Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005302.1

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Reverse (-)

27412 .. 29955

Gene Structure 2544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005302.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atggcagctccggcggcccatttatccatgccgcgcctcctccacgagtgcatagcctaccaacgagccctggatctcaacctcgaccacctcctctcccagcgctccgacctcgacaagaacctctccaacgtctcctccacctgcgacctctccgaccacgtcagcgccaaggtccgcgagctcgacctcacccagtcgcgcgtcaactccatgctcctccattttgatgcgattgtggagcaatttctgggtgcccagagcacttttttttttgttcatcagaggtccgggaagctcaaacctccacgccgaaatcggttctgggcttcgctggtagggctcggacaacgtcactctgttggacggcccgtcggcgatgagctcccacgtcgtctcctcaaggcgtcaaagaagtccgcctcgtccaaccgctcttacgccggcgaccggaacagagggatgggcgtcgatgccgatgatgatcgcatcatttcggatgattccgacctggttgtgatctgcgagaagctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

178

Amino Acids

19.88

Weight (kDa)

8.88

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	254
AccBSI	CCGCTC	1 cut(s)	435
AccII	CGCG	4 cut(s)	34, 180, 202, 204
AciI	CCGC	5 cut(s)	14, 32, 178, 420, 433
AclWI	GGATC	1 cut(s)	81
AcyI	GRCGYC	2 cut(s)	407, 468
AfeI	AGCGCT	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	450
AhdI	GACNNNNNGTC	1 cut(s)	371
AjiI	CACGTC	2 cut(s)	163, 392
AjnI	CCWGG	2 cut(s)	69, 510
AluBI	AGCT	5 cut(s)	8, 184, 298, 385, 532
AluI	AGCT	5 cut(s)	8, 184, 298, 385, 532
Alw21I	GWGCWC	3 cut(s)	186, 266, 387
Alw26I	GTCTC	2 cut(s)	139, 401
AlwI	GGATC	1 cut(s)	81
Aor51HI	AGCGCT	1 cut(s)	104
AoxI	GGCC	2 cut(s)	15, 368
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	4 cut(s)	36, 105, 170, 204
AspS9I	GGNCC	4 cut(s)	16, 175, 288, 369
AsuC2I	CCSGG	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	184
AvaII	GGWCC	2 cut(s)	175, 288
BaeGI	GKGCMC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	4 cut(s)	70, 186, 345, 387
BauI	CACGAG	1 cut(s)	44
Bbv12I	GWGCWC	3 cut(s)	186, 266, 387
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	457
BceAI	ACGGC	1 cut(s)	383
BciT130I	CCWGG	2 cut(s)	71, 512
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	139, 401
BfoI	RGCGCY	2 cut(s)	106, 171
BfuAI	ACCTGC	1 cut(s)	152
BisI	GCNGC	3 cut(s)	6, 15, 32
BlsI	GCNGC	3 cut(s)	7, 16, 33
Bme1390I	CCNGG	3 cut(s)	71, 292, 512
Bme18I	GGWCC	2 cut(s)	175, 288
BmeRI	GACNNNNNGTC	1 cut(s)	371
BmgBI	CACGTC	2 cut(s)	163, 392
BmgT120I	GGNCC	4 cut(s)	16, 175, 288, 369
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	3 cut(s)	71, 292, 512
BmrI	ACTGGG	1 cut(s)	190
BmsI	GCATC	3 cut(s)	220, 463, 498
BmuI	ACTGGG	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	386
BpuMI	CCSGG	1 cut(s)	292
BsaBI	GATNNNNATC	1 cut(s)	483
BsaHI	GRCGYC	2 cut(s)	407, 468
BsaJI	CCNNGG	2 cut(s)	69, 171
BsaWI	WCCGGW	1 cut(s)	450
BsaXI	ACNNNNNCTCC	6 cut(s)	80, 110, 122, 152, 381, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	450
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	2 cut(s)	71, 512
BseDI	CCNNGG	2 cut(s)	69, 171
BseGI	GGATG	2 cut(s)	468, 505
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	5 cut(s)	29, 83, 127, 209, 389
