Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Reverse (-)

20205962 .. 20207011

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0114400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGAAGCTAACGACTTGGTTGAGCTTCAATCAAAGGGTCAGAAGCTTACATGGTGCAATAATTGGCCTGATGGGGGCCAAATAAAGATCAAGCTGGATAGAGGCGTAGTTAATACAAGATGGTTAGAGCGGTGGCCTGATTCAAGTGTTTTCAATCATCCTCGATTGGGGTCTGATCATTGTCCTCTAATTTTGGACTCCGATTCACCATTGGTTCGAGGGTCTAAATCATTTAAGTTTGAGCCGATGTGGGCTGAAGATCCTGACTGTAGAGAGATTGTGGAGGCCTCATGGACCGACAACATTCCAACAATTGGGGCTGCTCAATGGGTCGCTAGAAGTCAAAGATGTAGTCTTGATTTATCTAAGTGGAGTAAGAGGAAATTCTCTAATAACCGTATGGCCATTAATAGAAGAACAGAGGAGCTTCAAGTCATACAGGAGTCTACAACTGTAGAAGCACGCAACAGAGAGTCCGTTTTAATTGGAGAGATTGATGTCTTATGGGAAAAAGAGGAGAAGTATTGGACACAACGATCCAGAATTAATTGGCTCAAAGCTGGGGACTCAAATACCAAGTTCTTTCATCTGACAACCATCCAAAGACGACAGCGGAACAGAGTACTTAGGCTCAAGTCTGCAAGTGATGTTTGGCTGGATCGTGAGAGCACTATTCGCTCTGAAGTCGAAAATTATTTCAAAGATATCTTCAAGAGCTCTGGTGAGAGAGATTGGAATGAGGCTTTACAAGCGGTGACACAGGTTATTACCCCTGACATGAACTGTTCTCTTACCAAAGACTTCTCTGTTGAAGAAATTAAAGCCGCTGCTTTCCAAATGGGGGCTGACAAGGCTCCGGGTCCGGATGGTTTTCATGGTATCTTTTTTCATAAATTTTGGGACATCATCAATGAGATTATGAGGGCTACTGCAAAGGAGTTTCATCGTACTGCACATATCCTTTCGGAGCTGAACAAGACAAACATTGTACTCATCCCAAAGATCCCTTGTCCTGAGAAGGTCGATCAATTTCGCCCTATTAGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

349

Amino Acids

40.54

Weight (kDa)

