Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000066.1

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Reverse (-)

192557 .. 193444

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000066.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggcagatccggcggcccatttatccatgacgcgcctcctccacgagtgcatagcctaccaacgcgccctggatctcaacctcgaccacctcctctcccagctctccgacctcgacaagtacctctccaatctccagaaatcctcccaggtcctcgacatcgtcaagtccgacgccgacatcgtcaagtccgactccgaccacgtctcctccacctgcgacctcgctgaccatgtcaacgccaaggtccgcatgctcgacctcgcccagtcgcaagtcagctccacgctcctccatttggacgcgattgtgcagcaatttctgggtgctcagagcacttttttttttgttcgtcagaggtccaggaagcttaaggctccacaccggaatcggactctagaatccggtcaccagtccggtagctggattccggtcatcggtggcaagagtcaggtcaccggaccgccaccggagtcaagcaaggtctccaatgacttctttctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

168

Amino Acids

18.59

Weight (kDa)

6.69

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	224
AccII	CGCG	3 cut(s)	34, 66, 305
AciI	CCGC	3 cut(s)	14, 250, 464
AclWI	GGATC	2 cut(s)	2, 81
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	3 cut(s)	298, 423, 437
AflII	CTTAAG	1 cut(s)	371
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	3 cut(s)	69, 147, 362
AluBI	AGCT	4 cut(s)	103, 282, 370, 423
AluI	AGCT	4 cut(s)	103, 282, 370, 423
Alw21I	GWGCWC	2 cut(s)	331, 338
Alw26I	GTCTC	2 cut(s)	211, 490
AlwI	GGATC	2 cut(s)	2, 81
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	313
AspLEI	GCGC	2 cut(s)	36, 68
AspS9I	GGNCC	5 cut(s)	16, 151, 247, 360, 461
AsuHPI	GGTGA	2 cut(s)	401, 448
AvaII	GGWCC	4 cut(s)	151, 247, 360, 461
BauI	CACGAG	1 cut(s)	44
Bbv12I	GWGCWC	2 cut(s)	331, 338
BbvI	GCAGC	1 cut(s)	325
BciT130I	CCWGG	3 cut(s)	71, 149, 364
BcoDI	GTCTC	2 cut(s)	211, 490
BfaI	CTAG	1 cut(s)	398
BfrI	CTTAAG	1 cut(s)	371
BfuAI	ACCTGC	1 cut(s)	224
BisI	GCNGC	2 cut(s)	15, 314
BlsI	GCNGC	2 cut(s)	16, 315
Bme1390I	CCNGG	3 cut(s)	71, 149, 364
Bme18I	GGWCC	4 cut(s)	151, 247, 360, 461
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	5 cut(s)	16, 151, 247, 360, 461
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	3 cut(s)	71, 149, 364
BmrI	ACTGGG	1 cut(s)	262
BmuI	ACTGGG	1 cut(s)	262
BpmI	CTGGAG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	490
BsaJI	CCNNGG	3 cut(s)	69, 147, 243
BsaWI	WCCGGW	6 cut(s)	384, 404, 416, 430, 458, 469
BsaXI	ACNNNNNCTCC	6 cut(s)	80, 110, 191, 194, 221, 224
Bsc4I	CCNNNNNNNGG	3 cut(s)	298, 423, 437
Bse1I	ACTGG	2 cut(s)	268, 412
BseBI	CCWGG	3 cut(s)	71, 149, 364
BseDI	CCNNGG	3 cut(s)	69, 147, 243
BseLI	CCNNNNNNNGG	3 cut(s)	298, 423, 437
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	2 cut(s)	268, 412
BseRI	GAGGAG	4 cut(s)	29, 83, 199, 281
BseXI	GCAGC	1 cut(s)	325
BseYI	CCCAGC	1 cut(s)	99
BsgI	GTGCAG	1 cut(s)	332
Bsh1236I	CGCG	3 cut(s)	34, 66, 305
BshFI	GGCC	1 cut(s)	17
BsiHKAI	GWGCWC	2 cut(s)	331, 338
BsiSI	CCGG	7 cut(s)	11, 385, 405, 417, 431, 459, 470
