RLG00000020024

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002040
Physical Location & Seq
Forward (+)
60193111 .. 60195230
2120 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020024

Sequence Viewer

Length: 798 bp
ATGGGTATCAATGAATCAATCAATCATACTCTTCCACCACAACTTGATAGCCAGAGTGCAGACGGTCGCGGAAGTGAAAGAGGGCTCGAAGCCGATCGGGTTCAGATAGAGATCGATCGAGGCAATATAATGGCTTTTCGGTCTGTGCTTGCAAAGCTGGGGAATAATTGTGTTAAAGGGAGTGAAAGAAGAAGATTGGTTGCGGCCTTTGACACCAGAACCCTACTCAAGTATCATAACATTTGGGATGATGATGAATACCAACAGCTGATGAACGATCGCATTGAACGTCAACGTGAAGCTGGTCCTTGGCGGAGGCGTGCTCGTGAACGTTTTCGTGTTCCGCCACATCGTCAACCTACGGATAATCCCAACGTTATGGCTTATGCCCATTTGGCCGTGGAAGAGTTCAACAAACAAAAGAATGCACAACTTCAATTTGTGAGAGCGGTGAAGGCATATTGCCAGGAGTACGATGATACCTGGGGAGATAAGTACTATTACCTAACGTTGGAGGCAGTTGATGCTCAAGTTGTTAAAACATACCAAGCAGTAGTTCATGACTCTACTGAGCCATCGCTCCACATTTTTGGTCTTGTTACTGATAATGGTTTGTTGCAACTAACTGATAACCATGTTCTTCCTTCACTTTATTGCACACTTGACGACCGAGATGTTCAACGCAAGGGAAGAGGATATTCTGATGAAACAGAGATAGAGGTCACGCTGCAGACAAGGGGAGGATATTTTCTCCAGGATGAGATACTTGGCTCGTTGCACGGACTTCCCTCCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

30.51

Weight (kDa)

