Rh5DG539500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002040
Physical Location & Seq
Reverse (-)
83122062 .. 83122714
653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG539500.1

Sequence Viewer

Length: 312 bp
ATGTTTGTAAGAGTGGTAAAGGCATATAACCAGGTGTTTGGTGGTTGGACGGTTCGTCTGCTAACCTTGGAGGCACTTGATCCTGAGAATGTGATCCAGATTTACCAAGCAATAGTTAAGGAACATTGCACTGGCAATCCTCCAGTGCAGCTCCAGTTGTTTGGTCTTGTTGCTGATAATGGCAATGGGAGCTTGTTGAAACTTATTGACAACAGGCGTCCAGGCCGAGGAGGACCAGTTGATAATCGGCGTATAGTAAATTGTCTGTTCTCCTTTCTCATTATCTCGATCATTGATGATGATATTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.52

Weight (kDa)

7.8

Isoelectric Point (pI)

24.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 74, 88
AcyI GRCGYC 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 1 cut(s) 199
AhdI GACNNNNNGTC 1 cut(s) 54
AjnI CCWGG 2 cut(s) 30, 220
AluBI AGCT 2 cut(s) 151, 192
AluI AGCT 2 cut(s) 151, 192
AlwI GGATC 2 cut(s) 74, 88
AoxI GGCC 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 233
AvaII GGWCC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 160
BciT130I CCWGG 2 cut(s) 32, 222
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme1390I CCNGG 2 cut(s) 32, 222
Bme18I GGWCC 1 cut(s) 233
BmeRI GACNNNNNGTC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 233
BmrFI CCNGG 2 cut(s) 32, 222
BpmI CTGGAG 2 cut(s) 126, 137
BsaHI GRCGYC 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 66, 226
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 4 cut(s) 136, 143, 154, 236
Bse3DI GCAATG 2 cut(s) 124, 190
BseBI CCWGG 2 cut(s) 32, 222
BseDI CCNNGG 2 cut(s) 66, 226
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMI GCAATG 2 cut(s) 124, 190
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 4 cut(s) 136, 143, 154, 236
BseRI GAGGAG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 167
BshFI GGCC 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 227
BsnI GGCC 1 cut(s) 225
Bsp143I GATC 3 cut(s) 79, 93, 288
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 1 cut(s) 76
BspPI GGATC 2 cut(s) 74, 88
BsrDI GCAATG 2 cut(s) 124, 190
BsrI ACTGG 4 cut(s) 136, 143, 154, 236
BssECI CCNNGG 2 cut(s) 66, 226
BssMI GATC 3 cut(s) 79, 93, 288
BssNI GRCGYC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 2 cut(s) 32, 222
Bst4CI ACNGT 1 cut(s) 52
BstACI GRCGYC 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 84
BstKTI GATC 3 cut(s) 82, 96, 291
BstMBI GATC 3 cut(s) 79, 93, 288
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstNI CCWGG 2 cut(s) 32, 222
BstSCI CCNGG 2 cut(s) 30, 220
BstV1I GCAGC 1 cut(s) 160
BstXI CCANNNNNNTGG 2 cut(s) 38, 161
BsuRI GGCC 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 129, 150
Cfr13I GGNCC 1 cut(s) 233
CseI GACGC 1 cut(s) 206
CsiI ACCWGGT 1 cut(s) 30
CviJI RGCY 3 cut(s) 151, 192, 225
CviKI_1 RGCY 3 cut(s) 151, 192, 225
DdeI CTNAG 1 cut(s) 84
DpnI GATC 3 cut(s) 81, 95, 290
DpnII GATC 3 cut(s) 79, 93, 288
DriI GACNNNNNGTC 1 cut(s) 54
Eam1105I GACNNNNNGTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 233
EcoRII CCWGG 2 cut(s) 30, 220
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
FaiI YATR 3 cut(s) 25, 27, 254
Fnu4HI GCNGC 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 149
GsuI CTGGAG 2 cut(s) 126, 137
HaeIII GGCC 1 cut(s) 225
HgaI GACGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 217
Hpy188III TCNNGA 3 cut(s) 83, 97, 286
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 2 cut(s) 129, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
HpyF3I CTNAG 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 217
Kzo9I GATC 3 cut(s) 79, 93, 288
LmnI GCTCC 2 cut(s) 156, 189
Lsp1109I GCAGC 1 cut(s) 160
MabI ACCWGGT 1 cut(s) 30
MalI GATC 3 cut(s) 81, 95, 290
MboI GATC 3 cut(s) 79, 93, 288
MluCI AATT 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 4 cut(s) 64, 150, 221, 224
MseI TTAA 2 cut(s) 117, 306
MspR9I CCNGG 2 cut(s) 32, 222
MvaI CCWGG 2 cut(s) 32, 222
MwoI GCNNNNNNNGC 1 cut(s) 189
NdeII GATC 3 cut(s) 79, 93, 288
NmeAIII GCCGAG 1 cut(s) 251
PkrI GCNGC 1 cut(s) 150
Psp6I CCWGG 2 cut(s) 30, 220
PspGI CCWGG 2 cut(s) 30, 220
PspPI GGNCC 1 cut(s) 233
SaqAI TTAA 2 cut(s) 117, 306
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 3 cut(s) 79, 93, 288
Sau96I GGNCC 1 cut(s) 233
ScrFI CCNGG 2 cut(s) 32, 222
SetI ASST 4 cut(s) 36, 68, 153, 194
SexAI ACCWGGT 1 cut(s) 30
SinI GGWCC 1 cut(s) 233
Sse9I AATT 1 cut(s) 259
StyD4I CCNGG 2 cut(s) 30, 220
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 287
TasI AATT 1 cut(s) 259
Tru1I TTAA 2 cut(s) 117, 306
Tru9I TTAA 2 cut(s) 117, 306
TscAI CASTG 2 cut(s) 136, 150
TseI GCWGC 1 cut(s) 148
TspRI CASTG 2 cut(s) 136, 150
VpaK11BI GGWCC 1 cut(s) 233
XcmI CCANNNNNNNNNTGG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.