Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Forward (+)

45087570 .. 45088852

Gene Structure 1283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCTTTTCGGTCGGTGCTTGCAAAGCTGGGGGTTAATTGTGCCCAATGGGGAGAGAGAAGGAGATTGGTTGCAGCCTTTGACACCAGAACCCCACTAAAGTATCATAATATTTGGGATGATGATGAATACCAAGATCGGATGCAGCGGCGCATTCGAGCACGACGCCACCGAGGTCAGCGCTTTGGTCCATTCCCATTTCAGGCTGGTTATCCACTTCGTCAACCTACGGATAATCCTAAGATTATGGCTTATGCCCGTTTGGCAGTGGAACACTTCAACAAACAAAAGAATTCCCAACTGCAATTTGTGAGAGCGGTAAAGGCAAGTTGCCAGGAGTCCTACAATTGGGGGCACTTCTATTATCTAACGCTGGAGGCAGTCGATGCTGAAGTTGTCAAAATGTACCAAGCAATAGTTAATGACGATCTTGATGACCCAAAGCTCGGCCTGTTTGGTCTTGTTGCTGATAATGGCAATGGGAGTTTGTTAAAATTAATTCATAACGATCATGATCGTTATTGTTTCTGGGCACTTGACACCCGGAATCATCTACCAACGGAAATTGAATATTCTCTCAAAGAGCAGATAAAGGCTCCAATGCAGACCAAGATATTTTCTCAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

209

Amino Acids

24.47

Weight (kDa)

