Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Reverse (-)

14804314 .. 14807517

Gene Structure 3204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCCGGATTTTGGTGGTTTCTCCGTCATCGGGAGAGTAGTTTCGACCATATTCAAGGACAAGGAGGAGAAGTTGGGGCTTGGGTCGTTGGGCCTTAGTTCAAATGTGGTGGTCTATTCAATTGCAGGTTCAAGGCAATGGACTAGTGGCTTGGGATTGTTTTTGGCCTATCGCATTTCACTCTCCTCCTCCGCCGCGTCCACCGCTCGCCCCGGATATCAACCTCGACTACCTCTTCTCTCCCCGTGCTCCGACCTCGATAAGCACCTCTCCAATCTCCGTAAATCCTCCCGTGTCCTCGACATCGTCAAGTCCGACGCCGACCACGTCCTCTCCAACGTCTCATCCACCGCGACCTCGCCGACCACGTCAACCCCAAGATCCGCGACCTCTCCAATCTCTAGAAATCCTCCCGTGTCCTCGACATCGTCAAGTCCGACGCCTACCACGTCCTCTCCAACGTCTCCTCCACCTCGCGACCTCTCCGATCACGTCGGCCCCAAGGTCTACGAGCTCAACCTCGCCCGATCCCCGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

179

Amino Acids

18.83

Weight (kDa)