BslI	CCNNNNNNNGG	3 cut(s)	298, 423, 437
BsmAI	GTCTC	2 cut(s)	211, 490
BsmBI	CGTCTC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	17
Bso31I	GGTCTC	1 cut(s)	490
Bsp1286I	GDGCHC	2 cut(s)	331, 338
Bsp143I	GATC	2 cut(s)	7, 73
BspACI	CCGC	3 cut(s)	14, 250, 464
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	343
BspFNI	CGCG	3 cut(s)	34, 66, 305
BspLI	GGNNCC	1 cut(s)	378
BspMI	ACCTGC	1 cut(s)	224
BspPI	GGATC	2 cut(s)	2, 81
BspTI	CTTAAG	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	490
BsrI	ACTGG	2 cut(s)	268, 412
BssECI	CCNNGG	3 cut(s)	69, 147, 243
BssMI	GATC	2 cut(s)	7, 73
BssNI	GRCGYC	1 cut(s)	174
BssSI	CACGAG	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	3 cut(s)	71, 149, 364
BstACI	GRCGYC	1 cut(s)	174
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	330
BstEII	GGTNACC	2 cut(s)	407, 454
BstFNI	CGCG	3 cut(s)	34, 66, 305
BstHHI	GCGC	2 cut(s)	36, 68
BstKTI	GATC	2 cut(s)	10, 76
BstMAI	GTCTC	2 cut(s)	211, 490
BstMBI	GATC	2 cut(s)	7, 73
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	3 cut(s)	71, 149, 364
BstNSI	RCATGY	1 cut(s)	256
BstPI	GGTNACC	2 cut(s)	407, 454
BstSCI	CCNGG	3 cut(s)	69, 147, 362
BstUI	CGCG	3 cut(s)	34, 66, 305
BstV1I	GCAGC	1 cut(s)	325
BstX2I	RGATCY	2 cut(s)	7, 73
BstYI	RGATCY	2 cut(s)	7, 73
BsuRI	GGCC	1 cut(s)	17
BtrI	CACGTC	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	254
CfoI	GCGC	2 cut(s)	36, 68
Cfr13I	GGNCC	5 cut(s)	16, 151, 247, 360, 461
CpoI	CGGWCCG	1 cut(s)	461
CseI	GACGC	3 cut(s)	40, 182, 311
Csp6I	GTAC	1 cut(s)	121
CspI	CGGWCCG	1 cut(s)	461
CviAII	CATG	3 cut(s)	28, 233, 253
CviJI	RGCY	7 cut(s)	17, 56, 103, 282, 370, 377, 423
CviKI_1	RGCY	7 cut(s)	17, 56, 103, 282, 370, 377, 423
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	2 cut(s)	9, 75
DpnII	GATC	2 cut(s)	7, 73
Eco130I	CCWWGG	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	490
Eco47I	GGWCC	4 cut(s)	151, 247, 360, 461
Eco91I	GGTNACC	2 cut(s)	407, 454
EcoO109I	RGGNCCY	1 cut(s)	151
EcoO65I	GGTNACC	2 cut(s)	407, 454
EcoRII	CCWGG	3 cut(s)	69, 147, 362
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	3 cut(s)	31, 236, 256
FaiI	YATR	4 cut(s)	29, 53, 234, 254
FatI	CATG	3 cut(s)	27, 232, 252
Fnu4HI	GCNGC	2 cut(s)	15, 314
Fsp4HI	GCNGC	2 cut(s)	15, 314
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	2 cut(s)	35, 67
GluI	GCNGC	2 cut(s)	15, 314
GsaI	CCCAGC	1 cut(s)	103
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	7 cut(s)	11, 385, 405, 417, 431, 459, 470
HgaI	GACGC	3 cut(s)	40, 182, 311
HhaI	GCGC	2 cut(s)	36, 68
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	3 cut(s)	31, 236, 256
Hin6I	GCGC	2 cut(s)	34, 66
HinP1I	GCGC	2 cut(s)	34, 66
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	7 cut(s)	194, 388, 394, 401, 427, 448, 473
HpaII	CCGG	7 cut(s)	11, 385, 405, 417, 431, 459, 470
HphI	GGTGA	2 cut(s)	401, 448
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	7 cut(s)	109, 172, 193, 199, 333, 357, 393
