Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Reverse (-)

23346610 .. 23348590

Gene Structure 1981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1159700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGTGGAGAATGTGAGGAAGGCTATAAGGATCGATGAACATGTGCCTGACAGTCTCACGACTTCAATGGTGGACGACGTGTTCTATGTTTTGCAGAGTTGCTTGCGGAGGGCAATATCCACTTTGAATATCAGCTCAGTGATTGCTGTGTTGAGTGGTGCGAGTAGTTTGTTGAGCAATGAGTATCACGAGGCTTTGCAAGAGAGGATGAGAGAGCCAAATCTTGGCGCAAAGCTGTTCCTAGGTGGTGTTGGGGTGCAAAAAACTGGGACGGAGATTGCCACGGTTTTGAATAATATGGATGTCAGTAGCGAGTACGTCCTCAAACTAAAGCACGAGATTGAGGAGCAATGCTTAGAGGTGTTTCCTGCACCAGTTGATAGAGAAAAGGTCAAGTCTTGCCTGTCCGAGCTAGGGGATATGAGCAACACATTCAAGCAAGCGTTGAATGCTGGCTTGGAACAACTTGTGGCTACTGTGACACCCCGTATCCGTCCAGTGCTAGATAATGTGGCAACGATCAGCTATGAGCTATCAGAGGCTGAATACGCAGATAATGAGGTTAACGACCCATGGGTTCAAAGACTTCTTCATGCTGTTGAGACGAATGTAGCATGGCTCCAGCCGCTAATGACTGCCAACAACTACGACTCATTTGTGCATTTTGTCATCGAGTTCATTGTGAAGAGGCTTGAAGTGATTATGATGCAGAAGAGATTCAGCCAACTTGGAGGCCTTCAGCTCGACAGAGATGCCAGGGCATTGGTAAGCCACTTCTCTGGTATGACTCAAAGGACCGTCAGAGACAAATTTGCGCGTCTCACACAAATGGCGACAATCCTGAACTTGGAAAAGGTCTCGGAGATTCTTGATTTCTGGGGCGAGAACTCGGGACCTATGACCTGGAGACTGACCCCAGCCGAGGTCAGGCGAGTCCTGGGTCTGAGAGTTGATTTTAAACCAGAAGCAATTTCCGCTCTTAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

330

Amino Acids

37.05

Weight (kDa)

