Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033476.1

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 913

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033476.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

cgacctcgccgaccacgtcagcgccaaggtccgcgagctcgacctcgcccagtcgcgcgtcaactccacgctcctccggcttgacgcgattgtggagcggaccaactgcattgacggcgttaagcaggcgcttgacggccaggactacgagtctgcggcgaagttcgtgcagaggtttatgcagattgaatcggagtatagggattcgggttcggagcagagggatcagctcatggagtcgaagaagcagctcgagtcgattgtgaagaagaagctatctgcagccgtggaccagagggaccatcccaatgtgctgaggttcattaggctctacacgccgttggggatagaagaagagggtctacaggcgtatgtgagttacttgaggaaggtgattgggatgagatcgaggctcgagttcgagcatttgatggagttgatggagcagaagaacaatcagaaccagcaggttaattttgtggggtgtttgaccaatttgtttaaggacattgtgttggcaattgaagagaatgacgagattttgagggggctctgtggggaagatgggattgtttatgctatttgtgagcttcaagaggagtgtgattcgagggggactttgattttgaagaagtacatggagtataggagattgccaaagttgtcatcggagataaatgcacagaatatgaatttgcttgatgttggtgttgctggtgttgggtctgaggggcctgacccgagagaggttgagcttatattggaggagatactgtctttgatgcagttgggtgaggattatactgaattcatggtgtctaagatcaagggcttgagtaatgtggatccagatttagcgccgagagcaaccaagtcttttaggagtggaagttttagcaaagtggttcagga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

303

Amino Acids

34.39

Weight (kDa)

