Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Reverse (-)

2615797 .. 2617401

Gene Structure 1605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G034500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGACAACAGCTATTCGGTCTGTGGTTGGAAAGTTGGGGAGTAAATACTCTTCATGTTGTCACAGCAAAGGAAGAGCAGTAGCAAACATGGTTAGGGTTGGGGACTTTCAAATTAGGAGCTCAGTAGTCAGCAACTACAATATTGACCGTGATGTCTTGTTTTCAATTTCAAAGCCGCCTCCTTCTTATGGTTATTCCTCTCGCCATCCTTTTCTTTTTGGTAACCACCATAAGAAAGCTCTGCCAGTTCTGCAATATTGTAGGTCGCCCCGTGGATTCGGAGGTGGTCATCGTGTAGCTCCTTATTCTATGGATAATCCCAATACCATAGCTCTTGCCATTTTCGCTGTGAAAGAGTACAACAAGGAAAAGAATGCCAAACTGCAGCTTGTGACAGTTTTGAGGGCATGGTACAGATGTACTGGTGGTTCGATCTCATATTTTTTTACAATGGAGGCAGTTTATAAGGGTGTGGTTAAAGTTTACCAAGCATTGGTTTTTGTACGTAGCCGCCAAAGGGAGCTAAGATTGTTTGGTCTTCTTAATGTTGATAACGGGAGTTTGTTAAAACTAATTGTTAAAGGACCTACAACATCTTATGAAGGACTATCTGCGTGCATAGACCCATGGCAGGTCAAGAAGAAGATTCCAAGAAAGACAAGCAGAAATTGTCTTGAGGAAGAGATACTAAGCACCTTACTGCACATCTCACCTCTCCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

241

Amino Acids

26.95

Weight (kDa)