5.42

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG4_m	PF08318	1 - 70	6.4e-19	COG4 transport protein, middle alpha-helical bundle
COG4_C	PF20662	95 - 311	1.5e-64	Conserved oligomeric Golgi complex subunit 4, C-terminal
RINT1_TIP1	PF04437	145 - 286	3.5e-08	RINT-1/TIP-1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	224
AccBSI	CCGCTC	1 cut(s)	977
AccII	CGCG	1 cut(s)	817
AciI	CCGC	3 cut(s)	106, 626, 975
AclWI	GGATC	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	809
AcuI	CTGAAG	1 cut(s)	722
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	5 cut(s)	224, 414, 847, 922, 927
AflII	CTTAAG	1 cut(s)	980
AflIII	ACRYGT	2 cut(s)	40, 78
AgsI	TTSAA	7 cut(s)	66, 127, 292, 436, 448, 581, 695
AjiI	CACGTC	1 cut(s)	79
AjnI	CCWGG	3 cut(s)	755, 902, 936
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AloI	GAACNNNNNNTCC	2 cut(s)	65, 97
AluBI	AGCT	6 cut(s)	135, 235, 412, 525, 532, 742
AluI	AGCT	6 cut(s)	135, 235, 412, 525, 532, 742
Alw26I	GTCTC	6 cut(s)	59, 596, 798, 824, 862, 901
AlwI	GGATC	1 cut(s)	38
AlwNI	CAGNNNCTG	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	889
AoxI	GGCC	1 cut(s)	733
ApoI	RAATTY	1 cut(s)	809
Asp700I	GAANNNNTTC	1 cut(s)	716
AspA2I	CCTAGG	1 cut(s)	241
AspLEI	GCGC	2 cut(s)	230, 817
AspS9I	GGNCC	2 cut(s)	795, 893
AvaI	CYCGRG	1 cut(s)	889
AvaII	GGWCC	2 cut(s)	795, 893
AvrII	CCTAGG	1 cut(s)	241
BauI	CACGAG	2 cut(s)	188, 335
BcgI	CGANNNNNNTGC	2 cut(s)	734, 768
BciT130I	CCWGG	3 cut(s)	757, 904, 938
BciVI	GTATCC	1 cut(s)	500
BcoDI	GTCTC	6 cut(s)	59, 596, 798, 824, 862, 901
BfaI	CTAG	3 cut(s)	242, 413, 503
BfrI	CTTAAG	1 cut(s)	980
BfuI	GTATCC	1 cut(s)	500
BisI	GCNGC	1 cut(s)	626
BlnI	CCTAGG	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	627
Bme1390I	CCNGG	3 cut(s)	757, 904, 938
Bme18I	GGWCC	2 cut(s)	795, 893
BmeT110I	CYCGRG	1 cut(s)	889
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	795, 893
BmiI	GGNNCC	2 cut(s)	620, 894
BmrFI	CCNGG	3 cut(s)	757, 904, 938
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	2 cut(s)	696, 742
BmuI	ACTGGG	1 cut(s)	276
BpmI	CTGGAG	2 cut(s)	605, 925
Bsa29I	ATCGAT	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	862
BsaJI	CCNNGG	6 cut(s)	241, 282, 572, 756, 921, 937
Bsc4I	CCNNNNNNNGG	5 cut(s)	224, 414, 847, 922, 927
Bse1I	ACTGG	3 cut(s)	271, 374, 497
Bse3DI	GCAATG	2 cut(s)	184, 356
BseBI	CCWGG	3 cut(s)	757, 904, 938
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	6 cut(s)	241, 282, 572, 756, 921, 937
BseGI	GGATG	2 cut(s)	213, 307
BseLI	CCNNNNNNNGG	5 cut(s)	224, 414, 847, 922, 927
BseMI	GCAATG	2 cut(s)	184, 356
BseMII	CTCAG	2 cut(s)	150, 935
BseNI	ACTGG	3 cut(s)	271, 374, 497
BseRI	GAGGAG	1 cut(s)	359
BseYI	CCCAGC	1 cut(s)	916
BsgI	GTGCAG	1 cut(s)	354
Bsh1236I	CGCG	1 cut(s)	817
BshFI	GGCC	1 cut(s)	735
BshVI	ATCGAT	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	889
BslFI	GGGAC	2 cut(s)	283, 906
BslI	CCNNNNNNNGG	5 cut(s)	224, 414, 847, 922, 927
BsmAI	GTCTC	6 cut(s)	59, 596, 798, 824, 862, 901
BsmBI	CGTCTC	2 cut(s)	596, 824
BsmFI	GGGAC	2 cut(s)	283, 906
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	1 cut(s)	735
Bso31I	GGTCTC	1 cut(s)	862
BsoBI	CYCGRG	1 cut(s)	889
