FvH4_4g00571

Conserved oligomeric Golgi complex subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
513700 .. 515109
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00571.t1

Sequence Viewer

Length: 714 bp
ATGCGATGCATAGCTTACCAACGCGCCTTGGATCTCAACCTCGACAGCCTCCTCTCCCAGCGCTCCGATCTCGATAAGCACCTCTCCAGCCTCCAGAAGTCCTCCCAGGTCCTCGAGATCGTCAAGCCCGACGCCGATCATGTCCTCTCCAATGTCGCCTCCACCTGCGACCTCGTCGACCACGTCAGCGCCAAGGTCCGAGAGCTCGACCTCGCACAGTCGCGCGTCAACTCCACGCTCCTCCGCCTCGACGCCATCGTCGAGCGCACCAACTGCATCGACGGCGTCAAACAGGCTCTCGACGCGCAGGACTACAAGTCCGCTGCCAAATTTGTCCAGAGGTTTATACAGATTGAATCTGAGTATCGTGATTCGGGATCGAAGCAAAGGGACCAGCTCATGGAGTCGAAGAAGCTTCTAGAATCGATTGTGAAGAAGAAGCTCAGCGCCGCCGCTGTACACGCCGTTAGGGATATAGGAGGAGGGTTTGCAGGCTTATGTGAGCTACTTGAGGAAGGTGATTGGGATGAGATCGCGGCTGGAATTCAAGCATTTGATGGAGTTGATGGAGCAGAAGAGCAATCAGAGCCAGCAGTAACTAGTTACATGGGAAAATCCTGTGACCGGAATCCGACGGTCGGGGAAATTCCGGTGATCGGAATCCGGCGGTTGGTGACCGGAGTCCGAGGTTCCGGCCAAGTCTTTTCATGTTGA

Protein Analysis

238

Amino Acids

25.88

Weight (kDa)

