RLG00000007620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002040
Physical Location & Seq
Reverse (-)
19068847 .. 19070979
2133 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007620

Sequence Viewer

Length: 723 bp
ATGGGTCTTGGGCCTGTGCTTGGAAAGCTGAGGAATAACTTACTTGCGGTTAACAGAATTAGATCAATGGCAGACAAGGTTAGTGGAATTGGAGCCTCATCAAACAATCATTCGATGCCCCTTGATTTTGGAATCAGGCACCAAGAACACAAACCCTTGTTCCCGCCTTTCATTCGAAGCCTCCTGCAGAAAGGATCATTAACAGACGCAGAATTAACTCGCATGCAAACCTTCCTGGGGGAATTAAACTATCAAGGCTCGTGGACTCCCGACGAAAAATTAACCTACCAAGAATTGTCGAATCGGCTGGTGCTGCTTAATGTAACGTTTAACGAACGCGAATCAATCCTTTGGAGACTGAGGGATGATGATCCCAAGATTACAGCTACTGCTGGTTTTGCGGTGGCAGAATTCAACAAGCACAAGAATGCCCAGCTGCGATTCATTAGAGCAGTAAAGGGATTTCGCAGTTATAGTCGTCTTTGGTTTGATTACTTTCTAACTTTGGAGGCAGTTGATGATCATCTGGGCAGAACTTACCAAGCAGTTGTTAAAGAAAATCTCAAGTATCCCCATAAACCCTTTAAGGTCCTATTATTTGGTCTTGTTGCTGATAACGGCAATGGGAATTTGTTAAATCTAATTGATAACAGATGGAGAGGGCCTTATGGTGAATGTCTATATGATGATCGAGGTAAGCAATCTATACCATGTTGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

27.49

Weight (kDa)