4.92

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	458
AccBSI	CCGCTC	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	362
AccII	CGCG	4 cut(s)	34, 56, 58, 87
AciI	CCGC	3 cut(s)	32, 98, 156
AclWI	GGATC	3 cut(s)	232, 840, 853
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	2 cut(s)	692, 807
AfaI	GTAC	1 cut(s)	636
AfiI	CCNNNNNNNGG	1 cut(s)	746
AgsI	TTSAA	4 cut(s)	189, 525, 594, 629
AhdI	GACNNNNNGTC	1 cut(s)	149
AjiI	CACGTC	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	6 cut(s)	38, 230, 251, 275, 590, 755
AluI	AGCT	6 cut(s)	38, 230, 251, 275, 590, 755
Alw21I	GWGCWC	1 cut(s)	40
AlwI	GGATC	3 cut(s)	232, 840, 853
Ama87I	CYCGRG	3 cut(s)	252, 414, 740
AoxI	GGCC	2 cut(s)	137, 732
ApeKI	GCWGC	2 cut(s)	248, 282
ApoI	RAATTY	2 cut(s)	692, 807
ArsI	GACNNNNNNTTYG	2 cut(s)	608, 640
AspLEI	GCGC	4 cut(s)	24, 58, 131, 860
AspS9I	GGNCC	5 cut(s)	29, 100, 290, 299, 732
AsuHPI	GGTGA	2 cut(s)	404, 804
AvaI	CYCGRG	3 cut(s)	252, 414, 740
AvaII	GGWCC	4 cut(s)	29, 100, 290, 299
BamHI	GGATCC	1 cut(s)	845
BanII	GRGCYC	2 cut(s)	40, 553
BarI	GAAGNNNNNNTAC	2 cut(s)	346, 378
Bbv12I	GWGCWC	1 cut(s)	40
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	260, 294
BccI	CCATC	4 cut(s)	310, 425, 434, 558
BceAI	ACGGC	4 cut(s)	131, 152, 270, 323
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BciT130I	CCWGG	1 cut(s)	141
BfmI	CTRYAG	2 cut(s)	280, 363
BfoI	RGCGCY	3 cut(s)	25, 132, 861
BfuAI	ACCTGC	1 cut(s)	458
BisI	GCNGC	3 cut(s)	157, 249, 283
BlsI	GCNGC	3 cut(s)	158, 250, 284
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	4 cut(s)	29, 100, 290, 299
BmeRI	GACNNNNNGTC	1 cut(s)	149
BmeT110I	CYCGRG	3 cut(s)	252, 414, 740
BmgBI	CACGTC	1 cut(s)	17
BmgT120I	GGNCC	5 cut(s)	29, 100, 290, 299, 732
BmiI	GGNNCC	3 cut(s)	300, 733, 847
BmrFI	CCNGG	1 cut(s)	141
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	772
BmuI	ACTGGG	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	2 cut(s)	404, 854
BsaJI	CCNNGG	2 cut(s)	25, 286
BsaXI	ACNNNNNCTCC	4 cut(s)	759, 789, 875, 905
Bsc4I	CCNNNNNNNGG	1 cut(s)	746
Bse1I	ACTGG	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	25, 286
BseGI	GGATG	2 cut(s)	302, 406
BseLI	CCNNNNNNNGG	1 cut(s)	746
BseMII	CTCAG	2 cut(s)	306, 718
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	3 cut(s)	63, 612, 780
BseXI	GCAGC	2 cut(s)	260, 294
BsgI	GTGCAG	1 cut(s)	189
Bsh1236I	CGCG	4 cut(s)	34, 56, 58, 87
BshFI	GGCC	2 cut(s)	139, 734
BsiHKAI	GWGCWC	1 cut(s)	40
BsiHKCI	CYCGRG	3 cut(s)	252, 414, 740
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	2 cut(s)	312, 629
BslI	CCNNNNNNNGG	1 cut(s)	746
BsmFI	GGGAC	2 cut(s)	312, 629
BsnI	GGCC	2 cut(s)	139, 734
BsoBI	CYCGRG	3 cut(s)	252, 414, 740
Bsp1286I	GDGCHC	2 cut(s)	40, 553
Bsp143I	GATC	4 cut(s)	224, 405, 823, 845
BspACI	CCGC	3 cut(s)	32, 98, 156
BspANI	GGCC	2 cut(s)	139, 734
BspCNI	CTCAG	2 cut(s)	307, 719
BspFNI	CGCG	4 cut(s)	34, 56, 58, 87
BspLI	GGNNCC	3 cut(s)	300, 733, 847
BspMAI	CTGCAG	1 cut(s)	284
BspMI	ACCTGC	1 cut(s)	458
BspPI	GGATC	3 cut(s)	232, 840, 853
BsrBI	CCGCTC	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	25, 286
BssMI	GATC	4 cut(s)	224, 405, 823, 845
BssT1I	CCWWGG	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	775
Bst6I	CTCTTC	2 cut(s)	349, 520
BstC8I	GCNNGC	2 cut(s)	36, 127
BstDEI	CTNAG	3 cut(s)	315, 727, 820
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	2 cut(s)	302, 406
BstFNI	CGCG	4 cut(s)	34, 56, 58, 87
BstH2I	RGCGCY	3 cut(s)	25, 132, 861
BstHHI	GCGC	4 cut(s)	24, 58, 131, 860
BstKTI	GATC	4 cut(s)	227, 408, 826, 848
BstMBI	GATC	4 cut(s)	224, 405, 823, 845
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 115, 335, 864
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	2 cut(s)	280, 363
BstUI	CGCG	4 cut(s)	34, 56, 58, 87
BstV1I	GCAGC	2 cut(s)	260, 294
BstX2I	RGATCY	1 cut(s)	845
BstYI	RGATCY	1 cut(s)	845
BsuRI	GGCC	2 cut(s)	139, 734
BtgI	CCRYGG	1 cut(s)	286
BtrI	CACGTC	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	302, 406
BveI	ACCTGC	1 cut(s)	458
Cac8I	GCNNGC	2 cut(s)	36, 127
CfoI	GCGC	4 cut(s)	24, 58, 131, 860
Cfr13I	GGNCC	5 cut(s)	29, 100, 290, 299, 732
CseI	GACGC	2 cut(s)	47, 93
Csp6I	GTAC	1 cut(s)	635
CviAII	CATG	3 cut(s)	233, 638, 812
CviQI	GTAC	1 cut(s)	635
DdeI	CTNAG	3 cut(s)	315, 727, 820
DpnI	GATC	4 cut(s)	226, 407, 825, 847
DpnII	GATC	4 cut(s)	224, 405, 823, 845
DriI	GACNNNNNGTC	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	137
Eam1104I	CTCTTC	2 cut(s)	349, 520
Eam1105I	GACNNNNNGTC	1 cut(s)	149
EarI	CTCTTC	2 cut(s)	349, 520
Ecl136II	GAGCTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	25