BseSI	GKGCMC	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	99
Bsh1236I	CGCG	4 cut(s)	34, 180, 202, 204
Bsh1285I	CGRYCG	1 cut(s)	451
BshFI	GGCC	2 cut(s)	17, 370
BshNI	GGYRCC	1 cut(s)	254
BsiEI	CGRYCG	1 cut(s)	451
BsiHKAI	GWGCWC	3 cut(s)	186, 266, 387
BsiSI	CCGG	4 cut(s)	11, 291, 444, 451
BslI	CCNNNNNNNGG	1 cut(s)	450
BsmAI	GTCTC	2 cut(s)	139, 401
BsmBI	CGTCTC	2 cut(s)	139, 401
BsnI	GGCC	2 cut(s)	17, 370
Bsp1286I	GDGCHC	6 cut(s)	70, 186, 259, 266, 345, 387
Bsp143I	GATC	3 cut(s)	73, 484, 519
BspACI	CCGC	5 cut(s)	14, 32, 178, 420, 433
BspANI	GGCC	2 cut(s)	17, 370
BspFNI	CGCG	4 cut(s)	34, 180, 202, 204
BspLI	GGNNCC	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	152
BspPI	GGATC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	254
BsrBI	CCGCTC	1 cut(s)	435
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	69, 171
BssMI	GATC	3 cut(s)	73, 484, 519
BssNI	GRCGYC	2 cut(s)	407, 468
BssSI	CACGAG	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	2 cut(s)	71, 512
BstACI	GRCGYC	2 cut(s)	407, 468
BstC8I	GCNNGC	2 cut(s)	182, 445
BstF5I	GGATG	2 cut(s)	468, 505
BstFNI	CGCG	4 cut(s)	34, 180, 202, 204
BstH2I	RGCGCY	2 cut(s)	106, 171
BstHHI	GCGC	4 cut(s)	36, 105, 170, 204
BstKTI	GATC	3 cut(s)	76, 487, 522
BstMAI	GTCTC	2 cut(s)	139, 401
BstMBI	GATC	3 cut(s)	73, 484, 519
BstMCI	CGRYCG	1 cut(s)	451
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 14, 340
BstNI	CCWGG	2 cut(s)	71, 512
BstSCI	CCNGG	3 cut(s)	69, 290, 510
BstSLI	GKGCMC	1 cut(s)	259
BstUI	CGCG	4 cut(s)	34, 180, 202, 204
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	17, 370
BtgZI	GCGATG	1 cut(s)	393
BtrI	CACGTC	2 cut(s)	163, 392
BtsCI	GGATG	2 cut(s)	468, 505
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	2 cut(s)	182, 445
CfoI	GCGC	4 cut(s)	36, 105, 170, 204
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	4 cut(s)	16, 175, 288, 369
CseI	GACGC	3 cut(s)	193, 396, 457
CsiI	ACCWGGT	1 cut(s)	510
CviAII	CATG	2 cut(s)	28, 214
DpnI	GATC	3 cut(s)	75, 486, 521
DpnII	GATC	3 cut(s)	73, 484, 519
DriI	GACNNNNNGTC	1 cut(s)	371
Eam1105I	GACNNNNNGTC	1 cut(s)	371
EciI	GGCGGA	1 cut(s)	409
Ecl136II	GAGCTC	2 cut(s)	184, 385
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	4 cut(s)	70, 186, 345, 387
Eco47I	GGWCC	2 cut(s)	175, 288
Eco47III	AGCGCT	1 cut(s)	104
Eco53kI	GAGCTC	2 cut(s)	184, 385
EcoICRI	GAGCTC	2 cut(s)	184, 385
EcoRII	CCWGG	2 cut(s)	69, 510
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	4 cut(s)	70, 186, 345, 387
ErhI	CCWWGG	1 cut(s)	171
Esp3I	CGTCTC	2 cut(s)	139, 401
FaeI	CATG	2 cut(s)	31, 217
FaiI	YATR	3 cut(s)	29, 53, 215
FatI	CATG	2 cut(s)	27, 213
Fnu4HI	GCNGC	3 cut(s)	6, 15, 32
FokI	GGATG	2 cut(s)	475, 512
FriOI	GRGCYC	4 cut(s)	70, 186, 345, 387
Fsp4HI	GCNGC	3 cut(s)	6, 15, 32
GlaI	GCGC	4 cut(s)	35, 104, 169, 203
GluI	GCNGC	3 cut(s)	6, 15, 32
GsaI	CCCAGC	1 cut(s)	103
HaeII	RGCGCY	2 cut(s)	106, 171
HaeIII	GGCC	2 cut(s)	17, 370
HapII	CCGG	4 cut(s)	11, 291, 444, 451
HgaI	GACGC	3 cut(s)	193, 396, 457
HhaI	GCGC	4 cut(s)	36, 105, 170, 204
Hin1I	GRCGYC	2 cut(s)	407, 468
