Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8086664.1

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Forward (+)

129 .. 589

Gene Structure 461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8086664.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 461 bp

atgagcaatacattcaagcaagctttgaatgctggcttggagcaacttgtggcaactgtgacaccacgtatccgtccagtgcttgataatgttgcaaccatcagctatgagctatcagaggctgaatatgcggacaatgaggttaatgacccatgggttcaagggcttcttcatgctgttgagacgaatgcagcatggctgcagtcactaatgactgccaacaactacgattcgttcatacatttgataattgaattccttgtgaagaggcttgaagtaattatgatgcagaaaagatttagtcaacttggaggccttcagctcgacagagattgtagggcattagtgagtcacttttctagcatgactcaaagaactgttagagacaagtttgctcggctcactcaaatggcaaccatcctcaacttagaaaaggtctctgagattctggatttctgggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

154

Amino Acids

17.58

Weight (kDa)

5.33

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	131
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	302
AgsI	TTSAA	5 cut(s)	16, 28, 161, 254, 275
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	4 cut(s)	23, 105, 112, 322
AluI	AGCT	4 cut(s)	23, 105, 112, 322
Alw26I	GTCTC	3 cut(s)	176, 378, 442
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	191, 199
ApoI	RAATTY	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	186, 203
BccI	CCATC	2 cut(s)	107, 425
BciVI	GTATCC	1 cut(s)	80
BcoDI	GTCTC	3 cut(s)	176, 378, 442
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	80
BisI	GCNGC	2 cut(s)	192, 200
BlsI	GCNGC	2 cut(s)	193, 201
BmsI	GCATC	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	442
BsaJI	CCNNGG	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	417
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	186, 203
BshFI	GGCC	1 cut(s)	315
BsmAI	GTCTC	3 cut(s)	176, 378, 442
BsmBI	CGTCTC	1 cut(s)	176
BsmI	GAATGC	2 cut(s)	34, 193
BsnI	GGCC	1 cut(s)	315
Bso31I	GGTCTC	1 cut(s)	442
Bsp19I	CCATGG	1 cut(s)	152
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	433
BspMAI	CTGCAG	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	152
BssT1I	CCWWGG	1 cut(s)	152
Bst4CI	ACNGT	2 cut(s)	58, 379
Bst6I	CTCTTC	1 cut(s)	260
BstBAI	YACGTR	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	21, 34
BstDEI	CTNAG	2 cut(s)	427, 441
BstDSI	CCRYGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	417
BstMAI	GTCTC	3 cut(s)	176, 378, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 128
BstSFI	CTRYAG	1 cut(s)	200
BstV1I	GCAGC	2 cut(s)	186, 203
BsuI	GTATCC	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	21, 34
CaiI	CAGNNNCTG	1 cut(s)	122
CviAII	CATG	4 cut(s)	153, 173, 195, 364
DdeI	CTNAG	2 cut(s)	427, 441
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	152
Eco147I	AGGCCT	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	152
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	4 cut(s)	156, 176, 198, 367
FaiI	YATR	8 cut(s)	108, 129, 154, 174, 196, 239, 284, 365
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	4 cut(s)	152, 172, 194, 363
Fnu4HI	GCNGC	2 cut(s)	192, 200
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	2 cut(s)	192, 200
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	2 cut(s)	192, 200
HaeIII	GGCC	1 cut(s)	315
Hin1II	CATG	4 cut(s)	156, 176, 198, 367
HincII	GTYRAC	1 cut(s)	305
HindII	GTYRAC	1 cut(s)	305
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	4 cut(s)	230, 349, 367, 445
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	2 cut(s)	118, 442
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	1 cut(s)	305
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	2 cut(s)	58, 379
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	4 cut(s)	95, 191, 202, 289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 128
HpyF3I	CTNAG	2 cut(s)	427, 441
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	4 cut(s)	156, 176, 198, 367
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	4 cut(s)	18, 90, 434, 442
Lsp1109I	GCAGC	2 cut(s)	186, 203
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	3 cut(s)	58, 204, 350
MboII	GAAGA	2 cut(s)	161, 277
MluCI	AATT	3 cut(s)	249, 254, 279
MlyI	GAGTC	2 cut(s)	358, 361
MnlI	CCTC	5 cut(s)	112, 133, 261, 305, 431
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	407
Mva1269I	GAATGC	2 cut(s)	34, 193
MwoI	GCNNNNNNNGC	2 cut(s)	29, 128
NcoI	CCATGG	1 cut(s)	152
NlaIII	CATG	4 cut(s)	156, 176, 198, 367
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	3 cut(s)	58, 204, 350
PceI	AGGCCT	1 cut(s)	315
PctI	GAATGC	2 cut(s)	34, 193
PfeI	GAWTC	2 cut(s)	230, 445
PkrI	GCNGC	2 cut(s)	193, 201
PleI	GAGTC	2 cut(s)	357, 361
PpsI	GAGTC	2 cut(s)	357, 361
Ppu21I	YACGTR	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	204
PstNI	CAGNNNCTG	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	407
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	2 cut(s)	192, 200
SchI	GAGTC	2 cut(s)	358, 361
SetI	ASST	7 cut(s)	25, 70, 107, 114, 144, 324, 438
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	3 cut(s)	249, 254, 279
SseBI	AGGCCT	1 cut(s)	315
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	360
StuI	AGGCCT	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	2 cut(s)	58, 379
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	324
TasI	AATT	3 cut(s)	249, 254, 279
TfiI	GAWTC	2 cut(s)	230, 445
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	3 cut(s)	58, 204, 350
TseI	GCWGC	2 cut(s)	191, 199
Tsp45I	GTSAC	3 cut(s)	58, 204, 350
TspDTI	ATGAA	2 cut(s)	161, 226
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	84
XapI	RAATTY	1 cut(s)	254
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.