5.21

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG4_N PF20663 28 - 122 1.2e-25 Conserved oligomeric Golgi complex subunit 4, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 173
AasI GACNNNNNNGTC 1 cut(s) 257
Acc36I ACCTGC 1 cut(s) 173
AccB7I CCANNNNNTGG 1 cut(s) 400
AccI GTMKAC 1 cut(s) 177
AccII CGCG 5 cut(s) 24, 223, 225, 305, 536
AciI CCGC 6 cut(s) 244, 321, 450, 453, 536, 667
AclWI GGATC 2 cut(s) 39, 385
AcoI YGGCCR 1 cut(s) 694
AcsI RAATTY 3 cut(s) 329, 543, 645
AcyI GRCGYC 3 cut(s) 132, 252, 285
AfaI GTAC 1 cut(s) 459
AfeI AGCGCT 1 cut(s) 62
AfiI CCNNNNNNNGG 5 cut(s) 400, 624, 638, 656, 670
AgsI TTSAA 2 cut(s) 356, 548
AhdI GACNNNNNGTC 1 cut(s) 316
AhlI ACTAGT 1 cut(s) 599
AjiI CACGTC 1 cut(s) 184
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 6 cut(s) 14, 205, 397, 415, 442, 505
AluI AGCT 6 cut(s) 14, 205, 397, 415, 442, 505
Alw21I GWGCWC 1 cut(s) 207
AlwI GGATC 2 cut(s) 39, 385
Ama87I CYCGRG 1 cut(s) 113
Aor51HI AGCGCT 1 cut(s) 62
AoxI GGCC 1 cut(s) 694
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 3 cut(s) 329, 543, 645
AspLEI GCGC 7 cut(s) 26, 63, 191, 225, 267, 307, 449
AspS9I GGNCC 3 cut(s) 109, 196, 391
AsuHPI GGTGA 3 cut(s) 530, 664, 685
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 3 cut(s) 109, 196, 391
BanII GRGCYC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 310
BccI CCATC 3 cut(s) 263, 551, 560
BceAI ACGGC 2 cut(s) 298, 449
BciT130I CCWGG 1 cut(s) 107
BcuI ACTAGT 1 cut(s) 599
BfaI CTAG 2 cut(s) 419, 600
BfoI RGCGCY 3 cut(s) 64, 192, 450
BfuAI ACCTGC 1 cut(s) 173
BisI GCNGC 4 cut(s) 324, 450, 453, 537
BlpI GCTNAGC 1 cut(s) 443
BlsI GCNGC 4 cut(s) 325, 451, 454, 538
Bme1390I CCNGG 1 cut(s) 107
Bme18I GGWCC 3 cut(s) 109, 196, 391
BmeRI GACNNNNNGTC 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 113
BmgBI CACGTC 1 cut(s) 184
BmgT120I GGNCC 3 cut(s) 109, 196, 391
BmiI GGNNCC 2 cut(s) 392, 691
BmrFI CCNGG 1 cut(s) 107
BmsI GCATC 1 cut(s) 285
BoxI GACNNNNGTC 1 cut(s) 680
BpmI CTGGAG 2 cut(s) 70, 77
Bpu1102I GCTNAGC 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 530
Bsa29I ATCGAT 1 cut(s) 425
BsaBI GATNNNNATC 1 cut(s) 659
BsaHI GRCGYC 3 cut(s) 132, 252, 285
BsaJI CCNNGG 4 cut(s) 27, 105, 192, 685
BsaWI WCCGGW 3 cut(s) 624, 649, 677
Bsc4I CCNNNNNNNGG 5 cut(s) 400, 624, 638, 656, 670
Bse8I GATNNNNATC 1 cut(s) 659
BseBI CCWGG 1 cut(s) 107
BseCI ATCGAT 1 cut(s) 425
BseDI CCNNGG 4 cut(s) 27, 105, 192, 685
BseGI GGATG 1 cut(s) 532
BseJI GATNNNNATC 1 cut(s) 659
BseLI CCNNNNNNNGG 5 cut(s) 400, 624, 638, 656, 670
BseMII CTCAG 2 cut(s) 351, 457
BseRI GAGGAG 3 cut(s) 41, 230, 495
BseXI GCAGC 1 cut(s) 310
BseYI CCCAGC 1 cut(s) 57
Bsh1236I CGCG 5 cut(s) 24, 223, 225, 305, 536
Bsh1285I CGRYCG 1 cut(s) 639
BshFI GGCC 1 cut(s) 696
BshVI ATCGAT 1 cut(s) 425
BsiEI CGRYCG 1 cut(s) 639
BsiHKAI GWGCWC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 5 cut(s) 625, 650, 664, 678, 693
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 5 cut(s) 400, 624, 638, 656, 670
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 1 cut(s) 696
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 207
Bsp1407I TGTACA 1 cut(s) 457
Bsp143I GATC 7 cut(s) 31, 67, 117, 136, 377, 531, 654
Bsp1720I GCTNAGC 1 cut(s) 443
BspACI CCGC 6 cut(s) 244, 321, 450, 453, 536, 667
BspANI GGCC 1 cut(s) 696
BspCNI CTCAG 2 cut(s) 352, 456
BspDI ATCGAT 1 cut(s) 425
BspFNI CGCG 5 cut(s) 24, 223, 225, 305, 536
BspLI GGNNCC 2 cut(s) 392, 691
BspMI ACCTGC 1 cut(s) 173
BspPI GGATC 2 cut(s) 39, 385
BspQI GCTCTTC 1 cut(s) 570
BsrGI TGTACA 1 cut(s) 457
BssECI CCNNGG 4 cut(s) 27, 105, 192, 685
