Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Forward (+)

26412679 .. 26416106

Gene Structure 3428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG139600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2208 bp

ATGGAGTCGTCGGATCCACCACCGTCGATCAACTTTGGCACCGCAGAGGCTCTCGACCACATCCGTAGCCTCACCGACGTCGGAGCCATGACGCGCCTCCTCCACGAGTGCATAGCCTACCAACGCGCCCTGGATCTCAACCTCGATCACCTCCTCTCCCAGCGCTCCGACCTCGACAAGCACCTCTCCAATCTCCAGAAATCCTCCCAGGTCCTCGACATCGTCAAGTCCGACGCCGACCACGTCCTCTCCAACGTCTCCTCCACCTGCGACCTCGCCGACCACGTCAGCGCCAAGGTCCGCGAGCTCGACCTCGCCCAGTCGCGCGTCAACTCCACGCTCCTCCGGCTCGACGCGATTGTGGAGCGGACCAACTGCATTGACGGCGTTAAGCAGGCGCTTGACGGCCAGGACTACGAGTCTGCGGCGAAGTTCGTGCAGAGGTTTATGCAGATTGAGTCGGAGTATAGGGATTCGGGTTCGGAGCACAGGGATCAGCTCATGGAGTCGAAGAAGCAGCTCGAGTCGATTGTGAAGAAGAAGCTATCTGCAGCCGTGGACCAGAGGGACCATCCCAATGTGCTGAGGTTCATTAGGCTCTACACGCCGTTGGGGATAGAAGAAGAGGGTCTACAGGCGTATGTGAGTTACTTGAGGAAGGTGATTGGGATGAGATCGAGGCTCGAGTTCGAGCATTTGATGGAGTTGATGGAGCAGAAGAACAATCAGAACCAGCAGGTTAATTTTGTGGGGTGTTTGACCAATTTGTTTAAGGACATTGTGTTGGCAATTGAAGAGAATGACGAGATTTTGAGGGGGCTCTGTGGGGAAGATGGGATTGTTTATGCTATTTGTGAGCTTCAAGAGGAGTGTGATTCGAGGGGGACTTTGATTTTGAAGAAGTACATGGAGTATAGGAGATTGCCAAAGTTGTCATCGGAGATAAATGCACAGAATATGAATTTGCTTGATGTTGGTGTTGCTGGTGTTGGGTCTGAGGGGCCTGACCCGAGAGAGGTTGAGCTTATATTGGAGGAGATACTGTCTTTGATGCAGTTGGGTGAGGATTATACTGAATTCATGGTGTCTAAGATCAAGGGCTTGAGTAATGTGGATCCGGATTTAGCACCGAGAGCAACCAAGTCTTTTAGGAGTGGAAGTTTTAGCAAAGTGGTTCAGGACATTACTGGGTTTTATGTCATATTAGAGGGCTTCTTTATGGTTGAGAATGTGAGGAAGGCTATAAGGATTGATGAGCATGTGCCTGACAGTCTTACCACTTCTATGGTGGATGATGTTTTCTATGTTCTGCAGAGTTGCTTGCGAAGGGCGATATCCACTTTGAATATCAGCTCAGTGATTGCTGTGTTGAGTGGTGCCAGTAGTTTGTTGAGTAATGAGTACCATGAAGCTTTGCAACACAAGATGAGAGAGCCCAATCTTGGTGCGAAGCTGTTCTTGGGTGGTGTTGGTGTTCAAAAGACTGGCACAGAGATCGCTACGGTTTTGAATAATATGGATGTGAGTAGTGAGTATGTGCTCAAACTGAAACACGAAATTGAGGAGCAATGTTTGGAAGTATTTCCTGCACCGGCTGATAGAGAAAAAGTTAAGTCTTGTTTGTCCGAGTTAGGGGATATGAGCAATACATTCAAGCAAGCTTTGAATGCTGGCTTGGAGCAACTTGTGGCAACTGTGACACCACGTATCCGTCCAGTGCTTGATAATGTTGCAACCATCAGCTATGAGCTATCAGAGGCTGAATATGCGGACAATGAGGTTAATGACCCATGGGTTCAAGGGCTTCTTCATGCTGTTGAGACGAATGCAGCATGGCTGCAGTCACTAATGACTGCCAACAACTACGATTCGTTCATACATTTGATAATTGAATTCCTTGTGAAGAGGCTTGAAGTAATTATGATGCAGAAAAGATTTAGTCAACTTGGAGGCCTTCAGCTCGACAGAGATTGTAGGGCATTGGTGAGCCACTTTTCTAGCATGACTCAAAGAACTGTTAGAGACAAGTTTGCTCGGCTCACTCAAATGGCAACCATCCTCAACTTAGAAAAGGTCTCTGAGATTCTGGATTTCTGGGGTGAGAATTCAGGACCTATGACATGGAGACTGACACCAGCCGAGGTCAGGCGAGTTTTGGGTCTGAGAGTTGATTTTAAATCCGAAGCAATTGCGGCCCTCAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

735

Amino Acids

82.66

Weight (kDa)

5.1

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG4_N	PF20663	62 - 155	3.9e-28	Conserved oligomeric Golgi complex subunit 4, N-terminal
COG4_m	PF08318	196 - 476	2.4e-75	COG4 transport protein, middle alpha-helical bundle
COG4_C	PF20662	501 - 717	3.1e-63	Conserved oligomeric Golgi complex subunit 4, C-terminal
RINT1_TIP1	PF04437	553 - 692	1.6e-08	RINT-1/TIP-1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	275
AatII	GACGTC	1 cut(s)	81
Acc36I	ACCTGC	2 cut(s)	275, 727
AccB1I	GGYRCC	2 cut(s)	38, 1376
AccBSI	CCGCTC	1 cut(s)	367
AccI	GTMKAC	1 cut(s)	631
AccII	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
AccIII	TCCGGA	1 cut(s)	1117
AciI	CCGC	6 cut(s)	42, 301, 367, 425, 1769, 2192
AclWI	GGATC	6 cut(s)	8, 21, 141, 501, 1109, 1122
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	4 cut(s)	961, 1076, 1892, 2104
AcuI	CTGAAG	1 cut(s)	1940
AcyI	GRCGYC	2 cut(s)	78, 234
AfaI	GTAC	2 cut(s)	905, 1403
AfeI	AGCGCT	1 cut(s)	164
AfiI	CCNNNNNNNGG	4 cut(s)	1015, 1442, 1632, 2145
AhdI	GACNNNNNGTC	1 cut(s)	418
AjiI	CACGTC	2 cut(s)	244, 286
AjnI	CCWGG	3 cut(s)	129, 207, 408
AjuI	GAANNNNNNNTTGG	4 cut(s)	1442, 1474, 1658, 1690
Alw21I	GWGCWC	3 cut(s)	309, 489, 1542
Alw26I	GTCTC	5 cut(s)	262, 1814, 2016, 2080, 2119
AlwI	GGATC	6 cut(s)	8, 21, 141, 501, 1109, 1122
AlwNI	CAGNNNCTG	1 cut(s)	1760
Ama87I	CYCGRG	3 cut(s)	521, 683, 1009
Aor13HI	TCCGGA	1 cut(s)	1117
Aor51HI	AGCGCT	1 cut(s)	164
AoxI	GGCC	4 cut(s)	406, 1001, 1951, 2193
ApeKI	GCWGC	4 cut(s)	517, 551, 1829, 1837
ApoI	RAATTY	4 cut(s)	961, 1076, 1892, 2104
ArsI	GACNNNNNNTTYG	2 cut(s)	877, 909
Asp700I	GAANNNNTTC	2 cut(s)	1454, 1581
AspLEI	GCGC	6 cut(s)	96, 128, 165, 293, 327, 400
AspS9I	GGNCC	8 cut(s)	211, 298, 369, 559, 568, 1001, 2111, 2194
