Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Reverse (-)

8363829 .. 8367276

Gene Structure 3448 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG057200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGATGGGTCTTGTGCCTGTGCTTGGAAAGCTGAGGAATAACTTAATTGCGGTTAATAGAAGATCAATAGCAGACAACGTTATTAAAGCCTCAAACAATCTTAATTCTGGGCACCAAGAACACAAGCCCTGGTTGCACCCTGACCCTTGCATTCGAAGCCTCCTGCGGAAATTCTCATTACCCACCTGTAAAGAATTGTGGACTGACTGGACTCCCAACAAACAATTCACCTATGGTCAATTGTGGACTCAGCTGCTGTCTCCTCTTGTAACGTTTGACCCACCCGAATCAACCCATCGGAGACTGATGGATGATGATCCCCAGATTACAGCTGCTGCTGCTTTTGCGGTGGCAGAATTCAACAAGCAAAAGAATGCCCAGCTGCGATTCATTAGAGCAGTAAAGGGATTTCGCAGTTGTTTTTATTACTTTCTAACTATGGAGGCAGTCGATGCTCATGCGGTTAGAACTTACCAAGCAGTAGTCAAAGAAAAGCGCATGCATCCCTATGAACCCTTTAAGGTCCTATTATTTGGTCTTGTTGCTGATAACGGCAATGGGAATTTGTTAAATCTAATTGATAGCAGAAGGAATGGACCGTATGGTGAATGTCTATATGATGATCGAGGTTTTACAACCACAGTTGGGGATTACAAGTTAGAGGCTCCAATGAAAGCAAAAAGATGTTCTCTTGAGGGTGAGATACTAAGCTCCTTGCACATGTTGCAAGTCCAAAAAGGATCTGGGTGTTGTCGCCGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

254

Amino Acids

28.91

Weight (kDa)

9.33

Isoelectric Point (pI)

