Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Reverse (-)

28392943 .. 28395554

Gene Structure 2612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g36050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCTTTTCGATGTGTGCTTGCAAAGCTGGGGAATATTTGTGTTCGGAGTGCGCGCAGGAGATTGGTAGAAAACAAACCTCAAAAAATTTGGGATGATGAGAAATACCAAAAGCTGCTGAGCTATCGCATTGAAGTTCAACGACTGAGTGATGGTAGTCGCTGTTTTTTGCTTCCATCAGATGATTGTCTTCCATATGCTCAACCTGCGGATGATCCCAACATTATGGCTTGTGCTCATTTGGCAGTGGAAGAGTTCAACAAACAAAAGGATGCAAAACTTCAATTTGTGAGAGCGGTGAAGGCATATCGCCAGTACGATTCGTGGTGGCATTCAGACATGTACTATTACCTAACGTTGGAGGCAGTTGAAGCTGAAGTTGTTAAAACATACCAAGCAATAGTTCTTGAAAAAGAGAATGAAGACTGTCCTAATAAGCTAGAGCTTCACGTATTTGGTCAGGTTGCTGACGATGGCAGTAGGAGTATGATGATACTATATGATGACCCTACTATTTATTGGACATCTGACAACCGAGATGATCGATCAGTGGAAGGAATATTATCAAGCACAAGAGAGATAGAGGTCGCATTGCAAACAAGGAAAGGATATGTTCTCGAGGATGAAATACTTGGCTCGTTGCAGGCGCTTCCCCTCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

25.51

Weight (kDa)

5.04

Isoelectric Point (pI)

