Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Reverse (-)

76723709 .. 76730987

Gene Structure 7279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG550900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAAACGACTATTCGATCTATGCTTGGAAATGTTGTGACCAGAAGATCAGTAGCAAACATGGTCACGCCTTTCGAAATCAGAACCCTAAATCTTAATCATGATCAGGACGTGTTTCCAGTTTCGATGCTTCATCTAAATTTGGGCTATTCCTCTCGTCAACCTCTTCATTTTCTTTCTGTATTACACCGTCCCTGCATTCAAAGGCGGCCTAAGAAAGTGGAACCTGACCACCAAGTATGTGAAACTGGCCGGAAAGCCGGAACTGACCTAGCTAGCTCAAAGCAATGCCAACTGCAATTTGTAAGAGTGGTAAAGGCATATAACCAGGTGTTTGGTGGTTGGACGGTTCGTTTGCTAACCTTGGAGGCAATTGATCCTGAGAATGTGATCCAGATTTACCAAGCAATAGTTAAGGAGCATTGCACTGTCAATCCTCCACTGCAGCTCGAATTGTTTGGTCTTGTTGCTGATAATGGCAAAGGGAGTTTGTTGAAACTTATTGACAACAGGCGTTCAGGCCGAGGAGGACCAGTTGATAATCGGCCTAAGTCATCTAGTGACGAAACACTATCGCACATTGGGAGGGTCTACAACTGGAAGCTACCCTATAAAGAGAAATCCCCAATGCTGGTCTCCACCTCGAATATCACGCCGGCGATCACTCAGACTCTCTCTCCAATCCCGCCGGCGATCACTCAAACTCAAATTGGGCAACTATTCGGTGAGTATGACTCTTTTTTCTTGTCGTCTTCAAGGGGCCCAAATGTATTTGATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

29.14

Weight (kDa)