Hpy188III	TCNNGA	2 cut(s)	136, 398
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	51, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	3 cut(s)	31, 236, 256
HspAI	GCGC	2 cut(s)	34, 66
Kzo9I	GATC	2 cut(s)	7, 73
LmnI	GCTCC	3 cut(s)	287, 294, 382
Lsp1109I	GCAGC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	407, 454
MalI	GATC	2 cut(s)	9, 75
MboI	GATC	2 cut(s)	7, 73
MflI	RGATCY	2 cut(s)	7, 73
MhlI	GDGCHC	2 cut(s)	331, 338
MluCI	AATT	1 cut(s)	317
MlyI	GAGTC	4 cut(s)	188, 388, 457, 482
MmeI	TCCRAC	4 cut(s)	132, 195, 216, 222
MseI	TTAA	1 cut(s)	372
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	7 cut(s)	11, 385, 405, 417, 431, 459, 470
MspR9I	CCNGG	3 cut(s)	71, 149, 364
MvaI	CCWGG	3 cut(s)	71, 149, 364
MvnI	CGCG	3 cut(s)	34, 66, 305
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	7, 73
NlaIII	CATG	3 cut(s)	31, 236, 256
NlaIV	GGNNCC	1 cut(s)	378
NmuCI	GTSAC	2 cut(s)	407, 454
NspI	RCATGY	1 cut(s)	256
PaeI	GCATGC	1 cut(s)	256
PaqCI	CACCTGC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	3 cut(s)	168, 180, 189
PfeI	GAWTC	3 cut(s)	388, 401, 427
PflFI	GACNNNGTC	4 cut(s)	161, 182, 203, 233
PfoI	TCCNGGA	1 cut(s)	362
PkrI	GCNGC	2 cut(s)	16, 315
PleI	GAGTC	4 cut(s)	188, 388, 456, 481
PpsI	GAGTC	4 cut(s)	188, 388, 456, 481
PpuMI	RGGWCCY	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	3 cut(s)	69, 147, 362
PspEI	GGTNACC	2 cut(s)	407, 454
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	3 cut(s)	69, 147, 362
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	5 cut(s)	16, 151, 247, 360, 461
PspPPI	RGGWCCY	1 cut(s)	151
PsuI	RGATCY	2 cut(s)	7, 73
PsyI	GACNNNGTC	4 cut(s)	161, 182, 203, 233
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
Rsr2I	CGGWCCG	1 cut(s)	461
RsrII	CGGWCCG	1 cut(s)	461
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	2 cut(s)	15, 314
Sau3AI	GATC	2 cut(s)	7, 73
Sau96I	GGNCC	5 cut(s)	16, 151, 247, 360, 461
SchI	GAGTC	4 cut(s)	188, 388, 457, 482
ScrFI	CCNGG	3 cut(s)	71, 149, 364
SduI	GDGCHC	2 cut(s)	331, 338
SinI	GGWCC	4 cut(s)	151, 247, 360, 461
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SphI	GCATGC	1 cut(s)	256
Sse9I	AATT	1 cut(s)	317
SsiI	CCGC	3 cut(s)	14, 250, 464
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	3 cut(s)	69, 147, 362
StyI	CCWWGG	1 cut(s)	243
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	4 cut(s)	84, 114, 156, 258
TasI	AATT	1 cut(s)	317
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	3 cut(s)	388, 401, 427
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseFI	GTSAC	2 cut(s)	407, 454
TseI	GCWGC	1 cut(s)	313
Tsp45I	GTSAC	2 cut(s)	407, 454
Tth111I	GACNNNGTC	4 cut(s)	161, 182, 203, 233
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	4 cut(s)	151, 247, 360, 461
XbaI	TCTAGA	1 cut(s)	397
XceI	RCATGY	1 cut(s)	256
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.