9.64

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	116
AccBSI	CCGCTC	1 cut(s)	206
AccI	GTMKAC	1 cut(s)	507
AccII	CGCG	4 cut(s)	197, 353, 386, 477
AciI	CCGC	5 cut(s)	192, 195, 204, 351, 384
AclWI	GGATC	2 cut(s)	375, 522
AcyI	GRCGYC	2 cut(s)	318, 440
AfiI	CCNNNNNNNGG	2 cut(s)	11, 30
AgsI	TTSAA	4 cut(s)	55, 102, 120, 132
AhlI	ACTAGT	1 cut(s)	143
AjiI	CACGTC	4 cut(s)	328, 369, 450, 493
AluBI	AGCT	1 cut(s)	514
AluI	AGCT	1 cut(s)	514
Alw21I	GWGCWC	2 cut(s)	251, 516
Alw26I	GTCTC	2 cut(s)	346, 468
AlwI	GGATC	2 cut(s)	375, 522
AoxI	GGCC	3 cut(s)	91, 165, 496
AspS9I	GGNCC	2 cut(s)	91, 497
AsuC2I	CCSGG	1 cut(s)	213
BanII	GRGCYC	1 cut(s)	516
Bbv12I	GWGCWC	2 cut(s)	251, 516
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	2 cut(s)	346, 468
BcuI	ACTAGT	1 cut(s)	143
BfaI	CTAG	2 cut(s)	144, 402
BfuAI	ACCTGC	1 cut(s)	116
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	213
BmgBI	CACGTC	4 cut(s)	328, 369, 450, 493
BmgT120I	GGNCC	2 cut(s)	91, 497
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	213
BsaHI	GRCGYC	2 cut(s)	318, 440
BsaJI	CCNNGG	2 cut(s)	211, 501
BsaXI	ACNNNNNCTCC	8 cut(s)	56, 86, 317, 347, 439, 451, 469, 481
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 30
Bse3DI	GCAATG	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	211, 501
BseGI	GGATG	1 cut(s)	344
BseLI	CCNNNNNNNGG	2 cut(s)	11, 30
BseMI	GCAATG	1 cut(s)	143
BseRI	GAGGAG	4 cut(s)	80, 175, 178, 456
Bsh1236I	CGCG	4 cut(s)	197, 353, 386, 477
BshFI	GGCC	3 cut(s)	93, 167, 498
BsiHKAI	GWGCWC	2 cut(s)	251, 516
BsiSI	CCGG	2 cut(s)	5, 213
BslI	CCNNNNNNNGG	2 cut(s)	11, 30
BsmAI	GTCTC	2 cut(s)	346, 468
BsmBI	CGTCTC	2 cut(s)	346, 468
BsnI	GGCC	3 cut(s)	93, 167, 498
Bsp1286I	GDGCHC	2 cut(s)	251, 516
Bsp143I	GATC	3 cut(s)	380, 487, 527
Bsp68I	TCGCGA	1 cut(s)	477
BspACI	CCGC	5 cut(s)	192, 195, 204, 351, 384
BspANI	GGCC	3 cut(s)	93, 167, 498
BspFNI	CGCG	4 cut(s)	197, 353, 386, 477
BspLI	GGNNCC	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	116
BspPI	GGATC	2 cut(s)	375, 522
BsrBI	CCGCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	211, 501
BssMI	GATC	3 cut(s)	380, 487, 527
BssNI	GRCGYC	2 cut(s)	318, 440
BssT1I	CCWWGG	1 cut(s)	501
Bst6I	CTCTTC	1 cut(s)	240
BstACI	GRCGYC	2 cut(s)	318, 440
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	344
BstFNI	CGCG	4 cut(s)	197, 353, 386, 477
BstKTI	GATC	3 cut(s)	383, 490, 530
BstMAI	GTCTC	2 cut(s)	346, 468
BstMBI	GATC	3 cut(s)	380, 487, 527
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	211
BstUI	CGCG	4 cut(s)	197, 353, 386, 477
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BsuRI	GGCC	3 cut(s)	93, 167, 498
BtrI	CACGTC	4 cut(s)	328, 369, 450, 493
BtsCI	GGATG	1 cut(s)	344
BtuMI	TCGCGA	1 cut(s)	477
BveI	ACCTGC	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	91, 497
CseI	GACGC	3 cut(s)	186, 326, 448
CspCI	CAANNNNNGTGG	2 cut(s)	90, 125
CviJI	RGCY	6 cut(s)	79, 93, 150, 167, 498, 514
CviKI_1	RGCY	6 cut(s)	79, 93, 150, 167, 498, 514
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	3 cut(s)	382, 489, 529
DpnII	GATC	3 cut(s)	380, 487, 527
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	514
Eco130I	CCWWGG	1 cut(s)	501
Eco24I	GRGCYC	1 cut(s)	516
Eco32I	GATATC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	514
EcoICRI	GAGCTC	1 cut(s)	514
EcoRV	GATATC	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	501
Esp3I	CGTCTC	2 cut(s)	346, 468
FaiI	YATR	1 cut(s)	50
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	331
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	2 cut(s)	144, 402
GluI	GCNGC	1 cut(s)	195
HaeIII	GGCC	3 cut(s)	93, 167, 498
HapII	CCGG	2 cut(s)	5, 213
HgaI	GACGC	3 cut(s)	186, 326, 448
Hin1I	GRCGYC	2 cut(s)	318, 440
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HpaII	CCGG	2 cut(s)	5, 213
Hpy166II	GTNNAC	3 cut(s)	201, 372, 508
Hpy188I	TCNGA	4 cut(s)	253, 316, 438, 487
Hpy188III	TCNNGA	3 cut(s)	31, 402, 476
Hpy8I	GTNNAC	3 cut(s)	201, 372, 508
Hpy99I	CGWCG	3 cut(s)	320, 442, 497
HpyCH4IV	ACGT	6 cut(s)	327, 339, 368, 449, 461, 492
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	6 cut(s)	327, 339, 368, 449, 461, 492
Hsp92I	GRCGYC	2 cut(s)	318, 440
Kzo9I	GATC	3 cut(s)	380, 487, 527
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	3 cut(s)	18, 111, 226
MaeI	CTAG	2 cut(s)	144, 402
MaeII	ACGT	6 cut(s)	327, 339, 368, 449, 461, 492
MalI	GATC	3 cut(s)	382, 489, 529
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	3 cut(s)	380, 487, 527
MboII	GAAGA	1 cut(s)	227
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	2 cut(s)	251, 516
MluCI	AATT	1 cut(s)	120
MmeI	TCCRAC	5 cut(s)	276, 339, 360, 461, 482
MseI	TTAA	1 cut(s)	538
MspI	CCGG	2 cut(s)	5, 213
MspR9I	CCNGG	1 cut(s)	213
MunI	CAATTG	1 cut(s)	120
MvnI	CGCG	4 cut(s)	197, 353, 386, 477
MwoI	GCNNNNNNNGC	1 cut(s)	203
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	3 cut(s)	380, 487, 527
NlaIV	GGNNCC	1 cut(s)	499
NruI	TCGCGA	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	5 cut(s)	312, 324, 365, 434, 446
PflFI	GACNNNGTC	4 cut(s)	305, 326, 367, 427
PkrI	GCNGC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	516
PspN4I	GGNNCC	1 cut(s)	499
PspPI	GGNCC	2 cut(s)	91, 497
PsuI	RGATCY	1 cut(s)	380
PsyI	GACNNNGTC	4 cut(s)	305, 326, 367, 427
RruI	TCGCGA	1 cut(s)	477
SacI	GAGCTC	1 cut(s)	516
SaqAI	TTAA	1 cut(s)	538
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	3 cut(s)	380, 487, 527
Sau96I	GGNCC	2 cut(s)	91, 497
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	2 cut(s)	251, 516
SpeI	ACTAGT	1 cut(s)	143
Sse9I	AATT	1 cut(s)	120
SsiI	CCGC	5 cut(s)	192, 195, 204, 351, 384
SspMI	CTAG	2 cut(s)	144, 402
SstI	GAGCTC	1 cut(s)	516
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	501
TaiI	ACGT	6 cut(s)	330, 342, 371, 452, 464, 495
TaqI	TCGA	5 cut(s)	44, 226, 258, 300, 422
TasI	AATT	1 cut(s)	120
TauI	GCSGC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	538
Tru9I	TTAA	1 cut(s)	538
TspGWI	ACGGA	2 cut(s)	13, 269
Tth111I	GACNNNGTC	4 cut(s)	305, 326, 367, 427
XbaI	TCTAGA	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	507
XspI	CTAG	2 cut(s)	144, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.