Bsp143I	GATC	2 cut(s)	30, 519
Bsp19I	CCATGG	1 cut(s)	572
BspACI	CCGC	3 cut(s)	106, 626, 975
BspANI	GGCC	1 cut(s)	735
BspCNI	CTCAG	2 cut(s)	149, 936
BspDI	ATCGAT	1 cut(s)	33
BspFNI	CGCG	1 cut(s)	817
BspLI	GGNNCC	2 cut(s)	620, 894
BspPI	GGATC	1 cut(s)	38
BspTI	CTTAAG	1 cut(s)	980
BspTNI	GGTCTC	1 cut(s)	862
BsrBI	CCGCTC	1 cut(s)	977
BsrDI	GCAATG	2 cut(s)	184, 356
BsrI	ACTGG	3 cut(s)	271, 374, 497
BssECI	CCNNGG	6 cut(s)	241, 282, 572, 756, 921, 937
BssMI	GATC	2 cut(s)	30, 519
BssSI	CACGAG	2 cut(s)	188, 335
BssT1I	CCWWGG	2 cut(s)	241, 572
Bst2BI	CACGAG	2 cut(s)	188, 335
Bst2UI	CCWGG	3 cut(s)	757, 904, 938
Bst4CI	ACNGT	4 cut(s)	53, 286, 478, 799
Bst6I	CTCTTC	2 cut(s)	680, 707
BstAFI	CTTAAG	1 cut(s)	980
BstC8I	GCNNGC	3 cut(s)	104, 441, 454
BstDEI	CTNAG	3 cut(s)	136, 355, 944
BstDSI	CCRYGG	2 cut(s)	282, 572
BstF5I	GGATG	2 cut(s)	213, 307
BstFNI	CGCG	1 cut(s)	817
BstHHI	GCGC	2 cut(s)	230, 817
BstKTI	GATC	2 cut(s)	33, 522
BstMAI	GTCTC	6 cut(s)	59, 596, 798, 824, 862, 901
BstMBI	GATC	2 cut(s)	30, 519
BstMWI	GCNNNNNNNGC	4 cut(s)	449, 548, 625, 974
BstNI	CCWGG	3 cut(s)	757, 904, 938
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	3 cut(s)	755, 902, 936
BstUI	CGCG	1 cut(s)	817
BstXI	CCANNNNNNTGG	2 cut(s)	763, 779
Bsu15I	ATCGAT	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	735
BsuTUI	ATCGAT	1 cut(s)	33
BtgI	CCRYGG	2 cut(s)	282, 572
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	213, 307
BtsIMutI	CAGTG	2 cut(s)	144, 504
Cac8I	GCNNGC	3 cut(s)	104, 441, 454
CaiI	CAGNNNCTG	1 cut(s)	542
CfoI	GCGC	2 cut(s)	230, 817
Cfr13I	GGNCC	2 cut(s)	795, 893
ClaI	ATCGAT	1 cut(s)	33
CseI	GACGC	1 cut(s)	806
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	4 cut(s)	41, 573, 593, 615
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	3 cut(s)	136, 355, 944
DpnI	GATC	2 cut(s)	32, 521
DpnII	GATC	2 cut(s)	30, 519
DraI	TTTAAA	1 cut(s)	958
Eam1104I	CTCTTC	2 cut(s)	680, 707
EarI	CTCTTC	2 cut(s)	680, 707
Eco130I	CCWWGG	2 cut(s)	241, 572
Eco147I	AGGCCT	1 cut(s)	735
Eco31I	GGTCTC	1 cut(s)	862
Eco47I	GGWCC	2 cut(s)	795, 893
Eco57I	CTGAAG	1 cut(s)	722
Eco88I	CYCGRG	1 cut(s)	889
EcoO109I	RGGNCCY	1 cut(s)	893
EcoRII	CCWGG	3 cut(s)	755, 902, 936
EcoT14I	CCWWGG	2 cut(s)	241, 572
ErhI	CCWWGG	2 cut(s)	241, 572
Esp3I	CGTCTC	2 cut(s)	596, 824
FaeI	CATG	4 cut(s)	44, 576, 596, 618
FaqI	GGGAC	2 cut(s)	283, 906
FatI	CATG	4 cut(s)	40, 572, 592, 614
Fnu4HI	GCNGC	1 cut(s)	626
FokI	GGATG	2 cut(s)	220, 314
Fsp4HI	GCNGC	1 cut(s)	626
FspBI	CTAG	3 cut(s)	242, 413, 503
GlaI	GCGC	2 cut(s)	229, 816
GluI	GCNGC	1 cut(s)	626
GsaI	CCCAGC	1 cut(s)	920
GsuI	CTGGAG	2 cut(s)	605, 925
HaeIII	GGCC	1 cut(s)	735
HgaI	GACGC	1 cut(s)	806
HhaI	GCGC	2 cut(s)	230, 817
Hin1II	CATG	4 cut(s)	44, 576, 596, 618
Hin6I	GCGC	2 cut(s)	228, 815
HinP1I	GCGC	2 cut(s)	228, 815
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	5 cut(s)	650, 717, 787, 865, 933
HpaI	GTTAAC	1 cut(s)	565
Hpy166II	GTNNAC	2 cut(s)	73, 565
Hpy188I	TCNGA	5 cut(s)	409, 538, 803, 862, 945
Hpy188III	TCNNGA	5 cut(s)	58, 188, 841, 869, 891
Hpy8I	GTNNAC	2 cut(s)	73, 565
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	13, 746
