Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Reverse (-)

13697834 .. 13700919

Gene Structure 3086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1149600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCAATTGTGGCTCTTCGCTCCGTGGTCGGGAAGTTGGGGAATAAATCTGTTTACAACAATATTAACAGAAGAAGAGTCATGCTTGGGGCTTTCCGGAGCTTGGATATCACCAACAACGGAAGTCAGGAGGTCCAGCCGGCGTTACAAGGGCATCGAAGTCCCGCTTTTTTTTCTCCTCGTGCTTTTCCTAATGGGGGCCTTGCAAACAAAGCTGAGGAGAGGAAGGATACCATTCCCTACTATGGAGTTGGACGGAGGTATGAAGCTGCAGCAGGAATGCTTCAACCTATTCCTGTGGATGATCCCAATGTTGTAACTCTTGCCCAGTTCGCAGTGACAAGCTTCAACCAGCAAAAGAATGCCCAACTGCAGTTTCTGAGAGTGGTGATGGCAAGCGATCAGGGGGCACTTCCTTGTTGCCTTTACTATCTGACACTGGAGGCTGTTGACGCTGGTGCCGTGAAAGTTTATCGAGCACAAGTTTCTGTAAATTTGCTTGATGACAGCCGGGAGACAACAGTTTTTGGTCTCGTTAGTGATAATGGTGGTTTGCTAAAGCTAATTGATAACAGAGACAGATGCGAGTCAAGATTAACAAATAACAGAGATTATGTCCGTCGGTACATTTGGGACAAGTTGATAAAAGGTGATCATGAAAGGATTCCAGTAGATGTAGAGGGACCTCCCTTGGAGGAAGTAACGCTGAGCAACTTGCACAAGTGGACTCTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

27.36

Weight (kDa)