AsuHPI	GGTGA	6 cut(s)	64, 140, 673, 1073, 1996, 2111
AvaI	CYCGRG	3 cut(s)	521, 683, 1009
AvaII	GGWCC	6 cut(s)	211, 298, 369, 559, 568, 2111
BamHI	GGATCC	2 cut(s)	13, 1114
BanI	GGYRCC	2 cut(s)	38, 1376
BanII	GRGCYC	3 cut(s)	309, 822, 1437
BarI	GAAGNNNNNNTAC	2 cut(s)	615, 647
BauI	CACGAG	1 cut(s)	104
Bbv12I	GWGCWC	3 cut(s)	309, 489, 1542
BbvCI	CCTCAGC	1 cut(s)	584
BbvI	GCAGC	4 cut(s)	529, 563, 1824, 1841
BccI	CCATC	6 cut(s)	579, 694, 703, 827, 1745, 2063
BceAI	ACGGC	4 cut(s)	400, 421, 539, 592
BcgI	CGANNNNNNTGC	6 cut(s)	418, 452, 1477, 1511, 2171, 2205
BciT130I	CCWGG	3 cut(s)	131, 209, 410
BciVI	GTATCC	1 cut(s)	1718
BcoDI	GTCTC	5 cut(s)	262, 1814, 2016, 2080, 2119
BfaI	CTAG	1 cut(s)	1998
BfmI	CTRYAG	4 cut(s)	549, 632, 1310, 1838
BfoI	RGCGCY	3 cut(s)	166, 294, 401
BfuAI	ACCTGC	2 cut(s)	275, 727
BfuI	GTATCC	1 cut(s)	1718
BisI	GCNGC	6 cut(s)	426, 518, 552, 1830, 1838, 2193
BlsI	GCNGC	6 cut(s)	427, 519, 553, 1831, 1839, 2194
Bme1390I	CCNGG	3 cut(s)	131, 209, 410
Bme18I	GGWCC	6 cut(s)	211, 298, 369, 559, 568, 2111
BmeRI	GACNNNNNGTC	1 cut(s)	418
BmeT110I	CYCGRG	3 cut(s)	521, 683, 1009
BmgBI	CACGTC	2 cut(s)	244, 286
BmgT120I	GGNCC	8 cut(s)	211, 298, 369, 559, 568, 1001, 2111, 2194
BmiI	GGNNCC	7 cut(s)	15, 40, 85, 569, 1002, 1116, 1378
BmrFI	CCNGG	3 cut(s)	131, 209, 410
BmrI	ACTGGG	2 cut(s)	313, 1197
BmsI	GCATC	2 cut(s)	1041, 1914
BmuI	ACTGGG	2 cut(s)	313, 1197
BpmI	CTGGAG	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	584
BpuEI	CTTGAG	3 cut(s)	673, 1123, 2183
BsaAI	YACGTR	1 cut(s)	1706
BsaHI	GRCGYC	2 cut(s)	78, 234
BsaI	GGTCTC	1 cut(s)	2080
BsaJI	CCNNGG	6 cut(s)	129, 207, 294, 555, 1790, 2139
BsaWI	WCCGGW	1 cut(s)	1117
Bsc4I	CCNNNNNNNGG	4 cut(s)	1015, 1442, 1632, 2145
Bse118I	RCCGGY	1 cut(s)	1591
Bse1I	ACTGG	5 cut(s)	319, 1192, 1380, 1489, 1715
Bse3DI	GCAATG	1 cut(s)	1574
BseAI	TCCGGA	1 cut(s)	1117
BseBI	CCWGG	3 cut(s)	131, 209, 410
BseDI	CCNNGG	6 cut(s)	129, 207, 294, 555, 1790, 2139
BseGI	GGATG	6 cut(s)	60, 571, 675, 1297, 1525, 2055
BseLI	CCNNNNNNNGG	4 cut(s)	1015, 1442, 1632, 2145
BseMI	GCAATG	1 cut(s)	1574
BseMII	CTCAG	5 cut(s)	575, 987, 1368, 2070, 2153