5.65

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQAPI PF16845 122 - 189 1.4e-08 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 449
AccII CGCG 1 cut(s) 69
AciI CCGC 5 cut(s) 69, 203, 313, 344, 449
AclI AACGTT 3 cut(s) 331, 375, 509
AcoI YGGCCR 1 cut(s) 396
AfaI GTAC 2 cut(s) 473, 497
AfiI CCNNNNNNNGG 1 cut(s) 511
AgsI TTSAA 4 cut(s) 287, 412, 437, 680
AjnI CCWGG 3 cut(s) 465, 482, 753
AjuI GAANNNNNNNTTGG 2 cut(s) 540, 572
AluBI AGCT 3 cut(s) 157, 268, 302
AluI AGCT 3 cut(s) 157, 268, 302
Alw21I GWGCWC 1 cut(s) 325
AoxI GGCC 2 cut(s) 204, 396
ApeKI GCWGC 1 cut(s) 727
Asp700I GAANNNNTTC 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 463
AvaII GGWCC 1 cut(s) 305
BaeI ACNNNNGTAYC 2 cut(s) 215, 248
BanII GRGCYC 1 cut(s) 87
BauI CACGAG 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 1 cut(s) 714
BccI CCATC 1 cut(s) 583
BceAI ACGGC 1 cut(s) 383
BciT130I CCWGG 3 cut(s) 467, 484, 755
BfmI CTRYAG 1 cut(s) 728
BglI GCCNNNNNGGC 1 cut(s) 395
BisI GCNGC 2 cut(s) 204, 728
BlsI GCNGC 2 cut(s) 205, 729
BmcAI AGTACT 1 cut(s) 497
Bme1390I CCNGG 3 cut(s) 467, 484, 755
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 305
BmrFI CCNGG 3 cut(s) 467, 484, 755
BmsI GCATC 1 cut(s) 514
BplI GAGNNNNNCTC 2 cut(s) 307, 339
BpmI CTGGAG 1 cut(s) 737
BpuEI CTTGAG 2 cut(s) 212, 513
Bsa29I ATCGAT 1 cut(s) 114
BsaBI GATNNNNATC 1 cut(s) 110
BsaJI CCNNGG 3 cut(s) 308, 399, 483
Bsc4I CCNNNNNNNGG 1 cut(s) 511
Bse8I GATNNNNATC 1 cut(s) 110
BseBI CCWGG 3 cut(s) 467, 484, 755
BseCI ATCGAT 1 cut(s) 114
BseDI CCNNGG 3 cut(s) 308, 399, 483
BseGI GGATG 2 cut(s) 253, 763
BseJI GATNNNNATC 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMII CTCAG 1 cut(s) 561
BseXI GCAGC 1 cut(s) 714
BseYI CCCAGC 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 69
Bsh1285I CGRYCG 5 cut(s) 67, 97, 118, 280, 670
BshFI GGCC 2 cut(s) 206, 398
BshVI ATCGAT 1 cut(s) 114
BsiEI CGRYCG 5 cut(s) 67, 97, 118, 280, 670
BsiHKAI GWGCWC 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 511
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 2 cut(s) 206, 398
Bsp1286I GDGCHC 2 cut(s) 87, 325
Bsp143I GATC 4 cut(s) 94, 111, 115, 277
BspACI CCGC 5 cut(s) 69, 203, 313, 344, 449
BspANI GGCC 2 cut(s) 206, 398
BspCNI CTCAG 1 cut(s) 562
BspDI ATCGAT 1 cut(s) 114
BspFNI CGCG 1 cut(s) 69
BspHI TCATGA 1 cut(s) 559
BspMAI CTGCAG 1 cut(s) 732
BsrBI CCGCTC 1 cut(s) 449
BssECI CCNNGG 3 cut(s) 308, 399, 483
BssMI GATC 4 cut(s) 94, 111, 115, 277
BssSI CACGAG 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 308
Bst2BI CACGAG 1 cut(s) 324
Bst2UI CCWGG 3 cut(s) 467, 484, 755
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 3 cut(s) 36, 399, 685
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 150, 321
BstDEI CTNAG 1 cut(s) 570
BstDSI CCRYGG 1 cut(s) 399
BstF5I GGATG 2 cut(s) 253, 763
BstFNI CGCG 1 cut(s) 69
BstKTI GATC 4 cut(s) 97, 114, 118, 280
BstMBI GATC 4 cut(s) 94, 111, 115, 277
BstMCI CGRYCG 5 cut(s) 67, 97, 118, 280, 670
BstMWI GCNNNNNNNGC 4 cut(s) 154, 395, 455, 524
BstNI CCWGG 3 cut(s) 467, 484, 755
BstSCI CCNGG 3 cut(s) 465, 482, 753
BstSFI CTRYAG 1 cut(s) 728
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 714
BstXI CCANNNNNNTGG 2 cut(s) 379, 590
Bsu15I ATCGAT 1 cut(s) 114
BsuRI GGCC 2 cut(s) 206, 398
BsuTUI ATCGAT 1 cut(s) 114
BtgI CCRYGG 1 cut(s) 399
BtgZI GCGATG 1 cut(s) 561
BtsCI GGATG 2 cut(s) 253, 763
Cac8I GCNNGC 2 cut(s) 150, 321
CciI TCATGA 1 cut(s) 559
Cfr13I GGNCC 1 cut(s) 305
ClaI ATCGAT 1 cut(s) 114
Csp6I GTAC 2 cut(s) 472, 496
CviAII CATG 2 cut(s) 560, 635
CviQI GTAC 2 cut(s) 472, 496
DdeI CTNAG 1 cut(s) 570
DpnI GATC 4 cut(s) 96, 113, 117, 279
DpnII GATC 4 cut(s) 94, 111, 115, 277
EaeI YGGCCR 1 cut(s) 396
Eam1104I CTCTTC 3 cut(s) 36, 399, 685
EarI CTCTTC 3 cut(s) 36, 399, 685
EciI GGCGGA 2 cut(s) 328, 333