8.96

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	93 - 154	2.1e-06	Cystatin domain
SQAPI	PF16845	100 - 176	5.2e-10	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	458
AccIII	TCCGGA	1 cut(s)	96
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	493
AfaI	GTAC	1 cut(s)	626
AfiI	CCNNNNNNNGG	4 cut(s)	30, 103, 197, 245
AgsI	TTSAA	2 cut(s)	287, 349
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AluBI	AGCT	5 cut(s)	102, 215, 269, 345, 562
AluI	AGCT	5 cut(s)	102, 215, 269, 345, 562
Alw21I	GWGCWC	1 cut(s)	481
Alw26I	GTCTC	3 cut(s)	509, 536, 570
AlwI	GGATC	1 cut(s)	299
AlwNI	CAGNNNCTG	1 cut(s)	379
Aor13HI	TCCGGA	1 cut(s)	96
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	269, 272
ApoI	RAATTY	1 cut(s)	493
Asp700I	GAANNNNTTC	1 cut(s)	663
AspS9I	GGNCC	3 cut(s)	133, 199, 683
AsuC2I	CCSGG	1 cut(s)	512
AsuHPI	GGTGA	3 cut(s)	103, 400, 662
AvaII	GGWCC	2 cut(s)	133, 683
BaeGI	GKGCMC	1 cut(s)	412
BanI	GGYRCC	1 cut(s)	458
BauI	CACGAG	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	481
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	256, 284
BccI	CCATC	1 cut(s)	385
BceAI	ACGGC	1 cut(s)	446
BciVI	GTATCC	1 cut(s)	223
BclI	TGATCA	1 cut(s)	652
BcnI	CCSGG	1 cut(s)	512
BcoDI	GTCTC	3 cut(s)	509, 536, 570
BfmI	CTRYAG	2 cut(s)	270, 371
BfuI	GTATCC	1 cut(s)	223
BisI	GCNGC	2 cut(s)	270, 273
BlpI	GCTNAGC	1 cut(s)	707
BlsI	GCNGC	2 cut(s)	271, 274
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	2 cut(s)	133, 683
BmgT120I	GGNCC	3 cut(s)	133, 199, 683
BmiI	GGNNCC	3 cut(s)	200, 460, 684
BmrFI	CCNGG	1 cut(s)	512
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	2 cut(s)	163, 572
BmuI	ACTGGG	1 cut(s)	322
BpmI	CTGGAG	1 cut(s)	461
Bpu10I	CCTNAGC	1 cut(s)	216
Bpu1102I	GCTNAGC	1 cut(s)	707
BpuMI	CCSGG	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	24, 690
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 103, 197, 245
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	3 cut(s)	328, 444, 668
BseAI	TCCGGA	1 cut(s)	96
BseDI	CCNNGG	2 cut(s)	24, 690
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	4 cut(s)	30, 103, 197, 245
BseMII	CTCAG	3 cut(s)	207, 371, 698
BseNI	ACTGG	3 cut(s)	328, 444, 668
BseRI	GAGGAG	2 cut(s)	168, 233
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	2 cut(s)	256, 284
BshFI	GGCC	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	458
BsiHKAI	GWGCWC	1 cut(s)	481
BsiSI	CCGG	3 cut(s)	97, 140, 511
BslFI	GGGAC	3 cut(s)	147, 647, 696
BslI	CCNNNNNNNGG	4 cut(s)	30, 103, 197, 245
BsmAI	GTCTC	3 cut(s)	509, 536, 570
BsmFI	GGGAC	3 cut(s)	147, 647, 696
BsmI	GAATGC	2 cut(s)	285, 367
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	536
Bsp1286I	GDGCHC	2 cut(s)	412, 481
Bsp13I	TCCGGA	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	304, 400, 652
Bsp1720I	GCTNAGC	1 cut(s)	707
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	3 cut(s)	208, 372, 699
BspEI	TCCGGA	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	655
BspLI	GGNNCC	3 cut(s)	200, 460, 684
BspMAI	CTGCAG	2 cut(s)	274, 375
BspPI	GGATC	1 cut(s)	299
BspQI	GCTCTTC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	458
BspTNI	GGTCTC	1 cut(s)	536
BsrFI	RCCGGY	1 cut(s)	139
BsrI	ACTGG	3 cut(s)	328, 444, 668
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	24, 690
BssMI	GATC	3 cut(s)	304, 400, 652
BssSI	CACGAG	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	690
Bst2BI	CACGAG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	2 cut(s)	21, 70
BstC8I	GCNNGC	2 cut(s)	141, 397
BstDEI	CTNAG	3 cut(s)	216, 380, 707
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	3 cut(s)	307, 403, 655
BstMAI	GTCTC	3 cut(s)	509, 536, 570
BstMBI	GATC	3 cut(s)	304, 400, 652
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 212, 332, 452
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	2 cut(s)	270, 371
BstSLI	GKGCMC	1 cut(s)	412
BstV1I	GCAGC	2 cut(s)	256, 284
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	307
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	342, 437
Cac8I	GCNNGC	2 cut(s)	141, 397
CaiI	CAGNNNCTG	1 cut(s)	379
CciI	TCATGA	1 cut(s)	655
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	3 cut(s)	133, 199, 683
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	1 cut(s)	625