BssMI GATC 7 cut(s) 31, 67, 117, 136, 377, 531, 654
BssNI GRCGYC 3 cut(s) 132, 252, 285
BssT1I CCWWGG 2 cut(s) 27, 192
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 219, 637
Bst6I CTCTTC 1 cut(s) 570
BstACI GRCGYC 3 cut(s) 132, 252, 285
BstAPI GCANNNNNTGC 1 cut(s) 273
BstAUI TGTACA 1 cut(s) 457
BstC8I GCNNGC 2 cut(s) 493, 591
BstDEI CTNAG 2 cut(s) 360, 443
BstEII GGTNACC 1 cut(s) 673
BstF5I GGATG 1 cut(s) 532
BstFNI CGCG 5 cut(s) 24, 223, 225, 305, 536
BstH2I RGCGCY 3 cut(s) 64, 192, 450
BstHHI GCGC 7 cut(s) 26, 63, 191, 225, 267, 307, 449
BstKTI GATC 7 cut(s) 34, 70, 120, 139, 380, 534, 657
BstMBI GATC 7 cut(s) 31, 67, 117, 136, 377, 531, 654
BstMCI CGRYCG 1 cut(s) 639
BstMWI GCNNNNNNNGC 5 cut(s) 273, 282, 302, 461, 586
BstNI CCWGG 1 cut(s) 107
BstPAI GACNNNNGTC 1 cut(s) 680
BstPI GGTNACC 1 cut(s) 673
BstSCI CCNGG 1 cut(s) 105
BstUI CGCG 5 cut(s) 24, 223, 225, 305, 536
BstV1I GCAGC 1 cut(s) 310
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
Bsu15I ATCGAT 1 cut(s) 425
BsuRI GGCC 1 cut(s) 696
BsuTUI ATCGAT 1 cut(s) 425
BtgZI GCGATG 1 cut(s) 19
BtrI CACGTC 1 cut(s) 184
BtsCI GGATG 1 cut(s) 532
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 493, 591
CfoI GCGC 7 cut(s) 26, 63, 191, 225, 267, 307, 449
Cfr13I GGNCC 3 cut(s) 109, 196, 391
ClaI ATCGAT 1 cut(s) 425
CseI GACGC 5 cut(s) 140, 214, 260, 274, 311
Csp6I GTAC 1 cut(s) 458
CviAII CATG 4 cut(s) 140, 400, 607, 708
CviQI GTAC 1 cut(s) 458
DdeI CTNAG 2 cut(s) 360, 443
DpnI GATC 7 cut(s) 33, 69, 119, 138, 379, 533, 656
DpnII GATC 7 cut(s) 31, 67, 117, 136, 377, 531, 654
DrdI GACNNNNNNGTC 1 cut(s) 257
DriI GACNNNNNGTC 1 cut(s) 316
DseDI GACNNNNNNGTC 1 cut(s) 257
EaeI YGGCCR 1 cut(s) 694
Eam1104I CTCTTC 1 cut(s) 570
Eam1105I GACNNNNNGTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 570
EciI GGCGGA 1 cut(s) 233
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 27, 192
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 3 cut(s) 109, 196, 391
Eco47III AGCGCT 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 673
EcoICRI GAGCTC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 109
EcoO65I GGTNACC 1 cut(s) 673
EcoRI GAATTC 1 cut(s) 543
EcoRII CCWGG 1 cut(s) 105
EcoT14I CCWWGG 2 cut(s) 27, 192
EcoT22I ATGCAT 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 2 cut(s) 27, 192
FaeI CATG 4 cut(s) 143, 403, 610, 711
FaiI YATR 8 cut(s) 11, 141, 347, 401, 476, 499, 608, 709
FaqI GGGAC 1 cut(s) 404
FatI CATG 4 cut(s) 139, 399, 606, 707
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 4 cut(s) 324, 450, 453, 537
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 4 cut(s) 324, 450, 453, 537
FspBI CTAG 2 cut(s) 419, 600
GlaI GCGC 7 cut(s) 25, 62, 190, 224, 266, 306, 448
GluI GCNGC 4 cut(s) 324, 450, 453, 537
GsaI CCCAGC 1 cut(s) 61
GsuI CTGGAG 2 cut(s) 70, 77
HaeII RGCGCY 3 cut(s) 64, 192, 450
HaeIII GGCC 1 cut(s) 696
HapII CCGG 5 cut(s) 625, 650, 664, 678, 693
HgaI GACGC 5 cut(s) 140, 214, 260, 274, 311
HhaI GCGC 7 cut(s) 26, 63, 191, 225, 267, 307, 449
Hin1I GRCGYC 3 cut(s) 132, 252, 285
Hin1II CATG 4 cut(s) 143, 403, 610, 711
Hin6I GCGC 7 cut(s) 24, 61, 189, 223, 265, 305, 447
HinP1I GCGC 7 cut(s) 24, 61, 189, 223, 265, 305, 447
HincII GTYRAC 2 cut(s) 178, 229
HindII GTYRAC 2 cut(s) 178, 229
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 7 cut(s) 356, 371, 404, 422, 628, 660, 681
HpaII CCGG 5 cut(s) 625, 650, 664, 678, 693
HphI GGTGA 3 cut(s) 530, 664, 685
Hpy166II GTNNAC 3 cut(s) 178, 229, 460
Hpy188I TCNGA 7 cut(s) 67, 200, 361, 586, 633, 659, 686
Hpy188III TCNNGA 8 cut(s) 71, 94, 115, 299, 337, 368, 375, 419
