Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Reverse (-)

10014932 .. 10015854

Gene Structure 923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027257

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTACGTGGTGGACGAGGCCAAGGAAGCTCTGAGAAGGTATGATCTGGGGAGGGACACGTGGCACCAGATACTGGAGTCAGAGAGCCTGAAATGGGCGGATCAGATTGGGGTAGGAGGCGGCCATGTTTGTACGGTTTGTCGCGGTCGGATTGTGCTATGCATTTTTGTGTTTGATGGCACAGGAGATTCATATTCCATTTTTGAAGAGGAGTTCCAGACAAGAAAAAGAAGAAGAGATGTTGGGTTAGAGTTTACCGGGCGCTTCAACCTCGACAAGCACCTCTCCAATCTCCAGAAATCCTCCCAGGTCCTCGACATCGTCAAGTCTGACGCCGACCACGTCCTCTCCAACGTCTCCTCCACCTGCGACCTTGCCGACCACGTCAGCGCCAAGGTCCGCGAGCTCGACCTCGCCCAGTCGCGCGTCAACTCCACGCTCCTCCTTTTGGATGCTATTGTGGAGCTCGACCTCGCCCAGTCTCGTGGTTCTGATTTTTTTTTTTTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

171

Amino Acids

19.31

Weight (kDa)