BseNI	ACTGG	5 cut(s)	319, 1192, 1380, 1489, 1715
BseRI	GAGGAG	7 cut(s)	89, 143, 250, 332, 881, 1049, 1577
BseXI	GCAGC	4 cut(s)	529, 563, 1824, 1841
BseYI	CCCAGC	1 cut(s)	159
BsgI	GTGCAG	2 cut(s)	458, 1572
Bsh1236I	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
BshFI	GGCC	4 cut(s)	408, 1003, 1953, 2195
BshNI	GGYRCC	2 cut(s)	38, 1376
BsiHKAI	GWGCWC	3 cut(s)	309, 489, 1542
BsiHKCI	CYCGRG	3 cut(s)	521, 683, 1009
BsiSI	CCGG	3 cut(s)	346, 1118, 1592
BslFI	GGGAC	2 cut(s)	581, 898
BslI	CCNNNNNNNGG	4 cut(s)	1015, 1442, 1632, 2145
BsmAI	GTCTC	5 cut(s)	262, 1814, 2016, 2080, 2119
BsmBI	CGTCTC	2 cut(s)	262, 1814
BsmFI	GGGAC	2 cut(s)	581, 898
BsmI	GAATGC	2 cut(s)	1672, 1831
BsnI	GGCC	4 cut(s)	408, 1003, 1953, 2195
Bso31I	GGTCTC	1 cut(s)	2080
BsoBI	CYCGRG	3 cut(s)	521, 683, 1009
Bsp1286I	GDGCHC	5 cut(s)	309, 489, 822, 1437, 1542
Bsp13I	TCCGGA	1 cut(s)	1117
Bsp143I	GATC	9 cut(s)	13, 27, 133, 145, 493, 674, 1092, 1114, 1494
Bsp19I	CCATGG	1 cut(s)	1790
BspACI	CCGC	6 cut(s)	42, 301, 367, 425, 1769, 2192
BspANI	GGCC	4 cut(s)	408, 1003, 1953, 2195
BspCNI	CTCAG	5 cut(s)	576, 988, 1367, 2071, 2154
BspEI	TCCGGA	1 cut(s)	1117
BspFNI	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
BspLI	GGNNCC	7 cut(s)	15, 40, 85, 569, 1002, 1116, 1378
BspMAI	CTGCAG	3 cut(s)	553, 1314, 1842
BspMI	ACCTGC	2 cut(s)	275, 727
BspPI	GGATC	6 cut(s)	8, 21, 141, 501, 1109, 1122
BspT107I	GGYRCC	2 cut(s)	38, 1376
BspTNI	GGTCTC	1 cut(s)	2080
BsrBI	CCGCTC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	1574
BsrFI	RCCGGY	1 cut(s)	1591
BsrI	ACTGG	5 cut(s)	319, 1192, 1380, 1489, 1715
BssAI	RCCGGY	1 cut(s)	1591
BssECI	CCNNGG	6 cut(s)	129, 207, 294, 555, 1790, 2139
BssMI	GATC	9 cut(s)	13, 27, 133, 145, 493, 674, 1092, 1114, 1494
BssNI	GRCGYC	2 cut(s)	78, 234
BssSI	CACGAG	1 cut(s)	104
BssT1I	CCWWGG	2 cut(s)	294, 1790
Bst2BI	CACGAG	1 cut(s)	104
Bst2UI	CCWGG	3 cut(s)	131, 209, 410
Bst4CI	ACNGT	6 cut(s)	24, 1044, 1271, 1504, 1696, 2017
Bst6I	CTCTTC	3 cut(s)	618, 789, 1898
BstACI	GRCGYC	2 cut(s)	78, 234
BstBAI	YACGTR	1 cut(s)	1706
BstC8I	GCNNGC	5 cut(s)	305, 396, 1322, 1659, 1672
BstDEI	CTNAG	7 cut(s)	584, 996, 1089, 1354, 2065, 2079, 2162