9.34

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQAPI PF16845 123 - 190 4e-08 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 138
AccII CGCG 1 cut(s) 339
AciI CCGC 3 cut(s) 47, 164, 401
AclI AACGTT 1 cut(s) 326
AclWI GGATC 2 cut(s) 202, 365
AcsI RAATTY 2 cut(s) 410, 628
AfiI CCNNNNNNNGG 2 cut(s) 20, 237
AgsI TTSAA 1 cut(s) 415
AjnI CCWGG 1 cut(s) 234
AluBI AGCT 3 cut(s) 28, 386, 436
AluI AGCT 3 cut(s) 28, 386, 436
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 2 cut(s) 202, 365
AlwNI CAGNNNCTG 1 cut(s) 389
AoxI GGCC 2 cut(s) 11, 662
ApeKI GCWGC 2 cut(s) 313, 436
ApoI RAATTY 2 cut(s) 410, 628
AspS9I GGNCC 3 cut(s) 11, 589, 662
AsuHPI GGTGA 1 cut(s) 683
AsuII TTCGAA 1 cut(s) 175
AvaII GGWCC 1 cut(s) 589
BanI GGYRCC 1 cut(s) 138
BauI CACGAG 1 cut(s) 259
BbvCI CCTCAGC 1 cut(s) 29
BbvI GCAGC 2 cut(s) 300, 423
BccI CCATC 1 cut(s) 648
BceAI ACGGC 1 cut(s) 634
BciT130I CCWGG 1 cut(s) 236
BciVI GTATCC 1 cut(s) 579
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 1 cut(s) 349
BfmI CTRYAG 1 cut(s) 185
BfuI GTATCC 1 cut(s) 579
BisI GCNGC 2 cut(s) 314, 437
BlsI GCNGC 2 cut(s) 315, 438
Bme1390I CCNGG 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 589
BmgT120I GGNCC 3 cut(s) 11, 589, 662
BmiI GGNNCC 2 cut(s) 94, 140
BmrFI CCNGG 1 cut(s) 236
BmsI GCATC 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 29
Bpu14I TTCGAA 1 cut(s) 175
BpuEI CTTGAG 1 cut(s) 548
BsaBI GATNNNNATC 2 cut(s) 369, 522
BsaJI CCNNGG 1 cut(s) 235
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 237
Bse3DI GCAATG 1 cut(s) 628
Bse8I GATNNNNATC 2 cut(s) 369, 522
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 1 cut(s) 370
BseJI GATNNNNATC 2 cut(s) 369, 522
BseLI CCNNNNNNNGG 2 cut(s) 20, 237
BseMI GCAATG 1 cut(s) 628
BseMII CTCAG 2 cut(s) 20, 350
BseXI GCAGC 2 cut(s) 300, 423
BseYI CCCAGC 1 cut(s) 432
Bsh1236I CGCG 1 cut(s) 339
BshFI GGCC 2 cut(s) 13, 664
BshNI GGYRCC 1 cut(s) 138
BslI CCNNNNNNNGG 2 cut(s) 20, 237
BsmAI GTCTC 1 cut(s) 349
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 2 cut(s) 13, 664
Bsp119I TTCGAA 1 cut(s) 175
Bsp143I GATC 5 cut(s) 62, 194, 370, 520, 688
BspACI CCGC 3 cut(s) 47, 164, 401
BspANI GGCC 2 cut(s) 13, 664
BspCNI CTCAG 2 cut(s) 21, 351
BspFNI CGCG 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 94, 140
BspMAI CTGCAG 1 cut(s) 189
BspPI GGATC 2 cut(s) 202, 365
BspT104I TTCGAA 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 628
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 5 cut(s) 62, 194, 370, 520, 688
BssSI CACGAG 1 cut(s) 259
Bst2BI CACGAG 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 236
BstBI TTCGAA 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 224
BstDEI CTNAG 2 cut(s) 29, 359
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 339
BstKTI GATC 5 cut(s) 65, 197, 373, 523, 691
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 5 cut(s) 62, 194, 370, 520, 688
BstMWI GCNNNNNNNGC 3 cut(s) 25, 313, 398
BstNI CCWGG 1 cut(s) 236
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 185
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 2 cut(s) 300, 423
BsuI GTATCC 1 cut(s) 579
BsuRI GGCC 2 cut(s) 13, 664
BtsCI GGATG 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 224
CaiI CAGNNNCTG 1 cut(s) 389
Cfr13I GGNCC 3 cut(s) 11, 589, 662
CseI GACGC 1 cut(s) 215
CspCI CAANNNNNGTGG 4 cut(s) 64, 99, 242, 277
CviAII CATG 2 cut(s) 223, 711
CviJI RGCY 9 cut(s) 13, 28, 95, 180, 258, 307, 386, 436, 664
CviKI_1 RGCY 9 cut(s) 13, 28, 95, 180, 258, 307, 386, 436, 664
DdeI CTNAG 2 cut(s) 29, 359
DpnI GATC 5 cut(s) 64, 196, 372, 522, 690
DpnII GATC 5 cut(s) 62, 194, 370, 520, 688
Eco47I GGWCC 1 cut(s) 589
EcoO109I RGGNCCY 2 cut(s) 589, 662
EcoRI GAATTC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 234
FaeI CATG 2 cut(s) 226, 714
FaiI YATR 8 cut(s) 224, 474, 576, 669, 682, 684, 707, 712
FatI CATG 2 cut(s) 222, 710
FauI CCCGC 1 cut(s) 171
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 2 cut(s) 314, 437
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 2 cut(s) 314, 437
GluI GCNGC 2 cut(s) 314, 437
GsaI CCCAGC 1 cut(s) 436
HaeIII GGCC 2 cut(s) 13, 664
HgaI GACGC 1 cut(s) 215
Hin1II CATG 2 cut(s) 226, 714
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HinfI GANTC 5 cut(s) 132, 265, 301, 341, 441
HpaI GTTAAC 1 cut(s) 52
HphI GGTGA 1 cut(s) 683
Hpy166II GTNNAC 2 cut(s) 52, 264
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 2 cut(s) 52, 264
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 2 cut(s) 187, 226
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 313, 398
HpyF3I CTNAG 2 cut(s) 29, 359
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 2 cut(s) 226, 714
Ksp22I TGATCA 1 cut(s) 520
KspAI GTTAAC 1 cut(s) 52
Kzo9I GATC 5 cut(s) 62, 194, 370, 520, 688
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 9 cut(s) 27, 121, 197, 221, 248, 293, 378, 446, 512
Lsp1109I GCAGC 2 cut(s) 300, 423
LweI GCATC 1 cut(s) 105
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 322
MalI GATC 5 cut(s) 64, 196, 372, 522, 690
MboI GATC 5 cut(s) 62, 194, 370, 520, 688
MluCI AATT 9 cut(s) 57, 87, 212, 242, 278, 293, 410, 628, 642
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 7 cut(s) 24, 106, 191, 354, 502, 653, 686
MslI CAYNNNNRTG 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 436
MspR9I CCNGG 1 cut(s) 236
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 1 cut(s) 236
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 3 cut(s) 25, 313, 398
NdeII GATC 5 cut(s) 62, 194, 370, 520, 688
NlaIII CATG 2 cut(s) 226, 714
NlaIV GGNNCC 2 cut(s) 94, 140
NspI RCATGY 1 cut(s) 226
NspV TTCGAA 1 cut(s) 175
PaeI GCATGC 1 cut(s) 226
PctI GAATGC 1 cut(s) 433
PfeI GAWTC 4 cut(s) 132, 301, 341, 441
PkrI GCNGC 2 cut(s) 315, 438
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 589
Psp1406I AACGTT 1 cut(s) 326
Psp5II RGGWCCY 1 cut(s) 589
Psp6I CCWGG 1 cut(s) 234
PspFI CCCAGC 1 cut(s) 432
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 2 cut(s) 94, 140
PspPI GGNCC 3 cut(s) 11, 589, 662
PspPPI RGGWCCY 1 cut(s) 589
PstI CTGCAG 1 cut(s) 189
PstNI CAGNNNCTG 1 cut(s) 389
PvuII CAGCTG 1 cut(s) 436
RseI CAYNNNNRTG 1 cut(s) 426
SatI GCNGC 2 cut(s) 314, 437
Sau3AI GATC 5 cut(s) 62, 194, 370, 520, 688
Sau96I GGNCC 3 cut(s) 11, 589, 662
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 236
SetI ASST 9 cut(s) 30, 81, 233, 287, 329, 388, 438, 591, 697
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 1 cut(s) 185
SfuI TTCGAA 1 cut(s) 175
SinI GGWCC 1 cut(s) 589
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
SphI GCATGC 1 cut(s) 226
Sse9I AATT 9 cut(s) 57, 87, 212, 242, 278, 293, 410, 628, 642
SsiI CCGC 3 cut(s) 47, 164, 401
StyD4I CCNGG 1 cut(s) 234
TaiI ACGT 1 cut(s) 329
TaqI TCGA 4 cut(s) 113, 175, 299, 691
TasI AATT 9 cut(s) 57, 87, 212, 242, 278, 293, 410, 628, 642
TfiI GAWTC 4 cut(s) 132, 301, 341, 441
TseI GCWGC 2 cut(s) 313, 436
TspDTI ATGAA 2 cut(s) 160, 433
VpaK11BI GGWCC 1 cut(s) 589
XapI RAATTY 2 cut(s) 410, 628
XceI RCATGY 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.