7.64

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	130
AccI	GTMKAC	1 cut(s)	446
AccIII	TCCGGA	1 cut(s)	862
AciI	CCGC	4 cut(s)	130, 613, 752, 825
AclWI	GGATC	4 cut(s)	254, 531, 666, 997
AcoI	YGGCCR	1 cut(s)	402
AcsI	RAATTY	2 cut(s)	383, 893
AcuI	CTGAAG	2 cut(s)	276, 702
AfaI	GTAC	3 cut(s)	624, 949, 990
AfiI	CCNNNNNNNGG	4 cut(s)	74, 167, 314, 841
AgsI	TTSAA	7 cut(s)	29, 144, 154, 431, 700, 712, 812
AluBI	AGCT	8 cut(s)	8, 25, 46, 94, 427, 560, 717, 970
AluI	AGCT	8 cut(s)	8, 25, 46, 94, 427, 560, 717, 970
Alw21I	GWGCWC	2 cut(s)	671, 719
AlwI	GGATC	4 cut(s)	254, 531, 666, 997
Aor13HI	TCCGGA	1 cut(s)	862
AoxI	GGCC	5 cut(s)	65, 76, 134, 285, 402
ApeKI	GCWGC	2 cut(s)	320, 827
ApoI	RAATTY	2 cut(s)	383, 893
ArsI	GACNNNNNNTTYG	2 cut(s)	337, 369
AseI	ATTAAT	2 cut(s)	408, 546
AspS9I	GGNCC	3 cut(s)	76, 294, 860
AsuC2I	CCSGG	1 cut(s)	858
AsuHPI	GGTGA	3 cut(s)	198, 734, 766
AvaII	GGWCC	2 cut(s)	294, 860
BalI	TGGCCA	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	719
Bbv12I	GWGCWC	2 cut(s)	671, 719
BbvI	GCAGC	2 cut(s)	307, 814
BccI	CCATC	4 cut(s)	65, 114, 605, 860
BclI	TGATCA	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	858
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	2 cut(s)	268, 453
BisI	GCNGC	3 cut(s)	321, 825, 828
BlsI	GCNGC	3 cut(s)	322, 826, 829
BmcAI	AGTACT	1 cut(s)	624
Bme1390I	CCNGG	1 cut(s)	858
Bme18I	GGWCC	2 cut(s)	294, 860
BmgT120I	GGNCC	3 cut(s)	76, 294, 860
BmiI	GGNNCC	3 cut(s)	77, 855, 861
BmrFI	CCNGG	1 cut(s)	858
BpuEI	CTTGAG	1 cut(s)	617
BpuMI	CCSGG	1 cut(s)	858
BsaWI	WCCGGW	1 cut(s)	862
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 167, 314, 841
BseAI	TCCGGA	1 cut(s)	862
BseGI	GGATG	4 cut(s)	157, 597, 871, 993
BseLI	CCNNNNNNNGG	4 cut(s)	74, 167, 314, 841
BseMII	CTCAG	1 cut(s)	1005
BseRI	GAGGAG	2 cut(s)	437, 530
BseXI	GCAGC	2 cut(s)	307, 814
BseYI	CCCAGC	1 cut(s)	560
BsgI	GTGCAG	1 cut(s)	936
BshFI	GGCC	5 cut(s)	67, 78, 136, 287, 404
BsiHKAI	GWGCWC	2 cut(s)	671, 719
BsiSI	CCGG	2 cut(s)	857, 863
BslFI	GGGAC	2 cut(s)	578, 914
BslI	CCNNNNNNNGG	4 cut(s)	74, 167, 314, 841
BsmFI	GGGAC	2 cut(s)	578, 914
BsnI	GGCC	5 cut(s)	67, 78, 136, 287, 404
Bsp1286I	GDGCHC	2 cut(s)	671, 719
Bsp13I	TCCGGA	1 cut(s)	862
Bsp143I	GATC	7 cut(s)	87, 175, 259, 536, 658, 1002, 1024
BspACI	CCGC	4 cut(s)	130, 613, 752, 825
BspANI	GGCC	5 cut(s)	67, 78, 136, 287, 404
BspCNI	CTCAG	1 cut(s)	1006
BspEI	TCCGGA	1 cut(s)	862
BspLI	GGNNCC	3 cut(s)	77, 855, 861
BspPI	GGATC	4 cut(s)	254, 531, 666, 997
BsrBI	CCGCTC	1 cut(s)	130
BssMI	GATC	7 cut(s)	87, 175, 259, 536, 658, 1002, 1024
Bst4CI	ACNGT	4 cut(s)	269, 398, 454, 785