58.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	69 - 138	3e-06	Cystatin domain
SQAPI	PF16845	71 - 141	1.8e-10	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	214
AccBSI	CCGCTC	1 cut(s)	296
AccII	CGCG	1 cut(s)	55
AciI	CCGC	2 cut(s)	209, 296
AclI	AACGTT	1 cut(s)	356
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	87
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	2 cut(s)	317, 344
AfiI	CCNNNNNNNGG	1 cut(s)	358
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	6 cut(s)	134, 140, 259, 284, 371, 410
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	6 cut(s)	28, 115, 123, 374, 439, 445
AluI	AGCT	6 cut(s)	28, 115, 123, 374, 439, 445
Alw21I	GWGCWC	1 cut(s)	238
AlwI	GGATC	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	617
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	87
AspLEI	GCGC	3 cut(s)	55, 57, 649
AsuHPI	GGTGA	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	617
BbsI	GAAGAC	2 cut(s)	182, 429
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	3 cut(s)	146, 184, 467
BfaI	CTAG	1 cut(s)	440
BfoI	RGCGCY	1 cut(s)	650
BfuAI	ACCTGC	1 cut(s)	214
BisI	GCNGC	1 cut(s)	116
BlpI	GCTNAGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	617
BmsI	GCATC	1 cut(s)	262
BpiI	GAAGAC	2 cut(s)	182, 429
Bpu1102I	GCTNAGC	1 cut(s)	119
Bsa29I	ATCGAT	1 cut(s)	544
BsaAI	YACGTR	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	1 cut(s)	313
Bse3DI	GCAATG	1 cut(s)	590
BseCI	ATCGAT	1 cut(s)	544
BseGI	GGATG	4 cut(s)	100, 217, 277, 628
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	590
BseMII	CTCAG	2 cut(s)	110, 137
BseNI	ACTGG	1 cut(s)	313
BsePI	GCGCGC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	55
BshVI	ATCGAT	1 cut(s)	544
BsiHKAI	GWGCWC	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	617
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	331
BsoBI	CYCGRG	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	3 cut(s)	214, 541, 545
Bsp1720I	GCTNAGC	1 cut(s)	119
BspACI	CCGC	2 cut(s)	209, 296
BspCNI	CTCAG	2 cut(s)	111, 138
BspDI	ATCGAT	1 cut(s)	544
BspFNI	CGCG	1 cut(s)	55
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	590
BsrI	ACTGG	1 cut(s)	313
BssHII	GCGCGC	1 cut(s)	53
BssMI	GATC	3 cut(s)	214, 541, 545
Bst4CI	ACNGT	1 cut(s)	428
Bst6I	CTCTTC	1 cut(s)	246
BstBAI	YACGTR	1 cut(s)	451
BstC8I	GCNNGC	3 cut(s)	21, 55, 645
BstDEI	CTNAG	2 cut(s)	119, 146
BstF5I	GGATG	4 cut(s)	100, 217, 277, 628
BstFNI	CGCG	1 cut(s)	55
BstH2I	RGCGCY	1 cut(s)	650
BstHHI	GCGC	3 cut(s)	55, 57, 649
BstKTI	GATC	3 cut(s)	217, 544, 548
BstMBI	GATC	3 cut(s)	214, 541, 545
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 206, 242, 302, 371
BstNSI	RCATGY	1 cut(s)	343
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	2 cut(s)	182, 429
BstXI	CCANNNNNNTGG	1 cut(s)	226
Bsu15I	ATCGAT	1 cut(s)	544
BsuTUI	ATCGAT	1 cut(s)	544
BtsCI	GGATG	4 cut(s)	100, 217, 277, 628
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	252, 555
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	3 cut(s)	21, 55, 645
CfoI	GCGC	3 cut(s)	55, 57, 649
ClaI	ATCGAT	1 cut(s)	544
Csp6I	GTAC	2 cut(s)	316, 343
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	9 cut(s)	5, 28, 115, 123, 230, 374, 439, 445, 636
CviKI_1	RGCY	9 cut(s)	5, 28, 115, 123, 230, 374, 439, 445, 636
CviQI	GTAC	2 cut(s)	316, 343
DdeI	CTNAG	2 cut(s)	119, 146
DpnI	GATC	3 cut(s)	216, 543, 547
DpnII	GATC	3 cut(s)	214, 541, 545
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	617
FaeI	CATG	1 cut(s)	343
FatI	CATG	1 cut(s)	339
FauNDI	CATATG	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	4 cut(s)	107, 224, 284, 635
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	3 cut(s)	54, 56, 648
GluI	GCNGC	1 cut(s)	116
GsaI	CCCAGC	1 cut(s)	32
HaeII	RGCGCY	1 cut(s)	650
HhaI	GCGC	3 cut(s)	55, 57, 649
Hin1II	CATG	1 cut(s)	343
Hin6I	GCGC	3 cut(s)	53, 55, 647
HinP1I	GCGC	3 cut(s)	53, 55, 647
HinfI	GANTC	1 cut(s)	320
HphI	GGTGA	1 cut(s)	310
Hpy188I	TCNGA	4 cut(s)	48, 181, 337, 529
Hpy188III	TCNNGA	2 cut(s)	407, 617
HpyAV	CCTTC	2 cut(s)	295, 548
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4IV	ACGT	2 cut(s)	356, 450
HpyCH4V	TGCA	4 cut(s)	23, 275, 595, 643
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 206, 242, 302, 371
HpyF3I	CTNAG	2 cut(s)	119, 146
HpySE526I	ACGT	2 cut(s)	356, 450
Hsp92II	CATG	1 cut(s)	343
HspAI	GCGC	3 cut(s)	53, 55, 647
Kzo9I	GATC	3 cut(s)	214, 541, 545
LpnPI	CCDG	6 cut(s)	14, 43, 219, 326, 446, 629
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	2 cut(s)	356, 450
MalI	GATC	3 cut(s)	216, 543, 547
MbiI	CCGCTC	1 cut(s)	296
MboI	GATC	3 cut(s)	214, 541, 545
MboII	GAAGA	3 cut(s)	182, 263, 434
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	2 cut(s)	87, 284
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	4 cut(s)	90, 355, 577, 613
MseI	TTAA	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	331
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	5 cut(s)	25, 206, 242, 302, 371
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	3 cut(s)	214, 541, 545
NlaIII	CATG	1 cut(s)	343
NspI	RCATGY	1 cut(s)	343
PaeR7I	CTCGAG	1 cut(s)	617
PauI	GCGCGC	1 cut(s)	53
PciI	ACATGT	1 cut(s)	339
PctI	GAATGC	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	117
Ppu21I	YACGTR	1 cut(s)	451
PscI	ACATGT	1 cut(s)	339
Psp1406I	AACGTT	1 cut(s)	356
PspFI	CCCAGC	1 cut(s)	28
PteI	GCGCGC	1 cut(s)	53
RsaI	GTAC	2 cut(s)	317, 344
RsaNI	GTAC	2 cut(s)	316, 343
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	3 cut(s)	214, 541, 545
SduI	GDGCHC	1 cut(s)	238
SfaNI	GCATC	1 cut(s)	262
Sfr274I	CTCGAG	1 cut(s)	617
SlaI	CTCGAG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	2 cut(s)	87, 284
SsiI	CCGC	2 cut(s)	209, 296
SspI	AATATT	2 cut(s)	37, 561
SspMI	CTAG	1 cut(s)	440
TaaI	ACNGT	1 cut(s)	428
TaiI	ACGT	2 cut(s)	359, 453
TaqI	TCGA	3 cut(s)	10, 544, 618
TasI	AATT	2 cut(s)	87, 284
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	2 cut(s)	252, 555
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	2 cut(s)	435, 639
TspRI	CASTG	2 cut(s)	252, 555
XapI	RAATTY	1 cut(s)	87
XceI	RCATGY	1 cut(s)	343
XhoI	CTCGAG	1 cut(s)	617
XspI	CTAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.