Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Forward (+)

50359107 .. 50360070

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG253700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGATGGGTCTTGGGCCTGTGCTTGGAAAGCTGAGGAATAACTTAATTGCGGTTAACAGAATTAGATCAATGGCAGACAAGGTTAGTGGAATTGGAGCCTCAAACAATCATTCGATGCCCCCTGATTTTGGAATTAGGCACCAAGAACACAAACCCTTGTTCCCGCCTTTCATTCGAAGCCTCATGCAGAAAGGATCATTAACAAACGCAGAATTAACTCGCATTCAAACCTTCCTGGGGGAATTAAACTATCAAGGCTCGTGGACTCCCGACGAACAATTAACCTACCAAGAATTGTCGAATCGGCTGGTGCTGCTTAATGTAACGTTTAACGCACGCGAATCAATCCTTTGGAGACTGAGGGATGATGATCCCAAGATTACAGCTACTGCTGGTTTTGCGGTGGCAGAATTCAACAAGCAGAAGGTTTTTTTCAACTCAATCAATTTCATTCTAGTTTCTCTGTTCTGTTTTATCATCAGTAATTTAATCAGTGCACTAATGCTTGCTACTTACATGTATCACATGCATGGTGGTTATCTCAGTGAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.83

Weight (kDa)

8.97

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	138
AccII	CGCG	1 cut(s)	339
AciI	CCGC	3 cut(s)	50, 164, 401
AclI	AACGTT	1 cut(s)	326
AclWI	GGATC	2 cut(s)	202, 365
AcsI	RAATTY	1 cut(s)	410
AfiI	CCNNNNNNNGG	3 cut(s)	23, 128, 237
AflIII	ACRYGT	1 cut(s)	516
AgsI	TTSAA	3 cut(s)	227, 415, 436
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	2 cut(s)	31, 386
AluI	AGCT	2 cut(s)	31, 386
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	1 cut(s)	349
Alw44I	GTGCAC	1 cut(s)	495
AlwI	GGATC	2 cut(s)	202, 365
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	14
ApaLI	GTGCAC	1 cut(s)	495
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	14
AsuII	TTCGAA	1 cut(s)	175
BaeGI	GKGCMC	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	138
BauI	CACGAG	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	499
BbvCI	CCTCAGC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	300
BciT130I	CCWGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	1 cut(s)	455
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
Bme1390I	CCNGG	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	2 cut(s)	97, 140
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	32
Bpu14I	TTCGAA	1 cut(s)	175
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 128, 237
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	370
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	3 cut(s)	23, 128, 237
BseMII	CTCAG	2 cut(s)	23, 350
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	1 cut(s)	300
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	1 cut(s)	16
BshNI	GGYRCC	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	499
BslI	CCNNNNNNNGG	3 cut(s)	23, 128, 237
BsmAI	GTCTC	1 cut(s)	349
BsmI	GAATGC	2 cut(s)	222, 554
BsnI	GGCC	1 cut(s)	16
Bsp119I	TTCGAA	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp143I	GATC	3 cut(s)	65, 194, 370
BspACI	CCGC	3 cut(s)	50, 164, 401
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	3 cut(s)	24, 351, 555
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	97, 140
BspPI	GGATC	2 cut(s)	202, 365
BspT104I	TTCGAA	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	3 cut(s)	65, 194, 370
BssSI	CACGAG	1 cut(s)	259
Bst2BI	CACGAG	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	236
BstBI	TTCGAA	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	337, 507
BstDEI	CTNAG	3 cut(s)	32, 359, 542
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	1 cut(s)	339
BstKTI	GATC	3 cut(s)	68, 197, 373
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	3 cut(s)	65, 194, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 313, 398
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	2 cut(s)	520, 529
BstSCI	CCNGG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	499
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	370