BstDSI	CCRYGG	2 cut(s)	555, 1790
BstF5I	GGATG	6 cut(s)	60, 571, 675, 1297, 1525, 2055
BstFNI	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
BstH2I	RGCGCY	3 cut(s)	166, 294, 401
BstHHI	GCGC	6 cut(s)	96, 128, 165, 293, 327, 400
BstKTI	GATC	9 cut(s)	16, 30, 136, 148, 496, 677, 1095, 1117, 1497
BstMAI	GTCTC	5 cut(s)	262, 1814, 2016, 2080, 2119
BstMBI	GATC	9 cut(s)	13, 27, 133, 145, 493, 674, 1092, 1114, 1494
BstMWI	GCNNNNNNNGC	7 cut(s)	346, 384, 604, 1133, 1667, 1766, 2192
BstNI	CCWGG	3 cut(s)	131, 209, 410
BstNSI	RCATGY	1 cut(s)	1262
BstSCI	CCNGG	3 cut(s)	129, 207, 408
BstSFI	CTRYAG	4 cut(s)	549, 632, 1310, 1838
BstUI	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
BstV1I	GCAGC	4 cut(s)	529, 563, 1824, 1841
BstX2I	RGATCY	3 cut(s)	13, 133, 1114
BstXI	CCANNNNNNTGG	1 cut(s)	1285
BstYI	RGATCY	3 cut(s)	13, 133, 1114
BsuI	GTATCC	1 cut(s)	1718
BsuRI	GGCC	4 cut(s)	408, 1003, 1953, 2195
BtgI	CCRYGG	2 cut(s)	555, 1790
BtrI	CACGTC	2 cut(s)	244, 286
BtsCI	GGATG	6 cut(s)	60, 571, 675, 1297, 1525, 2055
BtsIMutI	CAGTG	2 cut(s)	1362, 1722
BveI	ACCTGC	2 cut(s)	275, 727
Cac8I	GCNNGC	5 cut(s)	305, 396, 1322, 1659, 1672
CaiI	CAGNNNCTG	1 cut(s)	1760
CfoI	GCGC	6 cut(s)	96, 128, 165, 293, 327, 400
Cfr10I	RCCGGY	1 cut(s)	1591
Cfr13I	GGNCC	8 cut(s)	211, 298, 369, 559, 568, 1001, 2111, 2194
CseI	GACGC	4 cut(s)	100, 242, 316, 362
Csp6I	GTAC	2 cut(s)	904, 1402
CviQI	GTAC	2 cut(s)	904, 1402
DdeI	CTNAG	7 cut(s)	584, 996, 1089, 1354, 2065, 2079, 2162
DpnI	GATC	9 cut(s)	15, 29, 135, 147, 495, 676, 1094, 1116, 1496
DpnII	GATC	9 cut(s)	13, 27, 133, 145, 493, 674, 1092, 1114, 1494
DraI	TTTAAA	1 cut(s)	2176
DriI	GACNNNNNGTC	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	3 cut(s)	618, 789, 1898
Eam1105I	GACNNNNNGTC	1 cut(s)	418
EarI	CTCTTC	3 cut(s)	618, 789, 1898
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	2 cut(s)	294, 1790
Eco147I	AGGCCT	1 cut(s)	1953
Eco24I	GRGCYC	3 cut(s)	309, 822, 1437
Eco31I	GGTCTC	1 cut(s)	2080
Eco32I	GATATC	1 cut(s)	1335
Eco47I	GGWCC	6 cut(s)	211, 298, 369, 559, 568, 2111
Eco47III	AGCGCT	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	1940