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	3 cut(s)	366, 626, 1014
BstF5I	GGATG	4 cut(s)	157, 597, 871, 993
BstKTI	GATC	7 cut(s)	90, 178, 262, 539, 661, 1005, 1027
BstMBI	GATC	7 cut(s)	87, 175, 259, 536, 658, 1002, 1024
BstMWI	GCNNNNNNNGC	3 cut(s)	675, 749, 851
BstSCI	CCNGG	1 cut(s)	856
BstSFI	CTRYAG	2 cut(s)	268, 453
BstV1I	GCAGC	2 cut(s)	307, 814
BstX2I	RGATCY	2 cut(s)	259, 1002
BstYI	RGATCY	2 cut(s)	259, 1002
BsuRI	GGCC	5 cut(s)	67, 78, 136, 287, 404
BtsCI	GGATG	4 cut(s)	157, 597, 871, 993
Cac8I	GCNNGC	1 cut(s)	463
Cfr13I	GGNCC	3 cut(s)	76, 294, 860
Csp6I	GTAC	3 cut(s)	623, 948, 989
CviAII	CATG	4 cut(s)	51, 291, 778, 875
CviQI	GTAC	3 cut(s)	623, 948, 989
DdeI	CTNAG	3 cut(s)	366, 626, 1014
DpnI	GATC	7 cut(s)	89, 177, 261, 538, 660, 1004, 1026
DpnII	GATC	7 cut(s)	87, 175, 259, 536, 658, 1002, 1024
EaeI	YGGCCR	1 cut(s)	402
Ecl136II	GAGCTC	1 cut(s)	717
Eco147I	AGGCCT	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	719
Eco32I	GATATC	1 cut(s)	706
Eco47I	GGWCC	2 cut(s)	294, 860
Eco53kI	GAGCTC	1 cut(s)	717
Eco57I	CTGAAG	2 cut(s)	276, 702
EcoICRI	GAGCTC	1 cut(s)	717
EcoRV	GATATC	1 cut(s)	706
EcoT38I	GRGCYC	1 cut(s)	719
FaeI	CATG	4 cut(s)	54, 294, 781, 878
FaqI	GGGAC	2 cut(s)	578, 914
FatI	CATG	4 cut(s)	50, 290, 777, 874
FbaI	TGATCA	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	446
Fnu4HI	GCNGC	3 cut(s)	321, 825, 828
FokI	GGATG	4 cut(s)	144, 584, 878, 980
FriOI	GRGCYC	1 cut(s)	719
Fsp4HI	GCNGC	3 cut(s)	321, 825, 828
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	3 cut(s)	321, 825, 828
GsaI	CCCAGC	1 cut(s)	564
HaeIII	GGCC	5 cut(s)	67, 78, 136, 287, 404
HapII	CCGG	2 cut(s)	857, 863
Hin1II	CATG	4 cut(s)	54, 294, 781, 878
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	6 cut(s)	140, 197, 203, 443, 473, 566
HpaII	CCGG	2 cut(s)	857, 863
HphI	GGTGA	3 cut(s)	198, 734, 766
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188I	TCNGA	6 cut(s)	42, 175, 202, 591, 682, 967
Hpy188III	TCNNGA	7 cut(s)	263, 356, 540, 662, 712, 863, 1013
Hpy8I	GTNNAC	1 cut(s)	447
HpyAV	CCTTC	1 cut(s)	1012
HpyCH4III	ACNGT	4 cut(s)	269, 398, 454, 785
HpyCH4V	TGCA	4 cut(s)	57, 641, 932, 953
HpyF10VI	GCNNNNNNNGC	3 cut(s)	675, 749, 851
HpyF3I	CTNAG	3 cut(s)	366, 626, 1014
Hsp92II	CATG	4 cut(s)	54, 294, 781, 878
Kpn2I	TCCGGA	1 cut(s)	862
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	7 cut(s)	87, 175, 259, 536, 658, 1002, 1024
LmnI	GCTCC	3 cut(s)	424, 859, 967
Lsp1109I	GCAGC	2 cut(s)	307, 814
MaeI	CTAG	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	754
MalI	GATC	7 cut(s)	89, 177, 261, 538, 660, 1004, 1026
MbiI	CCGCTC	1 cut(s)	130