BtsIMutI	CAGTG	2 cut(s)	499, 550
Cac8I	GCNNGC	2 cut(s)	337, 507
CaiI	CAGNNNCTG	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	14
CspCI	CAANNNNNGTGG	4 cut(s)	67, 102, 242, 277
CviAII	CATG	4 cut(s)	184, 517, 526, 530
CviJI	RGCY	7 cut(s)	16, 31, 98, 180, 258, 307, 386
CviKI_1	RGCY	7 cut(s)	16, 31, 98, 180, 258, 307, 386
DdeI	CTNAG	3 cut(s)	32, 359, 542
DpnI	GATC	3 cut(s)	67, 196, 372
DpnII	GATC	3 cut(s)	65, 194, 370
EcoRI	GAATTC	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	234
EcoT22I	ATGCAT	1 cut(s)	531
FaeI	CATG	4 cut(s)	187, 520, 529, 533
FaiI	YATR	4 cut(s)	185, 518, 527, 531
FatI	CATG	4 cut(s)	183, 516, 525, 529
FauI	CCCGC	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	1 cut(s)	455
GluI	GCNGC	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	16
Hin1II	CATG	4 cut(s)	187, 520, 529, 533
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	3 cut(s)	265, 301, 341
HpaI	GTTAAC	1 cut(s)	55
Hpy166II	GTNNAC	3 cut(s)	55, 264, 497
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	3 cut(s)	55, 264, 497
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	241, 418
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	3 cut(s)	187, 497, 529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 313, 398
HpyF3I	CTNAG	3 cut(s)	32, 359, 542
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	4 cut(s)	187, 520, 529, 533
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	65, 194, 370
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	6 cut(s)	30, 135, 221, 248, 293, 378
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	1 cut(s)	455
MaeII	ACGT	1 cut(s)	326
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	3 cut(s)	67, 196, 372
MboI	GATC	3 cut(s)	65, 194, 370
MhlI	GDGCHC	1 cut(s)	499
MlyI	GAGTC	1 cut(s)	259
MnlI	CCTC	4 cut(s)	27, 109, 191, 354
Mph1103I	ATGCAT	1 cut(s)	531
MseI	TTAA	9 cut(s)	44, 54, 200, 215, 245, 281, 318, 330, 488
MslI	CAYNNNNRTG	1 cut(s)	528
MspR9I	CCNGG	1 cut(s)	236
Mva1269I	GAATGC	2 cut(s)	222, 554
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	3 cut(s)	28, 313, 398
NdeII	GATC	3 cut(s)	65, 194, 370
NlaIII	CATG	4 cut(s)	187, 520, 529, 533
NlaIV	GGNNCC	2 cut(s)	97, 140
NsiI	ATGCAT	1 cut(s)	531
NspI	RCATGY	2 cut(s)	520, 529
NspV	TTCGAA	1 cut(s)	175
PciI	ACATGT	1 cut(s)	516
PctI	GAATGC	2 cut(s)	222, 554
PfeI	GAWTC	2 cut(s)	301, 341
PkrI	GCNGC	1 cut(s)	315
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PscI	ACATGT	1 cut(s)	516
Psp1406I	AACGTT	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	97, 140
PspPI	GGNCC	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	389
RseI	CAYNNNNRTG	1 cut(s)	528
SaqAI	TTAA	9 cut(s)	44, 54, 200, 215, 245, 281, 318, 330, 488
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	3 cut(s)	65, 194, 370
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	499
SetI	ASST	7 cut(s)	33, 84, 233, 287, 329, 388, 429
SfaNI	GCATC	1 cut(s)	105
SfuI	TTCGAA	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	528
SsiI	CCGC	3 cut(s)	50, 164, 401
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	1 cut(s)	234
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	3 cut(s)	113, 175, 299
TfiI	GAWTC	2 cut(s)	301, 341
Tru1I	TTAA	9 cut(s)	44, 54, 200, 215, 245, 281, 318, 330, 488
Tru9I	TTAA	9 cut(s)	44, 54, 200, 215, 245, 281, 318, 330, 488
TscAI	CASTG	2 cut(s)	499, 550
TseI	GCWGC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	160, 439
TspRI	CASTG	2 cut(s)	499, 550
VneI	GTGCAC	1 cut(s)	495
XapI	RAATTY	1 cut(s)	410
XceI	RCATGY	2 cut(s)	520, 529
XspI	CTAG	1 cut(s)	455
Zsp2I	ATGCAT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.