CviAII	CATG	2 cut(s)	82, 656
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	3 cut(s)	216, 380, 707
DpnI	GATC	3 cut(s)	306, 402, 654
DpnII	GATC	3 cut(s)	304, 400, 652
Eam1104I	CTCTTC	2 cut(s)	21, 70
EarI	CTCTTC	2 cut(s)	21, 70
Eco130I	CCWWGG	1 cut(s)	690
Eco31I	GGTCTC	1 cut(s)	536
Eco32I	GATATC	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	133, 683
EcoO109I	RGGNCCY	2 cut(s)	199, 683
EcoRV	GATATC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	690
FaeI	CATG	2 cut(s)	85, 659
FaiI	YATR	5 cut(s)	83, 246, 264, 615, 657
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
FaqI	GGGAC	3 cut(s)	147, 647, 696
FatI	CATG	2 cut(s)	81, 655
FauI	CCCGC	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	652
Fnu4HI	GCNGC	2 cut(s)	270, 273
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	270, 273
GluI	GCNGC	2 cut(s)	270, 273
GsuI	CTGGAG	1 cut(s)	461
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	3 cut(s)	97, 140, 511
HgaI	GACGC	1 cut(s)	461
Hin1II	CATG	2 cut(s)	85, 659
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	343
HinfI	GANTC	4 cut(s)	78, 587, 664, 727
HpaII	CCGG	3 cut(s)	97, 140, 511
HphI	GGTGA	3 cut(s)	103, 400, 662
Hpy166II	GTNNAC	3 cut(s)	55, 451, 726
Hpy188I	TCNGA	2 cut(s)	381, 435
Hpy188III	TCNNGA	5 cut(s)	31, 97, 128, 591, 656
Hpy8I	GTNNAC	3 cut(s)	55, 451, 726
Hpy99I	CGWCG	1 cut(s)	624
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4V	TGCA	4 cut(s)	206, 272, 373, 718
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 212, 332, 452
HpyF3I	CTNAG	3 cut(s)	216, 380, 707
Hsp92II	CATG	2 cut(s)	85, 659
Kpn2I	TCCGGA	1 cut(s)	96
KroI	GCCGGC	1 cut(s)	139
KroNI	GCCGGC	1 cut(s)	141
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	3 cut(s)	304, 400, 652
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	2 cut(s)	26, 99
Lsp1109I	GCAGC	2 cut(s)	256, 284
LweI	GCATC	2 cut(s)	163, 572
MaeIII	GTNAC	4 cut(s)	144, 316, 337, 700
MalI	GATC	3 cut(s)	306, 402, 654
MboI	GATC	3 cut(s)	304, 400, 652
MboII	GAAGA	3 cut(s)	8, 84, 87
MfeI	CAATTG	1 cut(s)	6
MhlI	GDGCHC	2 cut(s)	412, 481
MluCI	AATT	3 cut(s)	6, 493, 564
MlyI	GAGTC	3 cut(s)	87, 596, 721
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	9 cut(s)	124, 189, 211, 216, 252, 436, 673, 688, 696
MroI	TCCGGA	1 cut(s)	96
MroNI	GCCGGC	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	3 cut(s)	66, 596, 736
MspI	CCGG	3 cut(s)	97, 140, 511
MspR9I	CCNGG	1 cut(s)	512
MunI	CAATTG	1 cut(s)	6
Mva1269I	GAATGC	2 cut(s)	285, 367
MwoI	GCNNNNNNNGC	4 cut(s)	11, 212, 332, 452
NaeI	GCCGGC	1 cut(s)	141
NciI	CCSGG	1 cut(s)	512
NdeII	GATC	3 cut(s)	304, 400, 652
NgoMIV	GCCGGC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	85, 659
NlaIV	GGNNCC	3 cut(s)	200, 460, 684
NmuCI	GTSAC	1 cut(s)	337
PagI	TCATGA	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PctI	GAATGC	2 cut(s)	285, 367
PdiI	GCCGGC	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	1 cut(s)	664
PkrI	GCNGC	2 cut(s)	271, 274
PleI	GAGTC	3 cut(s)	86, 595, 721
PpsI	GAGTC	3 cut(s)	86, 595, 721
PpuMI	RGGWCCY	1 cut(s)	683
Psp5II	RGGWCCY	1 cut(s)	683
PspN4I	GGNNCC	3 cut(s)	200, 460, 684
PspPI	GGNCC	3 cut(s)	133, 199, 683
PspPPI	RGGWCCY	1 cut(s)	683
PstI	CTGCAG	2 cut(s)	274, 375
PstNI	CAGNNNCTG	1 cut(s)	379
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	66, 596, 736
SatI	GCNGC	2 cut(s)	270, 273
Sau3AI	GATC	3 cut(s)	304, 400, 652
Sau96I	GGNCC	3 cut(s)	133, 199, 683
SchI	GAGTC	3 cut(s)	87, 596, 721
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	2 cut(s)	412, 481
SfaNI	GCATC	2 cut(s)	163, 572
SfcI	CTRYAG	2 cut(s)	270, 371
SinI	GGWCC	2 cut(s)	133, 683
Sse9I	AATT	3 cut(s)	6, 493, 564
SsiI	CCGC	1 cut(s)	165
SspI	AATATT	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	1 cut(s)	523
TaqI	TCGA	2 cut(s)	157, 475
TasI	AATT	3 cut(s)	6, 493, 564
TfiI	GAWTC	1 cut(s)	664
Tru1I	TTAA	3 cut(s)	66, 596, 736
Tru9I	TTAA	3 cut(s)	66, 596, 736
TscAI	CASTG	2 cut(s)	342, 444
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	2 cut(s)	269, 272
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	2 cut(s)	279, 672
TspGWI	ACGGA	4 cut(s)	13, 135, 271, 608
TspRI	CASTG	2 cut(s)	342, 444
VpaK11BI	GGWCC	2 cut(s)	133, 683
XapI	RAATTY	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.