Eco88I	CYCGRG	3 cut(s)	521, 683, 1009
EcoICRI	GAGCTC	1 cut(s)	307
EcoO109I	RGGNCCY	3 cut(s)	211, 1001, 2111
EcoRI	GAATTC	3 cut(s)	1076, 1892, 2104
EcoRII	CCWGG	3 cut(s)	129, 207, 408
EcoRV	GATATC	1 cut(s)	1335
EcoT14I	CCWWGG	2 cut(s)	294, 1790
EcoT38I	GRGCYC	3 cut(s)	309, 822, 1437
ErhI	CCWWGG	2 cut(s)	294, 1790
Esp3I	CGTCTC	2 cut(s)	262, 1814
FalI	AAGNNNNNCTT	4 cut(s)	1442, 1474, 1791, 1823
FaqI	GGGAC	2 cut(s)	581, 898
FblI	GTMKAC	1 cut(s)	631
Fnu4HI	GCNGC	6 cut(s)	426, 518, 552, 1830, 1838, 2193
FokI	GGATG	6 cut(s)	47, 558, 682, 1304, 1532, 2042
FriOI	GRGCYC	3 cut(s)	309, 822, 1437
Fsp4HI	GCNGC	6 cut(s)	426, 518, 552, 1830, 1838, 2193
FspBI	CTAG	1 cut(s)	1998
GlaI	GCGC	6 cut(s)	95, 127, 164, 292, 326, 399
GluI	GCNGC	6 cut(s)	426, 518, 552, 1830, 1838, 2193
GsaI	CCCAGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	179
HaeII	RGCGCY	3 cut(s)	166, 294, 401
HaeIII	GGCC	4 cut(s)	408, 1003, 1953, 2195
HapII	CCGG	3 cut(s)	346, 1118, 1592
HgaI	GACGC	4 cut(s)	100, 242, 316, 362
HhaI	GCGC	6 cut(s)	96, 128, 165, 293, 327, 400
Hin1I	GRCGYC	2 cut(s)	78, 234
Hin6I	GCGC	6 cut(s)	94, 126, 163, 291, 325, 398
HinP1I	GCGC	6 cut(s)	94, 126, 163, 291, 325, 398
HincII	GTYRAC	2 cut(s)	331, 1943
HindII	GTYRAC	2 cut(s)	331, 1943
HindIII	AAGCTT	2 cut(s)	1410, 1659
HpaII	CCGG	3 cut(s)	346, 1118, 1592
HphI	GGTGA	6 cut(s)	64, 140, 673, 1073, 1996, 2111
Hpy166II	GTNNAC	4 cut(s)	331, 559, 632, 1943
Hpy188III	TCNNGA	7 cut(s)	53, 196, 863, 1118, 1178, 2087, 2109
Hpy8I	GTNNAC	4 cut(s)	331, 559, 632, 1943
Hpy99I	CGWCG	6 cut(s)	13, 28, 80, 83, 236, 356
HpyAV	CCTTC	4 cut(s)	652, 1231, 1320, 1964
HpyCH4III	ACNGT	6 cut(s)	24, 1044, 1271, 1504, 1696, 2017
HpyCH4IV	ACGT	5 cut(s)	78, 243, 255, 285, 1705
HpyF10VI	GCNNNNNNNGC	7 cut(s)	346, 384, 604, 1133, 1667, 1766, 2192
HpyF3I	CTNAG	7 cut(s)	584, 996, 1089, 1354, 2065, 2079, 2162
HpySE526I	ACGT	5 cut(s)	78, 243, 255, 285, 1705
Hsp92I	GRCGYC	2 cut(s)	78, 234
HspAI	GCGC	6 cut(s)	94, 126, 163, 291, 325, 398
Kpn2I	TCCGGA	1 cut(s)	1117
Kzo9I	GATC	9 cut(s)	13, 27, 133, 145, 493, 674, 1092, 1114, 1494
LmnI	GCTCC	8 cut(s)	83, 170, 345, 364, 484, 712, 1564, 1678