9.34

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	591
AciI	CCGC	2 cut(s)	208, 686
AclWI	GGATC	2 cut(s)	371, 385
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	631
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	3 cut(s)	203, 496, 756
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	4 cut(s)	275, 279, 448, 604
AluI	AGCT	4 cut(s)	275, 279, 448, 604
Alw26I	GTCTC	1 cut(s)	640
AlwI	GGATC	2 cut(s)	371, 385
AoxI	GGCC	5 cut(s)	209, 250, 520, 545, 760
ApaI	GGGCCC	1 cut(s)	764
ApeKI	GCWGC	1 cut(s)	445
ApoI	RAATTY	1 cut(s)	139
ArsI	GACNNNNNNTTYG	2 cut(s)	337, 369
AspS9I	GGNCC	3 cut(s)	530, 760, 761
AsuHPI	GGTGA	1 cut(s)	737
AsuII	TTCGAA	1 cut(s)	75
AsuNHI	GCTAGC	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	530
BaeGI	GKGCMC	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	764
BbsI	GAAGAC	1 cut(s)	744
BbvI	GCAGC	1 cut(s)	457
BciT130I	CCWGG	1 cut(s)	329
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	640
BfaI	CTAG	3 cut(s)	272, 276, 558
BfmI	CTRYAG	1 cut(s)	443
BisI	GCNGC	2 cut(s)	209, 446
BlsI	GCNGC	2 cut(s)	210, 447
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	530
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	3 cut(s)	530, 760, 761
BmiI	GGNNCC	3 cut(s)	225, 761, 762
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	1 cut(s)	117
BmtI	GCTAGC	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	744
BplI	GAGNNNNNCTC	2 cut(s)	719, 751
Bpu14I	TTCGAA	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	640
BsaJI	CCNNGG	2 cut(s)	363, 523
BsaXI	ACNNNNNCTCC	4 cut(s)	519, 549, 661, 691
Bsc4I	CCNNNNNNNGG	1 cut(s)	631
Bse118I	RCCGGY	2 cut(s)	655, 688
Bse1I	ACTGG	4 cut(s)	119, 253, 533, 602
Bse3DI	GCAATG	2 cut(s)	293, 421
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	363, 523
BseLI	CCNNNNNNNGG	1 cut(s)	631
BseMI	GCAATG	2 cut(s)	293, 421
BseMII	CTCAG	2 cut(s)	372, 680
BseNI	ACTGG	4 cut(s)	119, 253, 533, 602
BseRI	GAGGAG	1 cut(s)	540
BseSI	GKGCMC	1 cut(s)	764
BseXI	GCAGC	1 cut(s)	457
BshFI	GGCC	5 cut(s)	211, 252, 522, 547, 762
BsiSI	CCGG	4 cut(s)	253, 261, 656, 689
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	631
BsmAI	GTCTC	1 cut(s)	640
BsmFI	GGGAC	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	5 cut(s)	211, 252, 522, 547, 762
Bso31I	GGTCTC	1 cut(s)	640
Bsp119I	TTCGAA	1 cut(s)	75
Bsp120I	GGGCCC	1 cut(s)	760
Bsp1286I	GDGCHC	1 cut(s)	764
Bsp143I	GATC	7 cut(s)	17, 47, 103, 376, 390, 660, 693
BspACI	CCGC	2 cut(s)	208, 686
BspANI	GGCC	5 cut(s)	211, 252, 522, 547, 762
BspCNI	CTCAG	2 cut(s)	373, 679
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	3 cut(s)	225, 761, 762
BspMAI	CTGCAG	1 cut(s)	447
BspOI	GCTAGC	1 cut(s)	279
BspPI	GGATC	2 cut(s)	371, 385
BspT104I	TTCGAA	1 cut(s)	75
BspTNI	GGTCTC	1 cut(s)	640
BsrDI	GCAATG	2 cut(s)	293, 421
BsrFI	RCCGGY	2 cut(s)	655, 688
BsrI	ACTGG	4 cut(s)	119, 253, 533, 602
BssAI	RCCGGY	2 cut(s)	655, 688
BssECI	CCNNGG	2 cut(s)	363, 523
BssMI	GATC	7 cut(s)	17, 47, 103, 376, 390, 660, 693
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	3 cut(s)	191, 349, 430
Bst6I	CTCTTC	1 cut(s)	171
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	3 cut(s)	277, 657, 690
BstDEI	CTNAG	4 cut(s)	213, 381, 549, 666
BstKTI	GATC	7 cut(s)	20, 50, 106, 379, 393, 663, 696
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	7 cut(s)	17, 47, 103, 376, 390, 660, 693
BstNI	CCWGG	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	327
BstSFI	CTRYAG	1 cut(s)	443
BstSLI	GKGCMC	1 cut(s)	764
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	1 cut(s)	744
BstXI	CCANNNNNNTGG	1 cut(s)	335
BsuRI	GGCC	5 cut(s)	211, 252, 522, 547, 762
BtrI	CACGTC	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	440
BtsIMutI	CAGTG	2 cut(s)	426, 440
Cac8I	GCNNGC	3 cut(s)	277, 657, 690
CciI	TCATGA	1 cut(s)	100
Cfr10I	RCCGGY	2 cut(s)	655, 688
Cfr13I	GGNCC	3 cut(s)	530, 760, 761
CsiI	ACCWGGT	1 cut(s)	327
CviAII	CATG	2 cut(s)	61, 101
DdeI	CTNAG	4 cut(s)	213, 381, 549, 666
DpnI	GATC	7 cut(s)	19, 49, 105, 378, 392, 662, 695
DpnII	GATC	7 cut(s)	17, 47, 103, 376, 390, 660, 693
