Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005482.1

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Reverse (-)

26624 .. 26947

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005482.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atggtagctctggcggcccatttatccatgatgcgcctcctccacgagtgcatagcctaccaaggcgccctggatctcaacctcaaccacctcctctcccggcactccgacctcgacaagcacctctccaatctccagaaatcctcccaggtcctcgacatcgtcaagtccgacgccgaccacatcctctccaacgtctcctccacctgcgaccccgtcgaccacatcagcaccaatgtccgcgagctcgacctcgcccaatcatgcgtcaactccactctcttctgtatggacgcgattgtggagcaatttctaggtgcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

107

Amino Acids

11.77

Weight (kDa)

5.23

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	215
Acc36I	ACCTGC	1 cut(s)	215
AccB1I	GGYRCC	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	2 cut(s)	243, 296
AciI	CCGC	2 cut(s)	14, 241
AclWI	GGATC	1 cut(s)	81
AcyI	GRCGYC	2 cut(s)	66, 174
AjnI	CCWGG	2 cut(s)	69, 147
AluBI	AGCT	2 cut(s)	8, 247
AluI	AGCT	2 cut(s)	8, 247
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	1 cut(s)	15
AspLEI	GCGC	2 cut(s)	36, 68
AspS9I	GGNCC	2 cut(s)	16, 151
AsuC2I	CCSGG	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	249
BauI	CACGAG	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	249
BciT130I	CCWGG	2 cut(s)	71, 149
BcnI	CCSGG	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	1 cut(s)	314
BfoI	RGCGCY	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	215
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	3 cut(s)	71, 100, 149
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	16, 151
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	3 cut(s)	71, 100, 149
BmsI	GCATC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	100
BsaHI	GRCGYC	2 cut(s)	66, 174
BsaJI	CCNNGG	3 cut(s)	61, 69, 147
BsaXI	ACNNNNNCTCC	6 cut(s)	80, 110, 173, 185, 203, 215
BseBI	CCWGG	2 cut(s)	71, 149
BseDI	CCNNGG	3 cut(s)	61, 69, 147
BseGI	GGATG	1 cut(s)	183
BseRI	GAGGAG	3 cut(s)	29, 83, 190
Bsh1236I	CGCG	2 cut(s)	243, 296
BshFI	GGCC	1 cut(s)	17
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	202
BsmBI	CGTCTC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	2 cut(s)	14, 241
BspANI	GGCC	1 cut(s)	17
BspFNI	CGCG	2 cut(s)	243, 296
BspLI	GGNNCC	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	65
BssECI	CCNNGG	3 cut(s)	61, 69, 147
BssMI	GATC	1 cut(s)	73
BssNI	GRCGYC	2 cut(s)	66, 174
BssSI	CACGAG	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	61
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	2 cut(s)	71, 149
Bst6I	CTCTTC	1 cut(s)	287
BstACI	GRCGYC	2 cut(s)	66, 174
BstC8I	GCNNGC	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	183
BstFNI	CGCG	2 cut(s)	243, 296
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	36, 68
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	2 cut(s)	71, 149
BstSCI	CCNGG	3 cut(s)	69, 98, 147
BstUI	CGCG	2 cut(s)	243, 296
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	183
BveI	ACCTGC	1 cut(s)	215
Cac8I	GCNNGC	1 cut(s)	245
CfoI	GCGC	2 cut(s)	36, 68
Cfr13I	GGNCC	2 cut(s)	16, 151
CseI	GACGC	3 cut(s)	182, 256, 302
CviAII	CATG	2 cut(s)	28, 264
CviJI	RGCY	4 cut(s)	8, 17, 56, 247
CviKI_1	RGCY	4 cut(s)	8, 17, 56, 247
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	2 cut(s)	69, 147
EcoT14I	CCWWGG	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	249
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	61
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	2 cut(s)	31, 267
FaiI	YATR	4 cut(s)	29, 53, 265, 290
FatI	CATG	2 cut(s)	27, 263
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	2 cut(s)	35, 67
GluI	GCNGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	1 cut(s)	100
HgaI	GACGC	3 cut(s)	182, 256, 302
HhaI	GCGC	2 cut(s)	36, 68
Hin1I	GRCGYC	2 cut(s)	66, 174
Hin1II	CATG	2 cut(s)	31, 267
Hin6I	GCGC	2 cut(s)	34, 66
HinP1I	GCGC	2 cut(s)	34, 66
HincII	GTYRAC	2 cut(s)	220, 271
HindII	GTYRAC	2 cut(s)	220, 271
HpaII	CCGG	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	220, 271
Hpy188I	TCNGA	2 cut(s)	109, 172
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	2 cut(s)	220, 271
Hpy99I	CGWCG	2 cut(s)	176, 221
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	2 cut(s)	66, 174
Hsp92II	CATG	2 cut(s)	31, 267
HspAI	GCGC	2 cut(s)	34, 66
KasI	GGCGCC	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	7 cut(s)	56, 83, 113, 134, 149, 161, 220
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	195
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	274
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	308
Mly113I	GGCGCC	1 cut(s)	66
MmeI	TCCRAC	3 cut(s)	132, 195, 216
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	3 cut(s)	71, 100, 149
MvaI	CCWGG	2 cut(s)	71, 149
MvnI	CGCG	2 cut(s)	243, 296
MwoI	GCNNNNNNNGC	1 cut(s)	14
NarI	GGCGCC	1 cut(s)	66
NciI	CCSGG	1 cut(s)	100
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	31, 267
NlaIV	GGNNCC	1 cut(s)	67
PaqCI	CACCTGC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PflFI	GACNNNGTC	2 cut(s)	161, 215
PkrI	GCNGC	1 cut(s)	16
PluTI	GGCGCC	1 cut(s)	69
PpuMI	RGGWCCY	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	69, 147
PspGI	CCWGG	2 cut(s)	69, 147
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	2 cut(s)	16, 151
PspPPI	RGGWCCY	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	73
PsyI	GACNNNGTC	2 cut(s)	161, 215
SacI	GAGCTC	1 cut(s)	249
SalI	GTCGAC	1 cut(s)	218
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	2 cut(s)	16, 151
ScrFI	CCNGG	3 cut(s)	71, 100, 149
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	1 cut(s)	21
SfoI	GGCGCC	1 cut(s)	67
SinI	GGWCC	1 cut(s)	151
Sse9I	AATT	1 cut(s)	308
SsiI	CCGC	2 cut(s)	14, 241
SspDI	GGCGCC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	3 cut(s)	69, 98, 147
StyI	CCWWGG	1 cut(s)	61
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	4 cut(s)	114, 156, 219, 249
TasI	AATT	1 cut(s)	308
TauI	GCSGC	1 cut(s)	17
Tth111I	GACNNNGTC	2 cut(s)	161, 215
VpaK11BI	GGWCC	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.