5.19

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG4_N	PF20663	95 - 157	5e-14	Conserved oligomeric Golgi complex subunit 4, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	374
AccB1I	GGYRCC	1 cut(s)	63
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccII	CGCG	4 cut(s)	144, 402, 424, 426
AciI	CCGC	4 cut(s)	98, 120, 144, 400
AclWI	GGATC	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	121
AcvI	CACGTG	1 cut(s)	60
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	2 cut(s)	5, 133
AfiI	CCNNNNNNNGG	3 cut(s)	73, 94, 448
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	2 cut(s)	206, 268
AjiI	CACGTC	2 cut(s)	343, 385
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	3 cut(s)	29, 406, 466
AluI	AGCT	3 cut(s)	29, 406, 466
Alw21I	GWGCWC	2 cut(s)	408, 468
Alw26I	GTCTC	2 cut(s)	361, 486
AlwI	GGATC	1 cut(s)	108
AlwNI	CAGNNNCTG	1 cut(s)	73
AoxI	GGCC	2 cut(s)	18, 121
AspLEI	GCGC	3 cut(s)	264, 392, 426
AspS9I	GGNCC	2 cut(s)	310, 397
AsuC2I	CCSGG	1 cut(s)	259
AvaII	GGWCC	2 cut(s)	310, 397
BaeI	ACNNNNGTAYC	2 cut(s)	62, 95
BanI	GGYRCC	1 cut(s)	63
BanII	GRGCYC	2 cut(s)	408, 468
BauI	CACGAG	1 cut(s)	483
BbrPI	CACGTG	1 cut(s)	60
Bbv12I	GWGCWC	2 cut(s)	408, 468
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	308
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	361, 486
BfoI	RGCGCY	2 cut(s)	265, 393
BfuAI	ACCTGC	1 cut(s)	374
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	2 cut(s)	259, 308
Bme18I	GGWCC	2 cut(s)	310, 397
BmgBI	CACGTC	2 cut(s)	343, 385
BmgT120I	GGNCC	2 cut(s)	310, 397
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	2 cut(s)	259, 308
BmrI	ACTGGG	2 cut(s)	412, 472
BmsI	GCATC	1 cut(s)	442
BmuI	ACTGGG	2 cut(s)	412, 472
BpmI	CTGGAG	2 cut(s)	95, 278
BpuMI	CCSGG	1 cut(s)	259
BsaAI	YACGTR	2 cut(s)	7, 60
BsaHI	GRCGYC	1 cut(s)	333
BsaJI	CCNNGG	3 cut(s)	21, 306, 393
BsaXI	ACNNNNNCTCC	4 cut(s)	332, 344, 362, 374
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 94, 448
Bse1I	ACTGG	3 cut(s)	78, 418, 478
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	3 cut(s)	21, 306, 393
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	3 cut(s)	73, 94, 448
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	3 cut(s)	78, 418, 478
BseRI	GAGGAG	3 cut(s)	224, 349, 431
Bsh1236I	CGCG	4 cut(s)	144, 402, 424, 426
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	20, 123
BshNI	GGYRCC	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	2 cut(s)	408, 468
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	3 cut(s)	73, 94, 448
BsmAI	GTCTC	2 cut(s)	361, 486
BsmBI	CGTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	20, 123
Bsp1286I	GDGCHC	2 cut(s)	408, 468
Bsp143I	GATC	2 cut(s)	43, 100
BspACI	CCGC	4 cut(s)	98, 120, 144, 400
BspANI	GGCC	2 cut(s)	20, 123
BspCNI	CTCAG	1 cut(s)	24
BspFNI	CGCG	4 cut(s)	144, 402, 424, 426
BspLI	GGNNCC	1 cut(s)	65
BspMI	ACCTGC	1 cut(s)	374
BspPI	GGATC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	63
BsrI	ACTGG	3 cut(s)	78, 418, 478
BssECI	CCNNGG	3 cut(s)	21, 306, 393
BssMI	GATC	2 cut(s)	43, 100
BssNI	GRCGYC	1 cut(s)	333
BssSI	CACGAG	1 cut(s)	483
BssT1I	CCWWGG	2 cut(s)	21, 393
Bst2BI	CACGAG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	2 cut(s)	201, 229
BstACI	GRCGYC	1 cut(s)	333
BstBAI	YACGTR	2 cut(s)	7, 60
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	4 cut(s)	144, 402, 424, 426
BstH2I	RGCGCY	2 cut(s)	265, 393
BstHHI	GCGC	3 cut(s)	264, 392, 426
BstKTI	GATC	2 cut(s)	46, 103
BstMAI	GTCTC	2 cut(s)	361, 486
BstMBI	GATC	2 cut(s)	43, 100
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	257, 306
BstUI	CGCG	4 cut(s)	144, 402, 424, 426
BstXI	CCANNNNNNTGG	1 cut(s)	485
BsuRI	GGCC	2 cut(s)	20, 123
BtrI	CACGTC	2 cut(s)	343, 385
BtsCI	GGATG	1 cut(s)	457
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	1 cut(s)	404
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	3 cut(s)	264, 392, 426
Cfr13I	GGNCC	2 cut(s)	310, 397
CseI	GACGC	2 cut(s)	341, 415
Csp6I	GTAC	2 cut(s)	4, 132
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	6 cut(s)	20, 29, 87, 123, 406, 466