Lsp1109I	GCAGC	4 cut(s)	529, 563, 1824, 1841
LweI	GCATC	2 cut(s)	1041, 1914
MaeI	CTAG	1 cut(s)	1998
MaeII	ACGT	5 cut(s)	78, 243, 255, 285, 1705
MaeIII	GTNAC	3 cut(s)	647, 1696, 1842
MalI	GATC	9 cut(s)	15, 29, 135, 147, 495, 676, 1094, 1116, 1496
MbiI	CCGCTC	1 cut(s)	367
MboI	GATC	9 cut(s)	13, 27, 133, 145, 493, 674, 1092, 1114, 1494
MfeI	CAATTG	2 cut(s)	789, 2187
MflI	RGATCY	3 cut(s)	13, 133, 1114
MhlI	GDGCHC	5 cut(s)	309, 489, 822, 1437, 1542
MlyI	GAGTC	6 cut(s)	14, 428, 467, 515, 533, 1999
MmeI	TCCRAC	5 cut(s)	61, 192, 255, 276, 441
MroI	TCCGGA	1 cut(s)	1117
MroXI	GAANNNNTTC	2 cut(s)	1454, 1581
MseI	TTAA	6 cut(s)	390, 741, 771, 1611, 1782, 2175
MslI	CAYNNNNRTG	3 cut(s)	576, 1283, 2045
MspI	CCGG	3 cut(s)	346, 1118, 1592
MspR9I	CCNGG	3 cut(s)	131, 209, 410
MunI	CAATTG	2 cut(s)	789, 2187
Mva1269I	GAATGC	2 cut(s)	1672, 1831
MvaI	CCWGG	3 cut(s)	131, 209, 410
MvnI	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
MwoI	GCNNNNNNNGC	7 cut(s)	346, 384, 604, 1133, 1667, 1766, 2192
NcoI	CCATGG	1 cut(s)	1790
NdeII	GATC	9 cut(s)	13, 27, 133, 145, 493, 674, 1092, 1114, 1494
NlaIV	GGNNCC	7 cut(s)	15, 40, 85, 569, 1002, 1116, 1378
NmeAIII	GCCGAG	2 cut(s)	2014, 2164
NmuCI	GTSAC	2 cut(s)	1696, 1842
NspI	RCATGY	1 cut(s)	1262
PaeR7I	CTCGAG	2 cut(s)	521, 683
PaqCI	CACCTGC	1 cut(s)	275
PceI	AGGCCT	1 cut(s)	1953
PcsI	WCGNNNNNNNCGW	3 cut(s)	228, 240, 282
PctI	GAATGC	2 cut(s)	1672, 1831
PdmI	GAANNNNTTC	2 cut(s)	1454, 1581
PfeI	GAWTC	4 cut(s)	473, 875, 1868, 2083
PflFI	GACNNNGTC	3 cut(s)	221, 242, 284
PkrI	GCNGC	6 cut(s)	427, 519, 553, 1831, 1839, 2194
PleI	GAGTC	6 cut(s)	13, 427, 466, 514, 532, 1999
PpsI	GAGTC	6 cut(s)	13, 427, 466, 514, 532, 1999
Ppu21I	YACGTR	1 cut(s)	1706
PpuMI	RGGWCCY	2 cut(s)	211, 2111
Psp124BI	GAGCTC	1 cut(s)	309
Psp5II	RGGWCCY	2 cut(s)	211, 2111
Psp6I	CCWGG	3 cut(s)	129, 207, 408
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	3 cut(s)	129, 207, 408
PspN4I	GGNNCC	7 cut(s)	15, 40, 85, 569, 1002, 1116, 1378
PspPI	GGNCC	8 cut(s)	211, 298, 369, 559, 568, 1001, 2111, 2194
PspPPI	RGGWCCY	2 cut(s)	211, 2111
PspXI	VCTCGAGB	2 cut(s)	521, 683
PstI	CTGCAG	3 cut(s)	553, 1314, 1842
