MspR9I	CCNGG	2 cut(s)	24, 236
Mva1269I	GAATGC	2 cut(s)	222, 433
MvaI	CCWGG	2 cut(s)	24, 236
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	3 cut(s)	28, 313, 398
NdeII	GATC	4 cut(s)	65, 370, 520, 688
NlaIII	CATG	1 cut(s)	790
NlaIV	GGNNCC	2 cut(s)	97, 140
NspI	RCATGY	1 cut(s)	790
NspV	TTCGAA	1 cut(s)	175
PciI	ACATGT	1 cut(s)	786
PctI	GAATGC	2 cut(s)	222, 433
PfeI	GAWTC	5 cut(s)	106, 194, 301, 341, 441
PkrI	GCNGC	2 cut(s)	315, 438
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	589
PscI	ACATGT	1 cut(s)	786
Psp1406I	AACGTT	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	589
Psp6I	CCWGG	2 cut(s)	22, 234
PspFI	CCCAGC	1 cut(s)	432
PspGI	CCWGG	2 cut(s)	22, 234
PspN4I	GGNNCC	2 cut(s)	97, 140
PspPI	GGNCC	3 cut(s)	14, 589, 662
PspPPI	RGGWCCY	1 cut(s)	589
PstI	CTGCAG	1 cut(s)	189
PstNI	CAGNNNCTG	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	436
SatI	GCNGC	2 cut(s)	314, 437
Sau3AI	GATC	4 cut(s)	65, 370, 520, 688
Sau96I	GGNCC	3 cut(s)	14, 589, 662
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	2 cut(s)	24, 236
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	185
SfuI	TTCGAA	1 cut(s)	175
SinI	GGWCC	1 cut(s)	589
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
SsiI	CCGC	2 cut(s)	50, 401
StyD4I	CCNGG	2 cut(s)	22, 234
TaiI	ACGT	2 cut(s)	329, 704
TaqI	TCGA	4 cut(s)	113, 175, 299, 691
TfiI	GAWTC	5 cut(s)	106, 194, 301, 341, 441
TseI	GCWGC	2 cut(s)	313, 436
TspDTI	ATGAA	3 cut(s)	160, 433, 752
TspGWI	ACGGA	1 cut(s)	670
VpaK11BI	GGWCC	1 cut(s)	589
XapI	RAATTY	2 cut(s)	410, 628
XceI	RCATGY	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.