Eco130I CCWWGG 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 305
EcoRII CCWGG 3 cut(s) 465, 482, 753
EcoT14I CCWWGG 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 2 cut(s) 563, 638
FaiI YATR 9 cut(s) 27, 128, 237, 380, 387, 460, 544, 561, 636
FatI CATG 2 cut(s) 559, 634
Fnu4HI GCNGC 2 cut(s) 204, 728
FokI GGATG 2 cut(s) 260, 770
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 2 cut(s) 204, 728
GluI GCNGC 2 cut(s) 204, 728
GsaI CCCAGC 1 cut(s) 161
GsuI CTGGAG 1 cut(s) 737
HaeIII GGCC 2 cut(s) 206, 398
Hin1II CATG 2 cut(s) 563, 638
HincII GTYRAC 2 cut(s) 293, 356
HindII GTYRAC 2 cut(s) 293, 356
HinfI GANTC 2 cut(s) 14, 563
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 3 cut(s) 293, 329, 356
Hpy188I TCNGA 2 cut(s) 105, 703
Hpy188III TCNNGA 2 cut(s) 326, 560
Hpy8I GTNNAC 3 cut(s) 293, 329, 356
HpyAV CCTTC 2 cut(s) 448, 654
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 5 cut(s) 289, 295, 331, 375, 509
HpyCH4V TGCA 7 cut(s) 59, 152, 428, 619, 657, 730, 778
HpyF10VI GCNNNNNNNGC 4 cut(s) 154, 395, 455, 524
HpyF3I CTNAG 1 cut(s) 570
HpySE526I ACGT 5 cut(s) 289, 295, 331, 375, 509
Hsp92II CATG 2 cut(s) 563, 638
Kzo9I GATC 4 cut(s) 94, 111, 115, 277
LmnI GCTCC 1 cut(s) 585
Lsp1109I GCAGC 1 cut(s) 714
LweI GCATC 1 cut(s) 514
MaeII ACGT 5 cut(s) 289, 295, 331, 375, 509
MaeIII GTNAC 2 cut(s) 598, 721
MalI GATC 4 cut(s) 96, 113, 117, 279
MbiI CCGCTC 1 cut(s) 449
MboI GATC 4 cut(s) 94, 111, 115, 277
MboII GAAGA 6 cut(s) 23, 201, 204, 416, 632, 702
MhlI GDGCHC 2 cut(s) 87, 325
MluCI AATT 2 cut(s) 166, 437
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 7 cut(s) 74, 113, 309, 508, 686, 712, 734
MroXI GAANNNNTTC 1 cut(s) 333
MseI TTAA 2 cut(s) 174, 537
MspA1I CMGCKG 1 cut(s) 268
MspR9I CCNGG 3 cut(s) 467, 484, 755
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 3 cut(s) 467, 484, 755
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 4 cut(s) 154, 395, 455, 524
NdeII GATC 4 cut(s) 94, 111, 115, 277
NlaIII CATG 2 cut(s) 563, 638
NmuCI GTSAC 1 cut(s) 721
PagI TCATGA 1 cut(s) 559
PcsI WCGNNNNNNNCGW 1 cut(s) 286
PctI GAATGC 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 1 cut(s) 14
PfoI TCCNGGA 1 cut(s) 753
PkrI GCNGC 2 cut(s) 205, 729
Ple19I CGATCG 3 cut(s) 97, 118, 280
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
Psp1406I AACGTT 3 cut(s) 331, 375, 509
Psp6I CCWGG 3 cut(s) 465, 482, 753
PspFI CCCAGC 1 cut(s) 157
PspGI CCWGG 3 cut(s) 465, 482, 753
PspPI GGNCC 1 cut(s) 305
PstI CTGCAG 1 cut(s) 732
PvuI CGATCG 3 cut(s) 97, 118, 280
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 2 cut(s) 473, 497
RsaNI GTAC 2 cut(s) 472, 496
SaqAI TTAA 2 cut(s) 174, 537
SatI GCNGC 2 cut(s) 204, 728
Sau3AI GATC 4 cut(s) 94, 111, 115, 277
Sau96I GGNCC 1 cut(s) 305
ScaI AGTACT 1 cut(s) 497
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 3 cut(s) 467, 484, 755
SduI GDGCHC 2 cut(s) 87, 325
SfaNI GCATC 1 cut(s) 514
SfcI CTRYAG 1 cut(s) 728
SinI GGWCC 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 227, 528
SmoI CTYRAG 2 cut(s) 227, 528
Sse9I AATT 2 cut(s) 166, 437
SsiI CCGC 5 cut(s) 69, 203, 313, 344, 449
StyD4I CCNGG 3 cut(s) 465, 482, 753
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 5 cut(s) 292, 298, 334, 378, 512
TaqI TCGA 3 cut(s) 87, 114, 118
TaqII GACCGA 2 cut(s) 129, 684
TasI AATT 2 cut(s) 166, 437
TatI WGTACW 1 cut(s) 495
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 2 cut(s) 174, 537
Tru9I TTAA 2 cut(s) 174, 537
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 1 cut(s) 727
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 5 cut(s) 27, 270, 287, 548, 720
TspGWI ACGGA 2 cut(s) 377, 795
VpaK11BI GGWCC 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 333
ZrmI AGTACT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.