HpyCH4III	ACNGT	4 cut(s)	53, 286, 478, 799
HpyCH4IV	ACGT	2 cut(s)	78, 318
HpyCH4V	TGCA	6 cut(s)	94, 199, 259, 371, 661, 709
HpyF10VI	GCNNNNNNNGC	4 cut(s)	449, 548, 625, 974
HpyF3I	CTNAG	3 cut(s)	136, 355, 944
HpySE526I	ACGT	2 cut(s)	78, 318
Hsp92II	CATG	4 cut(s)	44, 576, 596, 618
HspAI	GCGC	2 cut(s)	228, 815
KspAI	GTTAAC	1 cut(s)	565
Kzo9I	GATC	2 cut(s)	30, 519
LmnI	GCTCC	2 cut(s)	346, 624
LweI	GCATC	2 cut(s)	696, 742
MaeI	CTAG	3 cut(s)	242, 413, 503
MaeII	ACGT	2 cut(s)	78, 318
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	2 cut(s)	32, 521
MbiI	CCGCTC	1 cut(s)	977
MboI	GATC	2 cut(s)	30, 519
MboII	GAAGA	3 cut(s)	581, 697, 724
MluCI	AATT	2 cut(s)	809, 969
MlyI	GAGTC	3 cut(s)	644, 781, 942
MroXI	GAANNNNTTC	1 cut(s)	716
MseI	TTAA	3 cut(s)	564, 957, 981
MslI	CAYNNNNRTG	1 cut(s)	827
MspCI	CTTAAG	1 cut(s)	980
MspR9I	CCNGG	3 cut(s)	757, 904, 938
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	3 cut(s)	757, 904, 938
MvnI	CGCG	1 cut(s)	817
MwoI	GCNNNNNNNGC	4 cut(s)	449, 548, 625, 974
NcoI	CCATGG	1 cut(s)	572
NdeII	GATC	2 cut(s)	30, 519
NlaIII	CATG	4 cut(s)	44, 576, 596, 618
NlaIV	GGNNCC	2 cut(s)	620, 894
NmeAIII	GCCGAG	1 cut(s)	946
NmuCI	GTSAC	1 cut(s)	478
NspI	RCATGY	1 cut(s)	44
PceI	AGGCCT	1 cut(s)	735
PciI	ACATGT	1 cut(s)	40
PctI	GAATGC	1 cut(s)	454
PdmI	GAANNNNTTC	1 cut(s)	716
PfeI	GAWTC	2 cut(s)	717, 865
PflMI	CCANNNNNTGG	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	627
PleI	GAGTC	3 cut(s)	644, 781, 941
PpsI	GAGTC	3 cut(s)	644, 781, 941
PpuMI	RGGWCCY	1 cut(s)	893
PscI	ACATGT	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	893
Psp6I	CCWGG	3 cut(s)	755, 902, 936
PspFI	CCCAGC	1 cut(s)	916
PspGI	CCWGG	3 cut(s)	755, 902, 936
PspN4I	GGNNCC	2 cut(s)	620, 894
PspPI	GGNCC	2 cut(s)	795, 893
PspPPI	RGGWCCY	1 cut(s)	893
PstNI	CAGNNNCTG	1 cut(s)	542
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	827
SaqAI	TTAA	3 cut(s)	564, 957, 981
SatI	GCNGC	1 cut(s)	626
Sau3AI	GATC	2 cut(s)	30, 519
Sau96I	GGNCC	2 cut(s)	795, 893
SchI	GAGTC	3 cut(s)	644, 781, 942
ScrFI	CCNGG	3 cut(s)	757, 904, 938
SfaNI	GCATC	2 cut(s)	696, 742
SinI	GGWCC	2 cut(s)	795, 893
SmiMI	CAYNNNNRTG	1 cut(s)	827
SmlI	CTYRAG	1 cut(s)	980
SmoI	CTYRAG	1 cut(s)	980
Sse9I	AATT	2 cut(s)	809, 969
SseBI	AGGCCT	1 cut(s)	735
SsiI	CCGC	3 cut(s)	106, 626, 975
SspMI	CTAG	3 cut(s)	242, 413, 503
StuI	AGGCCT	1 cut(s)	735
StyD4I	CCNGG	3 cut(s)	755, 902, 936
StyI	CCWWGG	2 cut(s)	241, 572
TaaI	ACNGT	4 cut(s)	53, 286, 478, 799
TaiI	ACGT	2 cut(s)	81, 321
TaqI	TCGA	3 cut(s)	33, 672, 744
TasI	AATT	2 cut(s)	809, 969
TauI	GCSGC	1 cut(s)	628
TfiI	GAWTC	2 cut(s)	717, 865
Tru1I	TTAA	3 cut(s)	564, 957, 981
Tru9I	TTAA	3 cut(s)	564, 957, 981
TscAI	CASTG	2 cut(s)	144, 504
TseFI	GTSAC	1 cut(s)	478
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	3 cut(s)	51, 581, 667
TspGWI	ACGGA	2 cut(s)	287, 482
TspRI	CASTG	2 cut(s)	144, 504
Van91I	CCANNNNNTGG	1 cut(s)	224
Vha464I	CTTAAG	1 cut(s)	980
VpaK11BI	GGWCC	2 cut(s)	795, 893
XapI	RAATTY	1 cut(s)	809
XceI	RCATGY	1 cut(s)	44
XmaJI	CCTAGG	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	716
XspI	CTAG	3 cut(s)	242, 413, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.