10.02

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
AasI	GACNNNNNNGTC	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	622
AccB7I	CCANNNNNTGG	1 cut(s)	493
AciI	CCGC	2 cut(s)	176, 511
AfaI	GTAC	4 cut(s)	359, 413, 421, 504
AfiI	CCNNNNNNNGG	4 cut(s)	188, 493, 517, 631
AgsI	TTSAA	3 cut(s)	110, 165, 171
AluBI	AGCT	7 cut(s)	11, 120, 239, 299, 332, 388, 523
AluI	AGCT	7 cut(s)	11, 120, 239, 299, 332, 388, 523
Alw21I	GWGCWC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	584
AsuHPI	GGTGA	1 cut(s)	702
AvaII	GGWCC	1 cut(s)	584
BaeI	ACNNNNGTAYC	2 cut(s)	403, 436
BanII	GRGCYC	1 cut(s)	122
BarI	GAAGNNNNNNTAC	2 cut(s)	34, 66
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	383
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	3 cut(s)	176, 386, 511
BlsI	GCNGC	3 cut(s)	177, 387, 512
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	584
BpiI	GAAGAC	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	695
BsaAI	YACGTR	1 cut(s)	506
BsaJI	CCNNGG	2 cut(s)	271, 626
Bsc4I	CCNNNNNNNGG	4 cut(s)	188, 493, 517, 631
Bse1I	ACTGG	2 cut(s)	245, 427
BseDI	CCNNGG	2 cut(s)	271, 626
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	4 cut(s)	188, 493, 517, 631
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	2 cut(s)	245, 427
BseXI	GCAGC	1 cut(s)	397
BsgI	GTGCAG	1 cut(s)	686
BsiHKAI	GWGCWC	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	4 cut(s)	188, 493, 517, 631
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	432
Bsp19I	CCATGG	1 cut(s)	626
BspACI	CCGC	2 cut(s)	176, 511
BspCNI	CTCAG	1 cut(s)	134
BspMAI	CTGCAG	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	622
BspQI	GCTCTTC	1 cut(s)	67
BsrI	ACTGG	2 cut(s)	245, 427
BssECI	CCNNGG	2 cut(s)	271, 626
BssMI	GATC	1 cut(s)	432
BssT1I	CCWWGG	1 cut(s)	626
Bst4CI	ACNGT	2 cut(s)	149, 397
Bst6I	CTCTTC	3 cut(s)	55, 67, 675
BstBAI	YACGTR	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	3 cut(s)	121, 524, 689
BstDSI	CCRYGG	2 cut(s)	271, 626
BstEII	GGTNACC	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	1 cut(s)	435
BstMBI	GATC	1 cut(s)	432
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 344
BstPI	GGTNACC	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	383
BstSNI	TACGTA	1 cut(s)	506
BstV1I	GCAGC	1 cut(s)	397
BstV2I	GAAGAC	1 cut(s)	530
BtgI	CCRYGG	2 cut(s)	271, 626
BtsCI	GGATG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	616
Cfr13I	GGNCC	1 cut(s)	584
Csp6I	GTAC	4 cut(s)	358, 412, 420, 503
CviAII	CATG	4 cut(s)	54, 88, 408, 627
CviJI	RGCY	9 cut(s)	11, 120, 175, 239, 299, 332, 388, 510, 523
CviKI_1	RGCY	9 cut(s)	11, 120, 175, 239, 299, 332, 388, 510, 523
CviQI	GTAC	4 cut(s)	358, 412, 420, 503
DdeI	CTNAG	3 cut(s)	121, 524, 689
DpnI	GATC	1 cut(s)	434
DpnII	GATC	1 cut(s)	432
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
Eam1104I	CTCTTC	3 cut(s)	55, 67, 675
EarI	CTCTTC	3 cut(s)	55, 67, 675
Ecl136II	GAGCTC	1 cut(s)	120
Eco105I	TACGTA	1 cut(s)	506
Eco130I	CCWWGG	1 cut(s)	626
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	584
Eco53kI	GAGCTC	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	584
EcoO65I	GGTNACC	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	626
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	626
FaeI	CATG	4 cut(s)	57, 91, 411, 630
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	4 cut(s)	53, 87, 407, 626
Fnu4HI	GCNGC	3 cut(s)	176, 386, 511
FokI	GGATG	1 cut(s)	192
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	3 cut(s)	176, 386, 511
GluI	GCNGC	3 cut(s)	176, 386, 511
Hin1II	CATG	4 cut(s)	57, 91, 411, 630
HinfI	GANTC	2 cut(s)	276, 646
HphI	GGTGA	1 cut(s)	702
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	2 cut(s)	281, 719
Hpy188III	TCNNGA	2 cut(s)	637, 674
Hpy8I	GTNNAC	1 cut(s)	484
HpyAV	CCTTC	2 cut(s)	192, 596
HpyCH4III	ACNGT	2 cut(s)	149, 397
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	4 cut(s)	253, 385, 618, 703
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 344
HpyF3I	CTNAG	3 cut(s)	121, 524, 689
HpySE526I	ACGT	1 cut(s)	505
Hsp92II	CATG	4 cut(s)	57, 91, 411, 630
Kzo9I	GATC	1 cut(s)	432
LguI	GCTCTTC	1 cut(s)	67
LmnI	GCTCC	3 cut(s)	117, 304, 520
LpnPI	CCDG	3 cut(s)	258, 408, 617
Lsp1109I	GCAGC	1 cut(s)	397
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	3 cut(s)	59, 221, 391
MalI	GATC	1 cut(s)	434
MboI	GATC	1 cut(s)	432
MboII	GAAGA	6 cut(s)	42, 84, 530, 652, 655, 692
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	4 cut(s)	111, 165, 573, 667
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	7 cut(s)	189, 208, 275, 396, 448, 670, 723
MseI	TTAA	4 cut(s)	477, 543, 566, 579
Mva1269I	GAATGC	1 cut(s)	379
MwoI	GCNNNNNNNGC	2 cut(s)	250, 344
NcoI	CCATGG	1 cut(s)	626
NdeII	GATC	1 cut(s)	432
NlaIII	CATG	4 cut(s)	57, 91, 411, 630
NmuCI	GTSAC	2 cut(s)	59, 391
PciSI	GCTCTTC	1 cut(s)	67
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	276, 646
PflMI	CCANNNNNTGG	1 cut(s)	493
PkrI	GCNGC	3 cut(s)	177, 387, 512
Ppu21I	YACGTR	1 cut(s)	506
PpuMI	RGGWCCY	1 cut(s)	584
PsiI	TTATAA	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	122
Psp5II	RGGWCCY	1 cut(s)	584
PspEI	GGTNACC	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	584
PspPPI	RGGWCCY	1 cut(s)	584
PsrI	GAACNNNNNNTAC	2 cut(s)	412, 444
PstI	CTGCAG	1 cut(s)	387
RsaI	GTAC	4 cut(s)	359, 413, 421, 504
RsaNI	GTAC	4 cut(s)	358, 412, 420, 503
SacI	GAGCTC	1 cut(s)	122
SapI	GCTCTTC	1 cut(s)	67
SaqAI	TTAA	4 cut(s)	477, 543, 566, 579
SatI	GCNGC	3 cut(s)	176, 386, 511
Sau3AI	GATC	1 cut(s)	432
Sau96I	GGNCC	1 cut(s)	584
SduI	GDGCHC	1 cut(s)	122
SfcI	CTRYAG	1 cut(s)	383
SinI	GGWCC	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
SnaBI	TACGTA	1 cut(s)	506
Sse9I	AATT	4 cut(s)	111, 165, 573, 667
SsiI	CCGC	2 cut(s)	176, 511
SspI	AATATT	2 cut(s)	142, 257
SstI	GAGCTC	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	626
TaaI	ACNGT	2 cut(s)	149, 397
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	1 cut(s)	431
TaqII	GACCGA	1 cut(s)	6
TasI	AATT	4 cut(s)	111, 165, 573, 667
TatI	WGTACW	2 cut(s)	357, 419
TauI	GCSGC	2 cut(s)	178, 513
TfiI	GAWTC	2 cut(s)	276, 646
Tru1I	TTAA	4 cut(s)	477, 543, 566, 579
Tru9I	TTAA	4 cut(s)	477, 543, 566, 579
TseFI	GTSAC	2 cut(s)	59, 391
TseI	GCWGC	1 cut(s)	385
Tsp45I	GTSAC	2 cut(s)	59, 391
TspDTI	ATGAA	2 cut(s)	42, 615
Van91I	CCANNNNNTGG	1 cut(s)	493
VpaK11BI	GGWCC	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.