9.22

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	78 - 142	3.4e-07	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	317
AciI	CCGC	2 cut(s)	148, 317
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	411
AcyI	GRCGYC	1 cut(s)	166
AfaI	GTAC	1 cut(s)	407
AfeI	AGCGCT	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	202, 348, 446
AgsI	TTSAA	2 cut(s)	280, 569
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	2 cut(s)	28, 445
AluI	AGCT	2 cut(s)	28, 445
Alw21I	GWGCWC	1 cut(s)	163
Aor51HI	AGCGCT	1 cut(s)	182
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	2 cut(s)	74, 145
ApoI	RAATTY	1 cut(s)	292
AseI	ATTAAT	1 cut(s)	497
AspLEI	GCGC	2 cut(s)	153, 183
AspS9I	GGNCC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	188
BaeGI	GKGCMC	3 cut(s)	46, 357, 535
BaeI	ACNNNNGTAYC	2 cut(s)	86, 119
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	86, 157
BciT130I	CCWGG	1 cut(s)	335
BcnI	CCSGG	1 cut(s)	544
BfoI	RGCGCY	1 cut(s)	184
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	3 cut(s)	75, 146, 149
BlsI	GCNGC	3 cut(s)	76, 147, 150
Bme1390I	CCNGG	2 cut(s)	335, 544
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	2 cut(s)	335, 544
BmsI	GCATC	2 cut(s)	132, 376
BpmI	CTGGAG	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	544
BsaBI	GATNNNNATC	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 348, 446
Bse3DI	GCAATG	1 cut(s)	484
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	2 cut(s)	124, 147
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	3 cut(s)	202, 348, 446
BseMI	GCAATG	1 cut(s)	484
BseSI	GKGCMC	3 cut(s)	46, 357, 535
BseXI	GCAGC	2 cut(s)	86, 157
BseYI	CCCAGC	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	450
BsiEI	CGRYCG	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	544
BslI	CCNNNNNNNGG	3 cut(s)	202, 348, 446
BsmI	GAATGC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	450
Bsp1286I	GDGCHC	4 cut(s)	46, 163, 357, 535
Bsp143I	GATC	4 cut(s)	136, 427, 508, 514
BspACI	CCGC	2 cut(s)	148, 317
BspANI	GGCC	1 cut(s)	450
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	1 cut(s)	597
BsrBI	CCGCTC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	484
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	4 cut(s)	136, 427, 508, 514
BssNI	GRCGYC	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	335
BstACI	GRCGYC	1 cut(s)	166
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	240, 621
BstF5I	GGATG	2 cut(s)	124, 147
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	2 cut(s)	153, 183
BstKTI	GATC	4 cut(s)	139, 430, 511, 517
BstMBI	GATC	4 cut(s)	136, 427, 508, 514
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 263, 323, 386
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	2 cut(s)	333, 542
BstSLI	GKGCMC	3 cut(s)	46, 357, 535
BstV1I	GCAGC	2 cut(s)	86, 157
BsuRI	GGCC	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	124, 147
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	21
CciI	TCATGA	1 cut(s)	511
CfoI	GCGC	2 cut(s)	153, 183
Cfr13I	GGNCC	1 cut(s)	188
CseI	GACGC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	1 cut(s)	512
CviJI	RGCY	8 cut(s)	5, 28, 77, 206, 251, 445, 450, 596
CviKI_1	RGCY	8 cut(s)	5, 28, 77, 206, 251, 445, 450, 596
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	2 cut(s)	240, 621
DpnI	GATC	4 cut(s)	138, 429, 510, 516
DpnII	GATC	4 cut(s)	136, 427, 508, 514
Eco47I	GGWCC	1 cut(s)	188
Eco47III	AGCGCT	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	411
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	333
FaeI	CATG	1 cut(s)	515
FaiI	YATR	5 cut(s)	108, 248, 255, 504, 513
FatI	CATG	1 cut(s)	511
Fnu4HI	GCNGC	3 cut(s)	75, 146, 149
FokI	GGATG	2 cut(s)	131, 154
Fsp4HI	GCNGC	3 cut(s)	75, 146, 149
GlaI	GCGC	2 cut(s)	152, 182
GluI	GCNGC	3 cut(s)	75, 146, 149
GsaI	CCCAGC	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	395
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	1 cut(s)	544
HgaI	GACGC	1 cut(s)	174
HhaI	GCGC	2 cut(s)	153, 183
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	515
Hin6I	GCGC	2 cut(s)	151, 181
HinP1I	GCGC	2 cut(s)	151, 181
HincII	GTYRAC	1 cut(s)	224
HindII	GTYRAC	1 cut(s)	224
HinfI	GANTC	2 cut(s)	338, 547
HpaII	CCGG	1 cut(s)	544
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	2 cut(s)	431, 512
Hpy8I	GTNNAC	1 cut(s)	224
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	1 cut(s)	54
HpyCH4V	TGCA	5 cut(s)	23, 74, 145, 304, 604
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 263, 323, 386
HpyF3I	CTNAG	2 cut(s)	240, 621
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	515
HspAI	GCGC	2 cut(s)	151, 181
Kzo9I	GATC	4 cut(s)	136, 427, 508, 514
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	2 cut(s)	86, 157
LweI	GCATC	2 cut(s)	132, 376
MalI	GATC	4 cut(s)	138, 429, 510, 516
MbiI	CCGCTC	1 cut(s)	317
MboI	GATC	4 cut(s)	136, 427, 508, 514
MfeI	CAATTG	1 cut(s)	346
MhlI	GDGCHC	4 cut(s)	46, 163, 357, 535
MluCI	AATT	7 cut(s)	37, 292, 305, 346, 494, 498, 564
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	2 cut(s)	167, 370
MseI	TTAA	4 cut(s)	36, 420, 491, 497
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	1 cut(s)	544
MspR9I	CCNGG	2 cut(s)	335, 544
MunI	CAATTG	1 cut(s)	346
Mva1269I	GAATGC	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	4 cut(s)	25, 263, 323, 386
NciI	CCSGG	1 cut(s)	544
NdeII	GATC	4 cut(s)	136, 427, 508, 514
NlaIII	CATG	1 cut(s)	515
NlaIV	GGNNCC	1 cut(s)	597
NmeAIII	GCCGAG	1 cut(s)	426
PagI	TCATGA	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	1 cut(s)	169
PctI	GAATGC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	547
PkrI	GCNGC	3 cut(s)	76, 147, 150
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PshBI	ATTAAT	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	188
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SaqAI	TTAA	4 cut(s)	36, 420, 491, 497
SatI	GCNGC	3 cut(s)	75, 146, 149
Sau3AI	GATC	4 cut(s)	136, 427, 508, 514
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	335, 544
SduI	GDGCHC	4 cut(s)	46, 163, 357, 535
SetI	ASST	4 cut(s)	30, 178, 229, 447
SfaNI	GCATC	2 cut(s)	132, 376
SinI	GGWCC	1 cut(s)	188
Sse9I	AATT	7 cut(s)	37, 292, 305, 346, 494, 498, 564
SsiI	CCGC	2 cut(s)	148, 317
SspI	AATATT	2 cut(s)	112, 572
StyD4I	CCNGG	2 cut(s)	333, 542
TaqI	TCGA	2 cut(s)	157, 384
TasI	AATT	7 cut(s)	37, 292, 305, 346, 494, 498, 564
TauI	GCSGC	1 cut(s)	151
TfiI	GAWTC	1 cut(s)	547
Tru1I	TTAA	4 cut(s)	36, 420, 491, 497
Tru9I	TTAA	4 cut(s)	36, 420, 491, 497
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	2 cut(s)	74, 145
TspDTI	ATGAA	2 cut(s)	141, 491
TspGWI	ACGGA	2 cut(s)	245, 575
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	188
VspI	ATTAAT	1 cut(s)	497
XapI	RAATTY	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.