Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Reverse (-)

8301637 .. 8303469

Gene Structure 1833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG051800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGATGATGATCCCCAGATTACAGCTACTGCTGCTTTTGCGGTGGCAGAATTCAACAAGCAAAAGAATGCCCAGCTGCGATTCATTAGAGCAGTAAAGGGATTTCGCAGTTGTTTTGATTACTTTCTAACTATGGAGGCAGTCGATGCTCATGCGGTTAGAACTTTCCAAGCAGTAGTCAAAGAAAAGCGCATGCATCCCTATGAACCCTTTAAGGTCCATGAACCCTTTAAGGTCCTATTATTTGGTCTTGTTGCTGATAACGGCAATGGGAATTTGTTAAATCTAATTGATAACAGAAGGAATGGACCGTATGGTGAATGTCTATATGATGATCGAGGTTTTACAACCACAGTTGGGGATTACAAGTTAGAAGCTCCAATGAAAGCAAAAAGATGTTCTCTTGAGGGTGAGATACTAAGCTCCTTGCACATGTTGCAAGTCCAAAAAGGATCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

153

Amino Acids

17.29

Weight (kDa)

7.72

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	3 - 68	2.5e-10	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	41, 155
AclWI	GGATC	2 cut(s)	5, 460
AcsI	RAATTY	2 cut(s)	50, 274
AfiI	CCNNNNNNNGG	1 cut(s)	357
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	1 cut(s)	55
AluBI	AGCT	4 cut(s)	26, 76, 377, 423
AluI	AGCT	4 cut(s)	26, 76, 377, 423
AlwI	GGATC	2 cut(s)	5, 460
AlwNI	CAGNNNCTG	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	32, 76
ApoI	RAATTY	2 cut(s)	50, 274
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	3 cut(s)	217, 235, 308
AsuHPI	GGTGA	2 cut(s)	329, 422
AvaII	GGWCC	3 cut(s)	217, 235, 308
BbvI	GCAGC	2 cut(s)	19, 63
BceAI	ACGGC	1 cut(s)	280
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BisI	GCNGC	2 cut(s)	33, 77
BlsI	GCNGC	2 cut(s)	34, 78
Bme18I	GGWCC	3 cut(s)	217, 235, 308
BmgT120I	GGNCC	3 cut(s)	217, 235, 308
BmsI	GCATC	2 cut(s)	136, 205
BpuEI	CTTGAG	1 cut(s)	425
BsaBI	GATNNNNATC	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	274
Bse8I	GATNNNNATC	1 cut(s)	9
BseGI	GGATG	2 cut(s)	10, 196
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	19, 63
BseYI	CCCAGC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmI	GAATGC	1 cut(s)	73
Bsp143I	GATC	3 cut(s)	10, 334, 452
BspACI	CCGC	2 cut(s)	41, 155
BspPI	GGATC	2 cut(s)	5, 460
BsrDI	GCAATG	1 cut(s)	274
BssMI	GATC	3 cut(s)	10, 334, 452
Bst4CI	ACNGT	2 cut(s)	312, 355
BstAPI	GCANNNNNTGC	2 cut(s)	146, 436
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	419
BstF5I	GGATG	2 cut(s)	10, 196
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	3 cut(s)	13, 337, 455
BstMBI	GATC	3 cut(s)	10, 334, 452
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 38, 146, 436
BstNSI	RCATGY	2 cut(s)	196, 436
BstV1I	GCAGC	2 cut(s)	19, 63
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
BtsCI	GGATG	2 cut(s)	10, 196
Cac8I	GCNNGC	1 cut(s)	194
CaiI	CAGNNNCTG	1 cut(s)	29
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	3 cut(s)	217, 235, 308
CviAII	CATG	4 cut(s)	152, 193, 221, 433
CviJI	RGCY	4 cut(s)	26, 76, 377, 423
CviKI_1	RGCY	4 cut(s)	26, 76, 377, 423
