Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003323.1

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Reverse (-)

175385 .. 177374

Gene Structure 1990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003323.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgtgtcgaccaccaccatccgagaagaaatcgaagccaaagcccgccatgaggaacccacgatcccaagaagggaaaagacccgtccggctgccctcgccacacgcagatgaggccagaagcctacgccaacgcaggaggagccgccagacgagaagagaaactgacgacattccagaaatgttatttctcggagcaagtcctattgctgcctcatccagatattgcattagagttgtgatttatgcacatttcgctttggaagagttcaacaagcacaagaattcccaactgcaatttgtaagagtggtaaaggcatacaaccaggtgtttggtggttggacggttcgtttgctaaccttggaggcaattgatcctgagaatgtgatccagatttaccaagcaatagttaaggagcattgcactggcaaccctccagtgcagctcgaattgtttggtcttgttgctgataatggcaatgggagtttgttgaaacttattgacaacaggcattcaggccgaggaggaccagttgataatccgcgtgttgggcgagagatcttaatggttcaaaagacaaagagatatcctctggaggatgagatacgaaggaccctgcaaatcttgccccttaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

212

Amino Acids

24.26

Weight (kDa)

10.18

Isoelectric Point (pI)

60.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	7
AccII	CGCG	1 cut(s)	544
AciI	CCGC	3 cut(s)	45, 145, 542
AclWI	GGATC	3 cut(s)	57, 368, 382
AcsI	RAATTY	1 cut(s)	283
AfiI	CCNNNNNNNGG	3 cut(s)	51, 72, 548
AgsI	TTSAA	3 cut(s)	271, 493, 572
AjnI	CCWGG	1 cut(s)	324
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	1 cut(s)	445
AluI	AGCT	1 cut(s)	445
AlwI	GGATC	3 cut(s)	57, 368, 382
AoxI	GGCC	2 cut(s)	114, 517
ApeKI	GCWGC	3 cut(s)	91, 209, 442
ApoI	RAATTY	1 cut(s)	283
ArsI	GACNNNNNNTTYG	2 cut(s)	334, 366
AspS9I	GGNCC	2 cut(s)	527, 612
AvaII	GGWCC	2 cut(s)	527, 612
BbvI	GCAGC	3 cut(s)	78, 196, 454
BccI	CCATC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	326
BglII	AGATCT	1 cut(s)	558
BisI	GCNGC	4 cut(s)	92, 145, 210, 443
BlsI	GCNGC	4 cut(s)	93, 146, 211, 444
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	2 cut(s)	527, 612
BmgT120I	GGNCC	2 cut(s)	527, 612
BmiI	GGNNCC	3 cut(s)	56, 143, 614
BmrFI	CCNGG	1 cut(s)	326
BplI	GAGNNNNNCTC	2 cut(s)	574, 606
BpmI	CTGGAG	2 cut(s)	420, 614
BsaJI	CCNNGG	2 cut(s)	360, 520
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 72, 548
Bse1I	ACTGG	3 cut(s)	430, 437, 530
Bse3DI	GCAATG	2 cut(s)	418, 484
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	2 cut(s)	360, 520
BseGI	GGATG	3 cut(s)	17, 215, 604
BseLI	CCNNNNNNNGG	3 cut(s)	51, 72, 548
BseMI	GCAATG	2 cut(s)	418, 484
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	3 cut(s)	430, 437, 530
BseRI	GAGGAG	2 cut(s)	154, 537
BseXI	GCAGC	3 cut(s)	78, 196, 454
BsgI	GTGCAG	1 cut(s)	461
Bsh1236I	CGCG	1 cut(s)	544
BshFI	GGCC	2 cut(s)	116, 519
BsiSI	CCGG	1 cut(s)	88
BslI	CCNNNNNNNGG	3 cut(s)	51, 72, 548
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	116, 519
Bsp143I	GATC	4 cut(s)	62, 373, 387, 558
BspACI	CCGC	3 cut(s)	45, 145, 542
BspANI	GGCC	2 cut(s)	116, 519
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	1 cut(s)	544
BspLI	GGNNCC	3 cut(s)	56, 143, 614
BspPI	GGATC	3 cut(s)	57, 368, 382
BsrDI	GCAATG	2 cut(s)	418, 484
BsrI	ACTGG	3 cut(s)	430, 437, 530
BssECI	CCNNGG	2 cut(s)	360, 520
BssMI	GATC	4 cut(s)	62, 373, 387, 558
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	2 cut(s)	151, 258
BstAPI	GCANNNNNTGC	1 cut(s)	625
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	378
BstF5I	GGATG	3 cut(s)	17, 215, 604
BstFNI	CGCG	1 cut(s)	544
BstKTI	GATC	4 cut(s)	65, 376, 390, 561
BstMBI	GATC	4 cut(s)	62, 373, 387, 558
BstMWI	GCNNNNNNNGC	6 cut(s)	97, 113, 141, 254, 550, 625
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	324
BstUI	CGCG	1 cut(s)	544
BstV1I	GCAGC	3 cut(s)	78, 196, 454
BstX2I	RGATCY	1 cut(s)	558
