Rh5DG539600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002040
Physical Location & Seq
Reverse (-)
83123260 .. 83123550
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG539600.1

Sequence Viewer

Length: 291 bp
ATGGCAACGGCTATTCGATATATGCTTGGAAATTTTGGGACTAGAAGATCAGTAGCAAACATGGTCATGCCTTTCGAAATCAGAACCCTAAATCTTAATCATGATCAGGACGTGTTTCCAGTTTCGATGCCTCATCTAAATTTGGGCTATTCCTCTCGTCACCCTCTTCATTTTCTTTATGTATTACACCGTCCGTGCATTCAAAGGCGGCCTAAGAAAGTGGAACCTGACCACCGAGTATGTGAAACTGGCCGGAAAGCCGGAACTGACCTAGCTAGCTCAATGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.03

Weight (kDa)

10.02

Isoelectric Point (pI)

59.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 208
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 2 cut(s) 31, 139
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 1 cut(s) 203
AjiI CACGTC 1 cut(s) 112
AluBI AGCT 2 cut(s) 275, 279
AluI AGCT 2 cut(s) 275, 279
AoxI GGCC 2 cut(s) 209, 250
ApoI RAATTY 2 cut(s) 31, 139
AsuHPI GGTGA 1 cut(s) 152
AsuII TTCGAA 1 cut(s) 75
AsuNHI GCTAGC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 24
BclI TGATCA 1 cut(s) 103
BfaI CTAG 3 cut(s) 42, 272, 276
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
BmgBI CACGTC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 225
BmsI GCATC 1 cut(s) 117
BmtI GCTAGC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 75
Bse1I ACTGG 2 cut(s) 119, 253
BseNI ACTGG 2 cut(s) 119, 253
BshFI GGCC 2 cut(s) 211, 252
BsiSI CCGG 2 cut(s) 253, 261
BslFI GGGAC 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 52
BsmI GAATGC 1 cut(s) 198
BsnI GGCC 2 cut(s) 211, 252
Bsp119I TTCGAA 1 cut(s) 75
Bsp143I GATC 2 cut(s) 47, 103
BspACI CCGC 1 cut(s) 208
BspANI GGCC 2 cut(s) 211, 252
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 225
BspOI GCTAGC 1 cut(s) 279
BspT104I TTCGAA 1 cut(s) 75
BsrI ACTGG 2 cut(s) 119, 253
BssMI GATC 2 cut(s) 47, 103
Bst4CI ACNGT 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 171
BstBI TTCGAA 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 213
BstKTI GATC 2 cut(s) 50, 106
BstMBI GATC 2 cut(s) 47, 103
BsuRI GGCC 2 cut(s) 211, 252
BtrI CACGTC 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 277
CciI TCATGA 1 cut(s) 100
CviAII CATG 3 cut(s) 61, 67, 101
CviJI RGCY 7 cut(s) 11, 147, 211, 252, 260, 275, 279
CviKI_1 RGCY 7 cut(s) 11, 147, 211, 252, 260, 275, 279
DdeI CTNAG 1 cut(s) 213
DpnI GATC 2 cut(s) 49, 105
DpnII GATC 2 cut(s) 47, 103
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
FaeI CATG 3 cut(s) 64, 70, 104
FaiI YATR 7 cut(s) 21, 23, 62, 68, 102, 180, 241
FaqI GGGAC 1 cut(s) 52
FatI CATG 3 cut(s) 60, 66, 100
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 209
FspBI CTAG 3 cut(s) 42, 272, 276
GluI GCNGC 1 cut(s) 209
HaeIII GGCC 2 cut(s) 211, 252
HapII CCGG 2 cut(s) 253, 261
Hin1II CATG 3 cut(s) 64, 70, 104
HpaII CCGG 2 cut(s) 253, 261
HphI GGTGA 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 2 cut(s) 101, 107
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 198
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 3 cut(s) 64, 70, 104
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 47, 103
LpnPI CCDG 6 cut(s) 92, 132, 234, 240, 266, 274
LweI GCATC 1 cut(s) 117
MaeI CTAG 3 cut(s) 42, 272, 276
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 158
MalI GATC 2 cut(s) 49, 105
MboI GATC 2 cut(s) 47, 103
MboII GAAGA 2 cut(s) 57, 158
MluCI AATT 2 cut(s) 31, 139
MnlI CCTC 3 cut(s) 141, 163, 174
MseI TTAA 2 cut(s) 96, 289
MslI CAYNNNNRTG 1 cut(s) 65
MspI CCGG 2 cut(s) 253, 261
Mva1269I GAATGC 1 cut(s) 198
NdeII GATC 2 cut(s) 47, 103
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 3 cut(s) 64, 70, 104
NlaIV GGNNCC 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 158
NspV TTCGAA 1 cut(s) 75
PagI TCATGA 1 cut(s) 100
PctI GAATGC 1 cut(s) 198
PkrI GCNGC 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 65
SaqAI TTAA 2 cut(s) 96, 289
SatI GCNGC 1 cut(s) 209
Sau3AI GATC 2 cut(s) 47, 103
SetI ASST 5 cut(s) 114, 229, 273, 277, 281
SfaNI GCATC 1 cut(s) 117
SfuI TTCGAA 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 65
Sse9I AATT 2 cut(s) 31, 139
SsiI CCGC 1 cut(s) 208
SspMI CTAG 3 cut(s) 42, 272, 276
TaaI ACNGT 1 cut(s) 191
TaiI ACGT 1 cut(s) 114
TaqI TCGA 3 cut(s) 16, 75, 125
TasI AATT 2 cut(s) 31, 139
TauI GCSGC 1 cut(s) 211
Tru1I TTAA 2 cut(s) 96, 289
Tru9I TTAA 2 cut(s) 96, 289
TseFI GTSAC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 183
XapI RAATTY 2 cut(s) 31, 139
XspI CTAG 3 cut(s) 42, 272, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.