CviKI_1	RGCY	6 cut(s)	20, 29, 87, 123, 406, 466
CviQI	GTAC	2 cut(s)	4, 132
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	2 cut(s)	45, 102
DpnII	GATC	2 cut(s)	43, 100
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	201, 229
EarI	CTCTTC	2 cut(s)	201, 229
EciI	GGCGGA	1 cut(s)	113
Ecl136II	GAGCTC	2 cut(s)	406, 466
Eco130I	CCWWGG	2 cut(s)	21, 393
Eco24I	GRGCYC	2 cut(s)	408, 468
Eco47I	GGWCC	2 cut(s)	310, 397
Eco53kI	GAGCTC	2 cut(s)	406, 466
Eco72I	CACGTG	1 cut(s)	60
EcoICRI	GAGCTC	2 cut(s)	406, 466
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	2 cut(s)	21, 393
EcoT22I	ATGCAT	1 cut(s)	164
EcoT38I	GRGCYC	2 cut(s)	408, 468
ErhI	CCWWGG	2 cut(s)	21, 393
Esp3I	CGTCTC	1 cut(s)	361
FaeI	CATG	1 cut(s)	128
FaiI	YATR	4 cut(s)	42, 126, 160, 193
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	121
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	2 cut(s)	408, 468
Fsp4HI	GCNGC	1 cut(s)	121
GlaI	GCGC	3 cut(s)	263, 391, 425
GluI	GCNGC	1 cut(s)	121
GsuI	CTGGAG	2 cut(s)	95, 278
HaeII	RGCGCY	2 cut(s)	265, 393
HaeIII	GGCC	2 cut(s)	20, 123
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	2 cut(s)	341, 415
HhaI	GCGC	3 cut(s)	264, 392, 426
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	3 cut(s)	262, 390, 424
HinP1I	GCGC	3 cut(s)	262, 390, 424
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	2 cut(s)	77, 188
HpaII	CCGG	1 cut(s)	258
Hpy166II	GTNNAC	3 cut(s)	13, 255, 430
Hpy188I	TCNGA	6 cut(s)	33, 82, 105, 150, 331, 493
Hpy188III	TCNNGA	2 cut(s)	217, 295
Hpy8I	GTNNAC	3 cut(s)	13, 255, 430
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	5 cut(s)	6, 59, 342, 354, 384
HpyCH4V	TGCA	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	5 cut(s)	6, 59, 342, 354, 384
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	3 cut(s)	262, 390, 424
Kzo9I	GATC	2 cut(s)	43, 100
LmnI	GCTCC	2 cut(s)	444, 463
LweI	GCATC	1 cut(s)	442
MaeII	ACGT	5 cut(s)	6, 59, 342, 354, 384
MalI	GATC	2 cut(s)	45, 102
MboI	GATC	2 cut(s)	43, 100
MboII	GAAGA	3 cut(s)	218, 243, 246
MhlI	GDGCHC	2 cut(s)	408, 468
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	2 cut(s)	128, 375
Mph1103I	ATGCAT	1 cut(s)	164
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	2 cut(s)	259, 308
MvaI	CCWGG	1 cut(s)	308
MvnI	CGCG	4 cut(s)	144, 402, 424, 426
MwoI	GCNNNNNNNGC	1 cut(s)	26
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	2 cut(s)	43, 100
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	164
PaqCI	CACCTGC	1 cut(s)	374
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 339
PfeI	GAWTC	1 cut(s)	188
PflFI	GACNNNGTC	3 cut(s)	320, 341, 383
PflMI	CCANNNNNTGG	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	85
PmaCI	CACGTG	1 cut(s)	60
PmlI	CACGTG	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	85
Ppu21I	YACGTR	2 cut(s)	7, 60
PpuMI	RGGWCCY	1 cut(s)	310
Psp124BI	GAGCTC	2 cut(s)	408, 468
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	306
PspCI	CACGTG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	2 cut(s)	310, 397
PspPPI	RGGWCCY	1 cut(s)	310
PstNI	CAGNNNCTG	1 cut(s)	73
PsyI	GACNNNGTC	3 cut(s)	320, 341, 383
RsaI	GTAC	2 cut(s)	5, 133
RsaNI	GTAC	2 cut(s)	4, 132
RseI	CAYNNNNRTG	1 cut(s)	167
SacI	GAGCTC	2 cut(s)	408, 468
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	2 cut(s)	43, 100
Sau96I	GGNCC	2 cut(s)	310, 397
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	259, 308
SduI	GDGCHC	2 cut(s)	408, 468
SfaNI	GCATC	1 cut(s)	442
SinI	GGWCC	2 cut(s)	310, 397
SmiMI	CAYNNNNRTG	1 cut(s)	167
SsiI	CCGC	4 cut(s)	98, 120, 144, 400
SstI	GAGCTC	2 cut(s)	408, 468
StyD4I	CCNGG	2 cut(s)	257, 306
StyI	CCWWGG	2 cut(s)	21, 393
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	5 cut(s)	9, 62, 345, 357, 387
TaqI	TCGA	4 cut(s)	273, 315, 408, 468
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	180
Tth111I	GACNNNGTC	3 cut(s)	320, 341, 383
Van91I	CCANNNNNTGG	1 cut(s)	73
VpaK11BI	GGWCC	2 cut(s)	310, 397
Zsp2I	ATGCAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.