48.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	105 - 168	1.4e-10	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	111
AciI	CCGC	4 cut(s)	50, 166, 347, 461
AclI	AACGTT	2 cut(s)	78, 272
AclWI	GGATC	2 cut(s)	311, 748
AcsI	RAATTY	3 cut(s)	170, 356, 562
AfiI	CCNNNNNNNGG	2 cut(s)	23, 645
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	128
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	5 cut(s)	31, 253, 332, 382, 711
AluI	AGCT	5 cut(s)	31, 253, 332, 382, 711
Alw26I	GTCTC	2 cut(s)	264, 295
AlwI	GGATC	2 cut(s)	311, 748
AlwNI	CAGNNNCTG	2 cut(s)	256, 335
ApeKI	GCWGC	5 cut(s)	253, 332, 335, 338, 382
ApoI	RAATTY	3 cut(s)	170, 356, 562
AspLEI	GCGC	1 cut(s)	498
AspS9I	GGNCC	2 cut(s)	523, 596
AsuHPI	GGTGA	3 cut(s)	220, 617, 710
AsuII	TTCGAA	1 cut(s)	154
AvaII	GGWCC	2 cut(s)	523, 596
BaeGI	GKGCMC	1 cut(s)	114
BanI	GGYRCC	1 cut(s)	111
BbvCI	CCTCAGC	1 cut(s)	32
BbvI	GCAGC	5 cut(s)	240, 319, 322, 325, 369
BccI	CCATC	2 cut(s)	301, 303
BceAI	ACGGC	1 cut(s)	568
BcgI	CGANNNNNNTGC	2 cut(s)	440, 474
BciT130I	CCWGG	1 cut(s)	130
BcoDI	GTCTC	2 cut(s)	264, 295
BisI	GCNGC	5 cut(s)	254, 333, 336, 339, 383
BlsI	GCNGC	5 cut(s)	255, 334, 337, 340, 384
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	2 cut(s)	523, 596
BmgT120I	GGNCC	2 cut(s)	523, 596
BmiI	GGNNCC	2 cut(s)	113, 666
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	442, 511
Bpu10I	CCTNAGC	1 cut(s)	32
Bpu14I	TTCGAA	1 cut(s)	154
BpuEI	CTTGAG	1 cut(s)	713
BsaBI	GATNNNNATC	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 645
Bse1I	ACTGG	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	562
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	128
BseGI	GGATG	2 cut(s)	316, 502
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	23, 645
BseMI	GCAATG	1 cut(s)	562
BseMII	CTCAG	2 cut(s)	23, 263
BseNI	ACTGG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	252
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	5 cut(s)	240, 319, 322, 325, 369
BseYI	CCCAGC	1 cut(s)	378
BshNI	GGYRCC	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	23, 645
BsmAI	GTCTC	2 cut(s)	264, 295
BsmI	GAATGC	2 cut(s)	150, 379
Bsp119I	TTCGAA	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	4 cut(s)	62, 316, 622, 740
BspACI	CCGC	4 cut(s)	50, 166, 347, 461
BspCNI	CTCAG	2 cut(s)	24, 262
BspLI	GGNNCC	2 cut(s)	113, 666
BspPI	GGATC	2 cut(s)	311, 748
BspT104I	TTCGAA	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	128
BssMI	GATC	4 cut(s)	62, 316, 622, 740
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	600, 643
BstAPI	GCANNNNNTGC	2 cut(s)	452, 724
BstBI	TTCGAA	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	500
BstDEI	CTNAG	3 cut(s)	32, 249, 707
BstF5I	GGATG	2 cut(s)	316, 502
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	4 cut(s)	65, 319, 625, 743
BstMAI	GTCTC	2 cut(s)	264, 295
BstMBI	GATC	4 cut(s)	62, 316, 622, 740
BstMWI	GCNNNNNNNGC	7 cut(s)	28, 133, 156, 338, 344, 452, 724
BstNI	CCWGG	1 cut(s)	130
BstNSI	RCATGY	2 cut(s)	502, 724
BstSCI	CCNGG	1 cut(s)	128
BstSLI	GKGCMC	1 cut(s)	114
BstV1I	GCAGC	5 cut(s)	240, 319, 322, 325, 369
BstX2I	RGATCY	1 cut(s)	740
BstYI	RGATCY	1 cut(s)	740
BtsCI	GGATG	2 cut(s)	316, 502
Cac8I	GCNNGC	1 cut(s)	500
CaiI	CAGNNNCTG	2 cut(s)	256, 335
CfoI	GCGC	1 cut(s)	498
Cfr13I	GGNCC	2 cut(s)	523, 596
CviAII	CATG	3 cut(s)	458, 499, 721
CviJI	RGCY	9 cut(s)	31, 89, 127, 159, 253, 332, 382, 665, 711
CviKI_1	RGCY	9 cut(s)	31, 89, 127, 159, 253, 332, 382, 665, 711
DdeI	CTNAG	3 cut(s)	32, 249, 707
DpnI	GATC	4 cut(s)	64, 318, 624, 742
DpnII	GATC	4 cut(s)	62, 316, 622, 740
Eco47I	GGWCC	2 cut(s)	523, 596
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	128
EcoT22I	ATGCAT	1 cut(s)	504
FaeI	CATG	3 cut(s)	461, 502, 724