MboI	GATC	7 cut(s)	87, 175, 259, 536, 658, 1002, 1024
MboII	GAAGA	4 cut(s)	269, 426, 700, 824
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	2 cut(s)	259, 1002
MhlI	GDGCHC	2 cut(s)	671, 719
MlsI	TGGCCA	1 cut(s)	404
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	4 cut(s)	191, 452, 482, 560
MmeI	TCCRAC	1 cut(s)	332
Mox20I	TGGCCA	1 cut(s)	404
MroI	TCCGGA	1 cut(s)	862
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	6 cut(s)	111, 234, 408, 482, 546, 819
Msp20I	TGGCCA	1 cut(s)	404
MspA1I	CMGCKG	2 cut(s)	613, 827
MspI	CCGG	2 cut(s)	857, 863
MspR9I	CCNGG	1 cut(s)	858
MunI	CAATTG	1 cut(s)	312
MwoI	GCNNNNNNNGC	3 cut(s)	675, 749, 851
NciI	CCSGG	1 cut(s)	858
NdeII	GATC	7 cut(s)	87, 175, 259, 536, 658, 1002, 1024
NlaIII	CATG	4 cut(s)	54, 294, 781, 878
NlaIV	GGNNCC	3 cut(s)	77, 855, 861
NmuCI	GTSAC	1 cut(s)	754
PceI	AGGCCT	1 cut(s)	287
PfeI	GAWTC	2 cut(s)	140, 203
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	3 cut(s)	322, 826, 829
PleI	GAGTC	4 cut(s)	191, 451, 481, 560
PpsI	GAGTC	4 cut(s)	191, 451, 481, 560
PshBI	ATTAAT	2 cut(s)	408, 546
Psp124BI	GAGCTC	1 cut(s)	719
PspFI	CCCAGC	1 cut(s)	560
PspN4I	GGNNCC	3 cut(s)	77, 855, 861
PspPI	GGNCC	3 cut(s)	76, 294, 860
PsuI	RGATCY	2 cut(s)	259, 1002
RsaI	GTAC	3 cut(s)	624, 949, 990
RsaNI	GTAC	3 cut(s)	623, 948, 989
SacI	GAGCTC	1 cut(s)	719
SaqAI	TTAA	6 cut(s)	111, 234, 408, 482, 546, 819
SatI	GCNGC	3 cut(s)	321, 825, 828
Sau3AI	GATC	7 cut(s)	87, 175, 259, 536, 658, 1002, 1024
Sau96I	GGNCC	3 cut(s)	76, 294, 860
ScaI	AGTACT	1 cut(s)	624
SchI	GAGTC	4 cut(s)	191, 452, 482, 560
ScrFI	CCNGG	1 cut(s)	858
SduI	GDGCHC	2 cut(s)	671, 719
SfcI	CTRYAG	2 cut(s)	268, 453
SinI	GGWCC	2 cut(s)	294, 860
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	4 cut(s)	130, 613, 752, 825
SspMI	CTAG	1 cut(s)	336
SstI	GAGCTC	1 cut(s)	719
StuI	AGGCCT	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	856
TaaI	ACNGT	4 cut(s)	269, 398, 454, 785
TaqI	TCGA	4 cut(s)	163, 217, 687, 1023
TaqII	GACCGA	1 cut(s)	311
TatI	WGTACW	2 cut(s)	622, 988
TauI	GCSGC	1 cut(s)	827
TfiI	GAWTC	2 cut(s)	140, 203
Tru1I	TTAA	6 cut(s)	111, 234, 408, 482, 546, 819
Tru9I	TTAA	6 cut(s)	111, 234, 408, 482, 546, 819
TseFI	GTSAC	1 cut(s)	754
TseI	GCWGC	2 cut(s)	320, 827
Tsp45I	GTSAC	1 cut(s)	754
TspDTI	ATGAA	5 cut(s)	575, 794, 863, 878, 932
TspGWI	ACGGA	1 cut(s)	466
Van91I	CCANNNNNTGG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	294, 860
VspI	ATTAAT	2 cut(s)	408, 546
XapI	RAATTY	2 cut(s)	383, 893
XmiI	GTMKAC	1 cut(s)	446
XspI	CTAG	1 cut(s)	336
ZrmI	AGTACT	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.