BstXI	CCANNNNNNTGG	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	558
BsuRI	GGCC	2 cut(s)	116, 519
BtsCI	GGATG	3 cut(s)	17, 215, 604
BtsIMutI	CAGTG	2 cut(s)	423, 444
Cac8I	GCNNGC	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	527, 612
CsiI	ACCWGGT	1 cut(s)	324
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	8 cut(s)	37, 43, 91, 116, 123, 144, 445, 519
CviKI_1	RGCY	8 cut(s)	37, 43, 91, 116, 123, 144, 445, 519
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	4 cut(s)	64, 375, 389, 560
DpnII	GATC	4 cut(s)	62, 373, 387, 558
Eam1104I	CTCTTC	2 cut(s)	151, 258
EarI	CTCTTC	2 cut(s)	151, 258
Eco130I	CCWWGG	1 cut(s)	360
Eco32I	GATATC	1 cut(s)	587
Eco47I	GGWCC	2 cut(s)	527, 612
EcoO109I	RGGNCCY	1 cut(s)	612
EcoRI	GAATTC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	324
EcoRV	GATATC	1 cut(s)	587
EcoT14I	CCWWGG	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	1 cut(s)	52
FaiI	YATR	3 cut(s)	50, 246, 319
FatI	CATG	1 cut(s)	48
FauI	CCCGC	1 cut(s)	52
FblI	GTMKAC	1 cut(s)	7
Fnu4HI	GCNGC	4 cut(s)	92, 145, 210, 443
FokI	GGATG	3 cut(s)	4, 202, 611
Fsp4HI	GCNGC	4 cut(s)	92, 145, 210, 443
GluI	GCNGC	4 cut(s)	92, 145, 210, 443
GsuI	CTGGAG	2 cut(s)	420, 614
HaeIII	GGCC	2 cut(s)	116, 519
HapII	CCGG	1 cut(s)	88
Hin1II	CATG	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	8
HindII	GTYRAC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	2 cut(s)	22, 194
Hpy188III	TCNNGA	5 cut(s)	176, 219, 377, 391, 593
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	2 cut(s)	65, 603
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	6 cut(s)	228, 248, 295, 423, 442, 619
HpyF10VI	GCNNNNNNNGC	6 cut(s)	97, 113, 141, 254, 550, 625
HpyF3I	CTNAG	1 cut(s)	378
Hsp92II	CATG	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	62, 373, 387, 558
LmnI	GCTCC	3 cut(s)	141, 194, 415
Lsp1109I	GCAGC	3 cut(s)	78, 196, 454
MabI	ACCWGGT	1 cut(s)	324
MalI	GATC	4 cut(s)	64, 375, 389, 560
MboI	GATC	4 cut(s)	62, 373, 387, 558
MboII	GAAGA	3 cut(s)	37, 168, 275
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	1 cut(s)	558
MluCI	AATT	4 cut(s)	283, 296, 369, 449
MmeI	TCCRAC	1 cut(s)	320
MseI	TTAA	3 cut(s)	411, 563, 633
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	1 cut(s)	88
MspR9I	CCNGG	1 cut(s)	326
MunI	CAATTG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	1 cut(s)	544
MwoI	GCNNNNNNNGC	6 cut(s)	97, 113, 141, 254, 550, 625
NdeII	GATC	4 cut(s)	62, 373, 387, 558
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	3 cut(s)	56, 143, 614
NmeAIII	GCCGAG	1 cut(s)	545
PctI	GAATGC	1 cut(s)	511
PkrI	GCNGC	4 cut(s)	93, 146, 211, 444
PpuMI	RGGWCCY	1 cut(s)	612
Psp5II	RGGWCCY	1 cut(s)	612
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	3 cut(s)	56, 143, 614
PspPI	GGNCC	2 cut(s)	527, 612
PspPPI	RGGWCCY	1 cut(s)	612
PsuI	RGATCY	1 cut(s)	558
RseI	CAYNNNNRTG	1 cut(s)	108
SalI	GTCGAC	1 cut(s)	6
SaqAI	TTAA	3 cut(s)	411, 563, 633
SatI	GCNGC	4 cut(s)	92, 145, 210, 443
Sau3AI	GATC	4 cut(s)	62, 373, 387, 558
Sau96I	GGNCC	2 cut(s)	527, 612
ScrFI	CCNGG	1 cut(s)	326
SetI	ASST	3 cut(s)	330, 362, 447
SexAI	ACCWGGT	1 cut(s)	324
SinI	GGWCC	2 cut(s)	527, 612
SmiMI	CAYNNNNRTG	1 cut(s)	108
Sse9I	AATT	4 cut(s)	283, 296, 369, 449
SsiI	CCGC	3 cut(s)	45, 145, 542
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	3 cut(s)	7, 32, 447
TasI	AATT	4 cut(s)	283, 296, 369, 449
TauI	GCSGC	1 cut(s)	147
Tru1I	TTAA	3 cut(s)	411, 563, 633
Tru9I	TTAA	3 cut(s)	411, 563, 633
TscAI	CASTG	2 cut(s)	430, 444
TseI	GCWGC	3 cut(s)	91, 209, 442
TspRI	CASTG	2 cut(s)	430, 444
VpaK11BI	GGWCC	2 cut(s)	527, 612
XapI	RAATTY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.