Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Forward (+)

21813768 .. 21814230

Gene Structure 463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30911.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAGATCGCGGCTGGAATTCGAGCATTTGATGGAGTTGATGGAGCTGAAGAGCAATCAGAGCCAGCAGGTCAACTTCGTGGGGTGTTTGACCAATTTGTTTAAGGACATTGTGCTTACTGGGTGGGAAAATCCGGTGACCGGAATCCGGCGGTCGGTGACCGGAGTCCGGCGGCCGGTGACCGGAGTCCGAGGTTCCGGCCAAGTCTTTTCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

73

Amino Acids

8.14

Weight (kDa)

9.49

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	58
AccII	CGCG	1 cut(s)	10
AciI	CCGC	3 cut(s)	10, 151, 172
AcoI	YGGCCR	2 cut(s)	173, 199
AcsI	RAATTY	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	68
AfiI	CCNNNNNNNGG	6 cut(s)	140, 147, 154, 168, 175, 182
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
AoxI	GGCC	2 cut(s)	173, 199
ApoI	RAATTY	1 cut(s)	17
AsuHPI	GGTGA	3 cut(s)	148, 169, 190
BccI	CCATC	2 cut(s)	25, 34
BfuAI	ACCTGC	1 cut(s)	58
BisI	GCNGC	2 cut(s)	11, 173
BlsI	GCNGC	2 cut(s)	12, 174
BmiI	GGNNCC	1 cut(s)	196
BmrI	ACTGGG	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	129
BoxI	GACNNNNGTC	2 cut(s)	164, 185
BsaJI	CCNNGG	1 cut(s)	190
BsaWI	WCCGGW	4 cut(s)	133, 140, 161, 182
Bsc4I	CCNNNNNNNGG	6 cut(s)	140, 147, 154, 168, 175, 182
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	190
BseLI	CCNNNNNNNGG	6 cut(s)	140, 147, 154, 168, 175, 182
BseNI	ACTGG	1 cut(s)	124
BseX3I	CGGCCG	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	10
Bsh1285I	CGRYCG	2 cut(s)	155, 176
BshFI	GGCC	2 cut(s)	175, 201
BsiEI	CGRYCG	2 cut(s)	155, 176
BsiSI	CCGG	8 cut(s)	134, 141, 148, 162, 169, 176, 183, 198
BslI	CCNNNNNNNGG	6 cut(s)	140, 147, 154, 168, 175, 182
BsnI	GGCC	2 cut(s)	175, 201
Bsp143I	GATC	1 cut(s)	5
BspACI	CCGC	3 cut(s)	10, 151, 172
BspANI	GGCC	2 cut(s)	175, 201
BspFNI	CGCG	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	58
BspQI	GCTCTTC	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	1 cut(s)	5
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	65
BstEII	GGTNACC	3 cut(s)	136, 157, 178
BstFNI	CGCG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	5
BstMCI	CGRYCG	2 cut(s)	155, 176
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstPAI	GACNNNNGTC	2 cut(s)	164, 185
BstPI	GGTNACC	3 cut(s)	136, 157, 178
BstUI	CGCG	1 cut(s)	10
BstZI	CGGCCG	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	175, 201
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	175
CviAII	CATG	1 cut(s)	213
CviJI	RGCY	5 cut(s)	13, 46, 63, 175, 201
CviKI_1	RGCY	5 cut(s)	13, 46, 63, 175, 201
DpnI	GATC	1 cut(s)	7
DpnII	GATC	1 cut(s)	5
EaeI	YGGCCR	2 cut(s)	173, 199
EagI	CGGCCG	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EclXI	CGGCCG	1 cut(s)	173
Eco52I	CGGCCG	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	68
Eco91I	GGTNACC	3 cut(s)	136, 157, 178
EcoO65I	GGTNACC	3 cut(s)	136, 157, 178
EcoRI	GAATTC	1 cut(s)	17
FaeI	CATG	1 cut(s)	216
FaiI	YATR	1 cut(s)	214
FatI	CATG	1 cut(s)	212
Fnu4HI	GCNGC	2 cut(s)	11, 173
Fsp4HI	GCNGC	2 cut(s)	11, 173
GluI	GCNGC	2 cut(s)	11, 173
HaeIII	GGCC	2 cut(s)	175, 201
HapII	CCGG	8 cut(s)	134, 141, 148, 162, 169, 176, 183, 198
Hin1II	CATG	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	3 cut(s)	144, 165, 186
HpaII	CCGG	8 cut(s)	134, 141, 148, 162, 169, 176, 183, 198
HphI	GGTGA	3 cut(s)	148, 169, 190
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	60, 191
Hpy8I	GTNNAC	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	216
Kzo9I	GATC	1 cut(s)	5
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	43
MaeIII	GTNAC	3 cut(s)	136, 157, 178
MalI	GATC	1 cut(s)	7
MboI	GATC	1 cut(s)	5
MboII	GAAGA	1 cut(s)	61
MluCI	AATT	2 cut(s)	17, 94
MlyI	GAGTC	2 cut(s)	174, 195
MnlI	CCTC	1 cut(s)	185
MseI	TTAA	1 cut(s)	102
MspI	CCGG	8 cut(s)	134, 141, 148, 162, 169, 176, 183, 198
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	60
NdeII	GATC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	216
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	3 cut(s)	136, 157, 178
PciSI	GCTCTTC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	12, 174
PleI	GAGTC	2 cut(s)	173, 194
PpsI	GAGTC	2 cut(s)	173, 194
PshAI	GACNNNNGTC	2 cut(s)	164, 185
PspEI	GGTNACC	3 cut(s)	136, 157, 178
PspN4I	GGNNCC	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	11, 173
Sau3AI	GATC	1 cut(s)	5
SchI	GAGTC	2 cut(s)	174, 195
SetI	ASST	3 cut(s)	48, 72, 196
Sse9I	AATT	2 cut(s)	17, 94
SsiI	CCGC	3 cut(s)	10, 151, 172
TaqI	TCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	17, 94
TauI	GCSGC	2 cut(s)	13, 175
TfiI	GAWTC	1 cut(s)	144
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseFI	GTSAC	3 cut(s)	136, 157, 178
Tsp45I	GTSAC	3 cut(s)	136, 157, 178
TspDTI	ATGAA	1 cut(s)	201
XapI	RAATTY	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.