Eco24I	GRGCYC	2 cut(s)	40, 553
Eco47I	GGWCC	4 cut(s)	29, 100, 290, 299
Eco53kI	GAGCTC	1 cut(s)	38
Eco88I	CYCGRG	3 cut(s)	252, 414, 740
EcoICRI	GAGCTC	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	732
EcoRI	GAATTC	1 cut(s)	807
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	25
EcoT38I	GRGCYC	2 cut(s)	40, 553
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	3 cut(s)	236, 641, 815
FaqI	GGGAC	2 cut(s)	312, 629
FatI	CATG	3 cut(s)	232, 637, 811
FblI	GTMKAC	1 cut(s)	362
Fnu4HI	GCNGC	3 cut(s)	157, 249, 283
FokI	GGATG	2 cut(s)	289, 413
FriOI	GRGCYC	2 cut(s)	40, 553
Fsp4HI	GCNGC	3 cut(s)	157, 249, 283
GlaI	GCGC	4 cut(s)	23, 57, 130, 859
GluI	GCNGC	3 cut(s)	157, 249, 283
HaeII	RGCGCY	3 cut(s)	25, 132, 861
HaeIII	GGCC	2 cut(s)	139, 734
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	2 cut(s)	47, 93
HhaI	GCGC	4 cut(s)	24, 58, 131, 860
Hin1II	CATG	3 cut(s)	236, 641, 815
Hin6I	GCGC	4 cut(s)	22, 56, 129, 858
HinP1I	GCGC	4 cut(s)	22, 56, 129, 858
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HinfI	GANTC	6 cut(s)	150, 189, 204, 237, 255, 606
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	2 cut(s)	404, 804
Hpy166II	GTNNAC	3 cut(s)	62, 290, 363
Hpy188I	TCNGA	5 cut(s)	194, 215, 460, 671, 728
Hpy188III	TCNNGA	3 cut(s)	594, 849, 909
Hpy8I	GTNNAC	3 cut(s)	62, 290, 363
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	1 cut(s)	775
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	6 cut(s)	109, 170, 182, 282, 681, 785
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 115, 335, 864
HpyF3I	CTNAG	3 cut(s)	315, 727, 820
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	3 cut(s)	236, 641, 815
HspAI	GCGC	4 cut(s)	22, 56, 129, 858
Kzo9I	GATC	4 cut(s)	224, 405, 823, 845
LmnI	GCTCC	4 cut(s)	76, 95, 215, 443
Lsp1109I	GCAGC	2 cut(s)	260, 294
LweI	GCATC	1 cut(s)	772
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	378
MalI	GATC	4 cut(s)	226, 407, 825, 847
MbiI	CCGCTC	1 cut(s)	98
MboI	GATC	4 cut(s)	224, 405, 823, 845
MboII	GAAGA	9 cut(s)	254, 278, 281, 363, 366, 461, 537, 573, 641
MfeI	CAATTG	1 cut(s)	520
MflI	RGATCY	1 cut(s)	845
MhlI	GDGCHC	2 cut(s)	40, 553
MluCI	AATT	5 cut(s)	473, 494, 520, 692, 807
MlyI	GAGTC	3 cut(s)	159, 246, 264
MseI	TTAA	3 cut(s)	121, 472, 502
MslI	CAYNNNNRTG	1 cut(s)	307
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	141
MunI	CAATTG	1 cut(s)	520
MvaI	CCWGG	1 cut(s)	141
MvnI	CGCG	4 cut(s)	34, 56, 58, 87
MwoI	GCNNNNNNNGC	4 cut(s)	77, 115, 335, 864
NdeII	GATC	4 cut(s)	224, 405, 823, 845
NlaIII	CATG	3 cut(s)	236, 641, 815
NlaIV	GGNNCC	3 cut(s)	300, 733, 847
NmeAIII	GCCGAG	1 cut(s)	886
PaeR7I	CTCGAG	2 cut(s)	252, 414
PcsI	WCGNNNNNNNCGW	1 cut(s)	13
PfeI	GAWTC	3 cut(s)	189, 204, 606
PflFI	GACNNNGTC	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	158, 250, 284
PleI	GAGTC	3 cut(s)	158, 245, 263
PpsI	GAGTC	3 cut(s)	158, 245, 263
Psp124BI	GAGCTC	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	3 cut(s)	300, 733, 847
PspPI	GGNCC	5 cut(s)	29, 100, 290, 299, 732
PspXI	VCTCGAGB	2 cut(s)	252, 414
PstI	CTGCAG	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	845
PsyI	GACNNNGTC	1 cut(s)	15
RsaI	GTAC	1 cut(s)	636
RsaNI	GTAC	1 cut(s)	635
RseI	CAYNNNNRTG	1 cut(s)	307
SacI	GAGCTC	1 cut(s)	40
SaqAI	TTAA	3 cut(s)	121, 472, 502
SatI	GCNGC	3 cut(s)	157, 249, 283
Sau3AI	GATC	4 cut(s)	224, 405, 823, 845
Sau96I	GGNCC	5 cut(s)	29, 100, 290, 299, 732
SchI	GAGTC	3 cut(s)	159, 246, 264
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	2 cut(s)	40, 553
SfaNI	GCATC	1 cut(s)	772
SfcI	CTRYAG	2 cut(s)	280, 363
Sfr274I	CTCGAG	2 cut(s)	252, 414
SinI	GGWCC	4 cut(s)	29, 100, 290, 299
SlaI	CTCGAG	2 cut(s)	252, 414
SmiMI	CAYNNNNRTG	1 cut(s)	307
SmlI	CTYRAG	4 cut(s)	252, 383, 414, 833
SmoI	CTYRAG	4 cut(s)	252, 383, 414, 833
Sse9I	AATT	5 cut(s)	473, 494, 520, 692, 807
SsiI	CCGC	3 cut(s)	32, 98, 156
SstI	GAGCTC	1 cut(s)	40
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	775
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	8 cut(s)	40, 240, 253, 258, 408, 415, 421, 609
TasI	AATT	5 cut(s)	473, 494, 520, 692, 807
TatI	WGTACW	1 cut(s)	634
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	189, 204, 606
Tru1I	TTAA	3 cut(s)	121, 472, 502
Tru9I	TTAA	3 cut(s)	121, 472, 502
TseI	GCWGC	2 cut(s)	248, 282
TspDTI	ATGAA	3 cut(s)	311, 705, 800
Tth111I	GACNNNGTC	1 cut(s)	15
VpaK11BI	GGWCC	4 cut(s)	29, 100, 290, 299
XapI	RAATTY	2 cut(s)	692, 807
XhoI	CTCGAG	2 cut(s)	252, 414
XmiI	GTMKAC	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.