PstNI	CAGNNNCTG	1 cut(s)	1760
PsuI	RGATCY	3 cut(s)	13, 133, 1114
PsyI	GACNNNGTC	3 cut(s)	221, 242, 284
RsaI	GTAC	2 cut(s)	905, 1403
RsaNI	GTAC	2 cut(s)	904, 1402
RseI	CAYNNNNRTG	3 cut(s)	576, 1283, 2045
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	6 cut(s)	390, 741, 771, 1611, 1782, 2175
SatI	GCNGC	6 cut(s)	426, 518, 552, 1830, 1838, 2193
Sau3AI	GATC	9 cut(s)	13, 27, 133, 145, 493, 674, 1092, 1114, 1494
Sau96I	GGNCC	8 cut(s)	211, 298, 369, 559, 568, 1001, 2111, 2194
SchI	GAGTC	6 cut(s)	14, 428, 467, 515, 533, 1999
ScrFI	CCNGG	3 cut(s)	131, 209, 410
SduI	GDGCHC	5 cut(s)	309, 489, 822, 1437, 1542
SfaNI	GCATC	2 cut(s)	1041, 1914
SfcI	CTRYAG	4 cut(s)	549, 632, 1310, 1838
Sfr274I	CTCGAG	2 cut(s)	521, 683
SinI	GGWCC	6 cut(s)	211, 298, 369, 559, 568, 2111
SlaI	CTCGAG	2 cut(s)	521, 683
SmiMI	CAYNNNNRTG	3 cut(s)	576, 1283, 2045
SmlI	CTYRAG	5 cut(s)	521, 652, 683, 1102, 2198
SmoI	CTYRAG	5 cut(s)	521, 652, 683, 1102, 2198
SseBI	AGGCCT	1 cut(s)	1953
SsiI	CCGC	6 cut(s)	42, 301, 367, 425, 1769, 2192
SspMI	CTAG	1 cut(s)	1998
SstI	GAGCTC	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	1953
StyD4I	CCNGG	3 cut(s)	129, 207, 408
StyI	CCWWGG	2 cut(s)	294, 1790
TaaI	ACNGT	6 cut(s)	24, 1044, 1271, 1504, 1696, 2017
TaiI	ACGT	5 cut(s)	81, 246, 258, 288, 1708
TatI	WGTACW	1 cut(s)	903
TauI	GCSGC	2 cut(s)	428, 2195
TfiI	GAWTC	4 cut(s)	473, 875, 1868, 2083
Tru1I	TTAA	6 cut(s)	390, 741, 771, 1611, 1782, 2175
Tru9I	TTAA	6 cut(s)	390, 741, 771, 1611, 1782, 2175
TscAI	CASTG	2 cut(s)	1362, 1722
TseFI	GTSAC	2 cut(s)	1696, 1842
TseI	GCWGC	4 cut(s)	517, 551, 1829, 1837
Tsp45I	GTSAC	2 cut(s)	1696, 1842
TspDTI	ATGAA	6 cut(s)	580, 974, 1069, 1422, 1799, 1864
TspGWI	ACGGA	2 cut(s)	53, 1700
TspRI	CASTG	2 cut(s)	1362, 1722
Tth111I	GACNNNGTC	3 cut(s)	221, 242, 284
VpaK11BI	GGWCC	6 cut(s)	211, 298, 369, 559, 568, 2111
XapI	RAATTY	4 cut(s)	961, 1076, 1892, 2104
XceI	RCATGY	1 cut(s)	1262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1285
XhoI	CTCGAG	2 cut(s)	521, 683
XmiI	GTMKAC	1 cut(s)	631
XmnI	GAANNNNTTC	2 cut(s)	1454, 1581
XspI	CTAG	1 cut(s)	1998
ZraI	GACGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.