Hpy8I GTNNAC 3 cut(s) 178, 229, 460
Hpy99I CGWCG 7 cut(s) 134, 179, 254, 263, 284, 305, 637
HpyAV CCTTC 1 cut(s) 509
HpyCH4III ACNGT 2 cut(s) 219, 637
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 3 cut(s) 9, 276, 491
HpyF10VI GCNNNNNNNGC 5 cut(s) 273, 282, 302, 461, 586
HpyF3I CTNAG 2 cut(s) 360, 443
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 3 cut(s) 132, 252, 285
Hsp92II CATG 4 cut(s) 143, 403, 610, 711
HspAI GCGC 7 cut(s) 24, 61, 189, 223, 265, 305, 447
Kzo9I GATC 7 cut(s) 31, 67, 117, 136, 377, 531, 654
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 3 cut(s) 68, 243, 569
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 285
MaeI CTAG 2 cut(s) 419, 600
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 4 cut(s) 595, 602, 620, 673
MalI GATC 7 cut(s) 33, 69, 119, 138, 379, 533, 656
MboI GATC 7 cut(s) 31, 67, 117, 136, 377, 531, 654
MboII GAAGA 4 cut(s) 421, 445, 448, 587
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 3 cut(s) 329, 543, 645
MlyI GAGTC 2 cut(s) 413, 690
MmeI TCCRAC 1 cut(s) 656
Mph1103I ATGCAT 1 cut(s) 11
MspA1I CMGCKG 2 cut(s) 323, 455
MspI CCGG 5 cut(s) 625, 650, 664, 678, 693
MspR9I CCNGG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 107
MvnI CGCG 5 cut(s) 24, 223, 225, 305, 536
MwoI GCNNNNNNNGC 5 cut(s) 273, 282, 302, 461, 586
NdeII GATC 7 cut(s) 31, 67, 117, 136, 377, 531, 654
NlaIII CATG 4 cut(s) 143, 403, 610, 711
NlaIV GGNNCC 2 cut(s) 392, 691
NmuCI GTSAC 2 cut(s) 620, 673
NsiI ATGCAT 1 cut(s) 11
PaeR7I CTCGAG 1 cut(s) 113
PaqCI CACCTGC 1 cut(s) 173
PciSI GCTCTTC 1 cut(s) 570
PcsI WCGNNNNNNNCGW 4 cut(s) 126, 180, 255, 258
PfeI GAWTC 5 cut(s) 356, 371, 422, 628, 660
PflFI GACNNNGTC 3 cut(s) 173, 182, 284
PflMI CCANNNNNTGG 1 cut(s) 400
PkrI GCNGC 4 cut(s) 325, 451, 454, 538
PleI GAGTC 2 cut(s) 412, 689
PpsI GAGTC 2 cut(s) 412, 689
PpuMI RGGWCCY 1 cut(s) 109
PshAI GACNNNNGTC 1 cut(s) 680
Psp124BI GAGCTC 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 105
PspEI GGTNACC 1 cut(s) 673
PspFI CCCAGC 1 cut(s) 57
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 392, 691
PspPI GGNCC 3 cut(s) 109, 196, 391
PspPPI RGGWCCY 1 cut(s) 109
PsuI RGATCY 1 cut(s) 31
PsyI GACNNNGTC 3 cut(s) 173, 182, 284
RsaI GTAC 1 cut(s) 459
RsaNI GTAC 1 cut(s) 458
SacI GAGCTC 1 cut(s) 207
SalI GTCGAC 1 cut(s) 176
SapI GCTCTTC 1 cut(s) 570
SatI GCNGC 4 cut(s) 324, 450, 453, 537
Sau3AI GATC 7 cut(s) 31, 67, 117, 136, 377, 531, 654
Sau96I GGNCC 3 cut(s) 109, 196, 391
SchI GAGTC 2 cut(s) 413, 690
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 1 cut(s) 285
Sfr274I CTCGAG 1 cut(s) 113
SinI GGWCC 3 cut(s) 109, 196, 391
SlaI CTCGAG 1 cut(s) 113
SmlI CTYRAG 2 cut(s) 113, 509
SmoI CTYRAG 2 cut(s) 113, 509
SpeI ACTAGT 1 cut(s) 599
Sse9I AATT 3 cut(s) 329, 543, 645
SsiI CCGC 6 cut(s) 244, 321, 450, 453, 536, 667
SspMI CTAG 2 cut(s) 419, 600
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 105
StyI CCWWGG 2 cut(s) 27, 192
TaaI ACNGT 2 cut(s) 219, 637
TaiI ACGT 1 cut(s) 186
TasI AATT 3 cut(s) 329, 543, 645
TatI WGTACW 1 cut(s) 457
TauI GCSGC 3 cut(s) 452, 455, 539
TfiI GAWTC 5 cut(s) 356, 371, 422, 628, 660
TseFI GTSAC 2 cut(s) 620, 673
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 2 cut(s) 620, 673
TspDTI ATGAA 1 cut(s) 696
Tth111I GACNNNGTC 3 cut(s) 173, 182, 284
Van91I CCANNNNNTGG 1 cut(s) 400
VpaK11BI GGWCC 3 cut(s) 109, 196, 391
XapI RAATTY 3 cut(s) 329, 543, 645
XbaI TCTAGA 1 cut(s) 418
XhoI CTCGAG 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 2 cut(s) 419, 600
Zsp2I ATGCAT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.