FaiI	YATR	9 cut(s)	234, 440, 459, 500, 510, 603, 616, 618, 722
FatI	CATG	3 cut(s)	457, 498, 720
Fnu4HI	GCNGC	5 cut(s)	254, 333, 336, 339, 383
FokI	GGATG	2 cut(s)	323, 489
Fsp4HI	GCNGC	5 cut(s)	254, 333, 336, 339, 383
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	5 cut(s)	254, 333, 336, 339, 383
GsaI	CCCAGC	1 cut(s)	382
HhaI	GCGC	1 cut(s)	498
Hin1II	CATG	3 cut(s)	461, 502, 724
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HinfI	GANTC	4 cut(s)	211, 247, 287, 387
HphI	GGTGA	3 cut(s)	220, 617, 710
Hpy166II	GTNNAC	2 cut(s)	201, 246
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	1 cut(s)	692
Hpy8I	GTNNAC	2 cut(s)	201, 246
HpyAV	CCTTC	1 cut(s)	582
HpyCH4III	ACNGT	2 cut(s)	600, 643
HpyCH4IV	ACGT	2 cut(s)	78, 272
HpyCH4V	TGCA	5 cut(s)	136, 150, 502, 718, 727
HpyF10VI	GCNNNNNNNGC	7 cut(s)	28, 133, 156, 338, 344, 452, 724
HpyF3I	CTNAG	3 cut(s)	32, 249, 707
HpySE526I	ACGT	2 cut(s)	78, 272
Hsp92II	CATG	3 cut(s)	461, 502, 724
HspAI	GCGC	1 cut(s)	496
Kzo9I	GATC	4 cut(s)	62, 316, 622, 740
LmnI	GCTCC	2 cut(s)	670, 716
Lsp1109I	GCAGC	5 cut(s)	240, 319, 322, 325, 369
LweI	GCATC	2 cut(s)	442, 511
MaeII	ACGT	2 cut(s)	78, 272
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	4 cut(s)	64, 318, 624, 742
MboI	GATC	4 cut(s)	62, 316, 622, 740
MboII	GAAGA	1 cut(s)	72
MfeI	CAATTG	1 cut(s)	239
MflI	RGATCY	1 cut(s)	740
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	9 cut(s)	45, 103, 170, 194, 224, 239, 356, 562, 576
MlyI	GAGTC	2 cut(s)	205, 241
MnlI	CCTC	8 cut(s)	27, 100, 170, 273, 436, 620, 655, 688
Mph1103I	ATGCAT	1 cut(s)	504
MseI	TTAA	6 cut(s)	44, 54, 84, 102, 519, 569
MslI	CAYNNNNRTG	1 cut(s)	507
MspA1I	CMGCKG	3 cut(s)	253, 332, 382
MspR9I	CCNGG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	239
Mva1269I	GAATGC	2 cut(s)	150, 379
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	7 cut(s)	28, 133, 156, 338, 344, 452, 724
NdeII	GATC	4 cut(s)	62, 316, 622, 740
NlaIII	CATG	3 cut(s)	461, 502, 724
NlaIV	GGNNCC	2 cut(s)	113, 666
NsiI	ATGCAT	1 cut(s)	504
NspI	RCATGY	2 cut(s)	502, 724
NspV	TTCGAA	1 cut(s)	154
PaeI	GCATGC	1 cut(s)	502
PciI	ACATGT	1 cut(s)	720
PctI	GAATGC	2 cut(s)	150, 379
PfeI	GAWTC	2 cut(s)	287, 387
PkrI	GCNGC	5 cut(s)	255, 334, 337, 340, 384
PleI	GAGTC	2 cut(s)	205, 241
PpsI	GAGTC	2 cut(s)	205, 241
PpuMI	RGGWCCY	1 cut(s)	523
PscI	ACATGT	1 cut(s)	720
Psp1406I	AACGTT	2 cut(s)	78, 272
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	2 cut(s)	113, 666
PspPI	GGNCC	2 cut(s)	523, 596
PspPPI	RGGWCCY	1 cut(s)	523
PstNI	CAGNNNCTG	2 cut(s)	256, 335
PsuI	RGATCY	1 cut(s)	740
PvuII	CAGCTG	3 cut(s)	253, 332, 382
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	6 cut(s)	44, 54, 84, 102, 519, 569
SatI	GCNGC	5 cut(s)	254, 333, 336, 339, 383
Sau3AI	GATC	4 cut(s)	62, 316, 622, 740
Sau96I	GGNCC	2 cut(s)	523, 596
SchI	GAGTC	2 cut(s)	205, 241
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	2 cut(s)	442, 511
SfuI	TTCGAA	1 cut(s)	154
SinI	GGWCC	2 cut(s)	523, 596
SmiMI	CAYNNNNRTG	1 cut(s)	507
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
SphI	GCATGC	1 cut(s)	502
Sse9I	AATT	9 cut(s)	45, 103, 170, 194, 224, 239, 356, 562, 576
SsiI	CCGC	4 cut(s)	50, 166, 347, 461
StyD4I	CCNGG	1 cut(s)	128
TaaI	ACNGT	2 cut(s)	600, 643
TaiI	ACGT	2 cut(s)	81, 275
TaqI	TCGA	3 cut(s)	154, 450, 625
TasI	AATT	9 cut(s)	45, 103, 170, 194, 224, 239, 356, 562, 576
TfiI	GAWTC	2 cut(s)	287, 387
Tru1I	TTAA	6 cut(s)	44, 54, 84, 102, 519, 569
Tru9I	TTAA	6 cut(s)	44, 54, 84, 102, 519, 569
TseI	GCWGC	5 cut(s)	253, 332, 335, 338, 382
TspDTI	ATGAA	3 cut(s)	379, 525, 686
VpaK11BI	GGWCC	2 cut(s)	523, 596
XapI	RAATTY	3 cut(s)	170, 356, 562
XceI	RCATGY	2 cut(s)	502, 724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	740
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.