DdeI	CTNAG	1 cut(s)	419
DpnI	GATC	3 cut(s)	12, 336, 454
DpnII	GATC	3 cut(s)	10, 334, 452
Eco47I	GGWCC	3 cut(s)	217, 235, 308
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRI	GAATTC	1 cut(s)	50
EcoT22I	ATGCAT	1 cut(s)	198
FaeI	CATG	4 cut(s)	155, 196, 224, 436
FaiI	YATR	9 cut(s)	134, 153, 194, 204, 222, 315, 328, 330, 434
FatI	CATG	4 cut(s)	151, 192, 220, 432
Fnu4HI	GCNGC	2 cut(s)	33, 77
FokI	GGATG	2 cut(s)	17, 183
Fsp4HI	GCNGC	2 cut(s)	33, 77
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	2 cut(s)	33, 77
GsaI	CCCAGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	155, 196, 224, 436
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	81
HphI	GGTGA	2 cut(s)	329, 422
Hpy188III	TCNNGA	1 cut(s)	404
HpyAV	CCTTC	1 cut(s)	294
HpyCH4III	ACNGT	2 cut(s)	312, 355
HpyCH4V	TGCA	3 cut(s)	196, 430, 439
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 38, 146, 436
HpyF3I	CTNAG	1 cut(s)	419
Hsp92II	CATG	4 cut(s)	155, 196, 224, 436
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	10, 334, 452
LmnI	GCTCC	2 cut(s)	382, 428
LpnPI	CCDG	2 cut(s)	29, 86
Lsp1109I	GCAGC	2 cut(s)	19, 63
LweI	GCATC	2 cut(s)	136, 205
MalI	GATC	3 cut(s)	12, 336, 454
MboI	GATC	3 cut(s)	10, 334, 452
MflI	RGATCY	1 cut(s)	452
MluCI	AATT	3 cut(s)	50, 274, 288
MnlI	CCTC	3 cut(s)	130, 332, 400
Mph1103I	ATGCAT	1 cut(s)	198
MseI	TTAA	3 cut(s)	213, 231, 281
MslI	CAYNNNNRTG	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	76
Mva1269I	GAATGC	1 cut(s)	73
MwoI	GCNNNNNNNGC	4 cut(s)	32, 38, 146, 436
NdeII	GATC	3 cut(s)	10, 334, 452
NlaIII	CATG	4 cut(s)	155, 196, 224, 436
NsiI	ATGCAT	1 cut(s)	198
NspI	RCATGY	2 cut(s)	196, 436
PaeI	GCATGC	1 cut(s)	196
PciI	ACATGT	1 cut(s)	432
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	81
PkrI	GCNGC	2 cut(s)	34, 78
PpuMI	RGGWCCY	1 cut(s)	235
PscI	ACATGT	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	72
PspPI	GGNCC	3 cut(s)	217, 235, 308
PspPPI	RGGWCCY	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	452
PvuII	CAGCTG	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	213, 231, 281
SatI	GCNGC	2 cut(s)	33, 77
Sau3AI	GATC	3 cut(s)	10, 334, 452
Sau96I	GGNCC	3 cut(s)	217, 235, 308
SetI	ASST	7 cut(s)	28, 78, 219, 237, 343, 379, 425
SfaNI	GCATC	2 cut(s)	136, 205
SinI	GGWCC	3 cut(s)	217, 235, 308
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SphI	GCATGC	1 cut(s)	196
Sse9I	AATT	3 cut(s)	50, 274, 288
SsiI	CCGC	2 cut(s)	41, 155
TaaI	ACNGT	2 cut(s)	312, 355
TaqI	TCGA	2 cut(s)	144, 337
TasI	AATT	3 cut(s)	50, 274, 288
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	3 cut(s)	213, 231, 281
Tru9I	TTAA	3 cut(s)	213, 231, 281
TseI	GCWGC	2 cut(s)	32, 76
TspDTI	ATGAA	4 cut(s)	73, 219, 237, 398
VpaK11BI	GGWCC	3 cut(s)	217, 235, 308
XapI	RAATTY	2 cut(s)	50, 274
XceI	RCATGY	2 cut(s)	196, 436
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.