Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031119.1

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1075

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031119.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 521 bp

atcgcattgaacttttacgtgaagctggtccttggcggaggcgtgctcgtgaacgttttcgtgttccgccacatcgtcaacctacggataatcccaacgttatggcttatgcccatttggccgtggaagagttcaacaaacaaaagaatgcacaacttcaatttgtgagagcggtgaaggcatattgtcaggagtacgatgatacctggggagataagtactattacctaacgttggaggcagttgatgctcaagttgttaaaacataccaagcagtagttcatgactctactgagccatcgctccacatttttggtcttgttactgataatggtttgttgcaactaactgataaccatgttcgtccttcactttattgcacacttgacgaccgagatgttcgacgcaagggaagaggatattctgatgaaacagagatagaggtcacgctgcagacaaggggaggatattttctccaggatgagatacttggctcgttgcacggacttccctcccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

172

Amino Acids

19.97

Weight (kDa)

6.08

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	172
AciI	CCGC	3 cut(s)	36, 67, 172
AclI	AACGTT	3 cut(s)	54, 98, 232
AcoI	YGGCCR	1 cut(s)	119
AfaI	GTAC	2 cut(s)	196, 220
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	10, 135, 160
AjnI	CCWGG	2 cut(s)	205, 476
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
Alw21I	GWGCWC	1 cut(s)	48
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	450
Asp700I	GAANNNNTTC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	1 cut(s)	306
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	2 cut(s)	207, 478
BfmI	CTRYAG	1 cut(s)	451
BglI	GCCNNNNNGGC	1 cut(s)	118
BisI	GCNGC	1 cut(s)	451
BlsI	GCNGC	1 cut(s)	452
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	2 cut(s)	207, 478
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	207, 478
BmsI	GCATC	1 cut(s)	237
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
BpmI	CTGGAG	1 cut(s)	460
BpuEI	CTTGAG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	19
BsaJI	CCNNGG	3 cut(s)	31, 122, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	207, 478
BseDI	CCNNGG	3 cut(s)	31, 122, 206
BseGI	GGATG	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	437
Bsh1285I	CGRYCG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	48
BspACI	CCGC	3 cut(s)	36, 67, 172
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	1 cut(s)	285
BspHI	TCATGA	1 cut(s)	282
BspMAI	CTGCAG	1 cut(s)	455
BsrBI	CCGCTC	1 cut(s)	172
BssECI	CCNNGG	3 cut(s)	31, 122, 206
BssSI	CACGAG	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	207, 478
Bst6I	CTCTTC	2 cut(s)	122, 408
BstAPI	GCANNNNNTGC	1 cut(s)	247
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	293
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	486
BstMCI	CGRYCG	1 cut(s)	393
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 178, 247
BstNI	CCWGG	2 cut(s)	207, 478
BstSCI	CCNGG	2 cut(s)	205, 476
BstSFI	CTRYAG	1 cut(s)	451
BstV1I	GCAGC	1 cut(s)	437
BstXI	CCANNNNNNTGG	2 cut(s)	102, 313
BsuRI	GGCC	1 cut(s)	121
BtgI	CCRYGG	1 cut(s)	122
BtgZI	GCGATG	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	44
CciI	TCATGA	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	2 cut(s)	195, 219
CviAII	CATG	2 cut(s)	283, 358
CviJI	RGCY	5 cut(s)	25, 106, 121, 297, 494
CviKI_1	RGCY	5 cut(s)	25, 106, 121, 297, 494
CviQI	GTAC	2 cut(s)	195, 219