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	764
Eco31I	GGTCTC	1 cut(s)	640
Eco47I	GGWCC	1 cut(s)	530
EcoO109I	RGGNCCY	1 cut(s)	760
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	764
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	2 cut(s)	64, 104
FaiI	YATR	8 cut(s)	23, 62, 102, 241, 322, 324, 612, 732
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	2 cut(s)	60, 100
FauI	CCCGC	1 cut(s)	693
FbaI	TGATCA	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	2 cut(s)	209, 446
FriOI	GRGCYC	1 cut(s)	764
Fsp4HI	GCNGC	2 cut(s)	209, 446
FspBI	CTAG	3 cut(s)	272, 276, 558
GluI	GCNGC	2 cut(s)	209, 446
HaeIII	GGCC	5 cut(s)	211, 252, 522, 547, 762
HapII	CCGG	4 cut(s)	253, 261, 656, 689
Hin1II	CATG	2 cut(s)	64, 104
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
HinfI	GANTC	2 cut(s)	670, 734
HpaII	CCGG	4 cut(s)	253, 261, 656, 689
HphI	GGTGA	1 cut(s)	737
Hpy166II	GTNNAC	2 cut(s)	161, 592
Hpy188I	TCNGA	2 cut(s)	83, 669
Hpy188III	TCNNGA	4 cut(s)	101, 107, 380, 394
Hpy8I	GTNNAC	2 cut(s)	161, 592
HpyCH4III	ACNGT	3 cut(s)	191, 349, 430
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	4 cut(s)	198, 298, 426, 445
HpyF3I	CTNAG	4 cut(s)	213, 381, 549, 666
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	64, 104
KroI	GCCGGC	2 cut(s)	655, 688
KroNI	GCCGGC	2 cut(s)	657, 690
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	7 cut(s)	17, 47, 103, 376, 390, 660, 693
LmnI	GCTCC	1 cut(s)	418
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	1 cut(s)	117
MabI	ACCWGGT	1 cut(s)	327
MaeI	CTAG	3 cut(s)	272, 276, 558
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	3 cut(s)	37, 64, 560
MalI	GATC	7 cut(s)	19, 49, 105, 378, 392, 662, 695
MboI	GATC	7 cut(s)	17, 47, 103, 376, 390, 660, 693
MboII	GAAGA	3 cut(s)	57, 158, 744
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	1 cut(s)	764
MluCI	AATT	5 cut(s)	139, 299, 372, 452, 708
MlyI	GAGTC	2 cut(s)	664, 728
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	8 cut(s)	163, 174, 361, 447, 518, 521, 579, 652
MreI	CGCCGGCG	2 cut(s)	655, 688
MroNI	GCCGGC	2 cut(s)	655, 688
MseI	TTAA	2 cut(s)	96, 414
MspI	CCGG	4 cut(s)	253, 261, 656, 689
MspR9I	CCNGG	1 cut(s)	329
MunI	CAATTG	1 cut(s)	372
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	329
NaeI	GCCGGC	2 cut(s)	657, 690
NdeII	GATC	7 cut(s)	17, 47, 103, 376, 390, 660, 693
NgoMIV	GCCGGC	2 cut(s)	655, 688
NheI	GCTAGC	1 cut(s)	275
NlaIII	CATG	2 cut(s)	64, 104
NlaIV	GGNNCC	3 cut(s)	225, 761, 762
NmeAIII	GCCGAG	1 cut(s)	548
NmuCI	GTSAC	3 cut(s)	37, 64, 560
NspV	TTCGAA	1 cut(s)	75
PagI	TCATGA	1 cut(s)	100
PctI	GAATGC	1 cut(s)	198
PdiI	GCCGGC	2 cut(s)	657, 690
PkrI	GCNGC	2 cut(s)	210, 447
PleI	GAGTC	2 cut(s)	664, 728
PpsI	GAGTC	2 cut(s)	664, 728
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	3 cut(s)	225, 761, 762
PspOMI	GGGCCC	1 cut(s)	760
PspPI	GGNCC	3 cut(s)	530, 760, 761
PstI	CTGCAG	1 cut(s)	447
SaqAI	TTAA	2 cut(s)	96, 414
SatI	GCNGC	2 cut(s)	209, 446
Sau3AI	GATC	7 cut(s)	17, 47, 103, 376, 390, 660, 693
Sau96I	GGNCC	3 cut(s)	530, 760, 761
SchI	GAGTC	2 cut(s)	664, 728
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	764
SexAI	ACCWGGT	1 cut(s)	327
SfaNI	GCATC	1 cut(s)	117
SfcI	CTRYAG	1 cut(s)	443
SfuI	TTCGAA	1 cut(s)	75
SgrAI	CRCCGGYG	2 cut(s)	655, 688
SinI	GGWCC	1 cut(s)	530
Sse9I	AATT	5 cut(s)	139, 299, 372, 452, 708
SsiI	CCGC	2 cut(s)	208, 686
SspMI	CTAG	3 cut(s)	272, 276, 558
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	3 cut(s)	191, 349, 430
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	5 cut(s)	16, 75, 125, 450, 644
TasI	AATT	5 cut(s)	139, 299, 372, 452, 708
TauI	GCSGC	1 cut(s)	211
Tru1I	TTAA	2 cut(s)	96, 414
Tru9I	TTAA	2 cut(s)	96, 414
TscAI	CASTG	2 cut(s)	433, 447
TseFI	GTSAC	3 cut(s)	37, 64, 560
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	3 cut(s)	37, 64, 560
TspDTI	ATGAA	2 cut(s)	122, 158
TspRI	CASTG	2 cut(s)	433, 447
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	591
XspI	CTAG	3 cut(s)	272, 276, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.