Hin1II	CATG	2 cut(s)	31, 217
Hin6I	GCGC	4 cut(s)	34, 103, 168, 202
HinP1I	GCGC	4 cut(s)	34, 103, 168, 202
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	1 cut(s)	503
HpaII	CCGG	4 cut(s)	11, 291, 444, 451
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	7 cut(s)	109, 157, 285, 347, 499, 508, 536
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	3 cut(s)	377, 396, 473
HpyCH4IV	ACGT	4 cut(s)	132, 162, 352, 391
HpyCH4V	TGCA	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 14, 340
HpySE526I	ACGT	4 cut(s)	132, 162, 352, 391
Hsp92I	GRCGYC	2 cut(s)	407, 468
Hsp92II	CATG	2 cut(s)	31, 217
HspAI	GCGC	4 cut(s)	34, 103, 168, 202
KroI	GCCGGC	1 cut(s)	443
KroNI	GCCGGC	1 cut(s)	445
Kzo9I	GATC	3 cut(s)	73, 484, 519
LmnI	GCTCC	5 cut(s)	13, 110, 222, 241, 390
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	3 cut(s)	220, 463, 498
MabI	ACCWGGT	1 cut(s)	510
MaeII	ACGT	4 cut(s)	132, 162, 352, 391
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	3 cut(s)	75, 486, 521
MbiI	CCGCTC	1 cut(s)	435
MboI	GATC	3 cut(s)	73, 484, 519
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	6 cut(s)	70, 186, 259, 266, 345, 387
MluCI	AATT	1 cut(s)	245
MmeI	TCCRAC	6 cut(s)	132, 153, 180, 343, 453, 531
MreI	CGCCGGCG	1 cut(s)	443
MroNI	GCCGGC	1 cut(s)	443
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	4 cut(s)	11, 291, 444, 451
MspR9I	CCNGG	3 cut(s)	71, 292, 512
MvaI	CCWGG	2 cut(s)	71, 512
MvnI	CGCG	4 cut(s)	34, 180, 202, 204
MwoI	GCNNNNNNNGC	3 cut(s)	11, 14, 340
NaeI	GCCGGC	1 cut(s)	445
NciI	CCSGG	1 cut(s)	292
NdeII	GATC	3 cut(s)	73, 484, 519
NgoMIV	GCCGGC	1 cut(s)	443
NlaIII	CATG	2 cut(s)	31, 217
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	353
PaqCI	CACCTGC	1 cut(s)	152
PdiI	GCCGGC	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	503
PflFI	GACNNNGTC	2 cut(s)	161, 351
PfoI	TCCNGGA	1 cut(s)	290
PkrI	GCNGC	3 cut(s)	7, 16, 33
Psp124BI	GAGCTC	2 cut(s)	186, 387
Psp6I	CCWGG	2 cut(s)	69, 510
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	2 cut(s)	69, 510
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	4 cut(s)	16, 175, 288, 369
PsuI	RGATCY	1 cut(s)	73
PsyI	GACNNNGTC	2 cut(s)	161, 351
RseI	CAYNNNNRTG	1 cut(s)	228
SacI	GAGCTC	2 cut(s)	186, 387
SatI	GCNGC	3 cut(s)	6, 15, 32
Sau3AI	GATC	3 cut(s)	73, 484, 519
Sau96I	GGNCC	4 cut(s)	16, 175, 288, 369
ScrFI	CCNGG	3 cut(s)	71, 292, 512
SduI	GDGCHC	6 cut(s)	70, 186, 259, 266, 345, 387
SexAI	ACCWGGT	1 cut(s)	510
SfaNI	GCATC	3 cut(s)	220, 463, 498
SgrAI	CRCCGGYG	1 cut(s)	443
SinI	GGWCC	2 cut(s)	175, 288
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	1 cut(s)	245
SsiI	CCGC	5 cut(s)	14, 32, 178, 420, 433
SstI	GAGCTC	2 cut(s)	186, 387
StyD4I	CCNGG	3 cut(s)	69, 290, 510
StyI	CCWWGG	1 cut(s)	171
TaiI	ACGT	4 cut(s)	135, 165, 355, 394
TaqI	TCGA	4 cut(s)	84, 114, 186, 471
TasI	AATT	1 cut(s)	245
TauI	GCSGC	2 cut(s)	17, 34
TfiI	GAWTC	1 cut(s)	503
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	269
Tth111I	GACNNNGTC	2 cut(s)	161, 351
VpaK11BI	GGWCC	2 cut(s)	175, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.