DdeI	CTNAG	1 cut(s)	293
EaeI	YGGCCR	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	122, 408
EarI	CTCTTC	2 cut(s)	122, 408
EciI	GGCGGA	2 cut(s)	51, 56
Eco130I	CCWWGG	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	205, 476
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	2 cut(s)	286, 361
FaiI	YATR	6 cut(s)	103, 110, 183, 267, 284, 359
FatI	CATG	2 cut(s)	282, 357
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	1 cut(s)	493
Fsp4HI	GCNGC	1 cut(s)	451
GluI	GCNGC	1 cut(s)	451
GsuI	CTGGAG	1 cut(s)	460
HaeIII	GGCC	1 cut(s)	121
HgaI	GACGC	1 cut(s)	413
Hin1II	CATG	2 cut(s)	286, 361
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	1 cut(s)	286
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	2 cut(s)	52, 79
Hpy188I	TCNGA	1 cut(s)	426
Hpy188III	TCNNGA	3 cut(s)	49, 190, 283
Hpy8I	GTNNAC	2 cut(s)	52, 79
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	2 cut(s)	171, 377
HpyCH4IV	ACGT	4 cut(s)	18, 54, 98, 232
HpyCH4V	TGCA	5 cut(s)	151, 342, 380, 453, 501
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 178, 247
HpyF3I	CTNAG	1 cut(s)	293
HpySE526I	ACGT	4 cut(s)	18, 54, 98, 232
Hsp92II	CATG	2 cut(s)	286, 361
LmnI	GCTCC	1 cut(s)	308
LpnPI	CCDG	6 cut(s)	11, 175, 192, 219, 463, 490
Lsp1109I	GCAGC	1 cut(s)	437
LweI	GCATC	1 cut(s)	237
MaeII	ACGT	4 cut(s)	18, 54, 98, 232
MaeIII	GTNAC	2 cut(s)	321, 444
MbiI	CCGCTC	1 cut(s)	172
MboII	GAAGA	2 cut(s)	139, 425
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	280
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	5 cut(s)	32, 231, 409, 435, 457
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	1 cut(s)	260
MspR9I	CCNGG	2 cut(s)	207, 478
Mva1269I	GAATGC	1 cut(s)	153
MvaI	CCWGG	2 cut(s)	207, 478
MwoI	GCNNNNNNNGC	3 cut(s)	118, 178, 247
NlaIII	CATG	2 cut(s)	286, 361
NmuCI	GTSAC	1 cut(s)	444
PagI	TCATGA	1 cut(s)	282
PctI	GAATGC	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	56
PfoI	TCCNGGA	1 cut(s)	476
PkrI	GCNGC	1 cut(s)	452
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
Ppu21I	YACGTR	1 cut(s)	19
Psp1406I	AACGTT	3 cut(s)	54, 98, 232
Psp6I	CCWGG	2 cut(s)	205, 476
PspGI	CCWGG	2 cut(s)	205, 476
PspPI	GGNCC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	455
RsaI	GTAC	2 cut(s)	196, 220
RsaNI	GTAC	2 cut(s)	195, 219
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	1 cut(s)	451
Sau96I	GGNCC	1 cut(s)	28
ScaI	AGTACT	1 cut(s)	220
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	2 cut(s)	207, 478
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	9 cut(s)	21, 27, 57, 84, 101, 208, 230, 235, 446
SfaNI	GCATC	1 cut(s)	237
SfcI	CTRYAG	1 cut(s)	451
SinI	GGWCC	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	3 cut(s)	36, 67, 172
StyD4I	CCNGG	2 cut(s)	205, 476
StyI	CCWWGG	1 cut(s)	31
TaiI	ACGT	4 cut(s)	21, 57, 101, 235
TaqI	TCGA	1 cut(s)	402
TaqII	GACCGA	1 cut(s)	407
TasI	AATT	1 cut(s)	160
TatI	WGTACW	1 cut(s)	218
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	444
TseI	GCWGC	1 cut(s)	450
Tsp45I	GTSAC	1 cut(s)	444
TspDTI	ATGAA	2 cut(s)	271, 443
TspGWI	ACGGA	2 cut(s)	100, 518
VpaK11BI	GGWCC	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	56
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.