pycom07g15620

Conserved oligomeric Golgi complex subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
18068787 .. 18071227
2441 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g15620.2

Sequence Viewer

Length: 1158 bp
ATGCAGTTGGGTGAGGATTACACTGAGTTCATGGTGTCTAAGATCAAGGGCTTGACGAATGTTGACCCGGATTTAGGTCCACGAGCCACTAAGGCTTTTAGGAGTGGAAGTTTTAGCAAGGTGGTTCAGGACATTACCGGGTTTTATGTCATATTAGAAGGTTTCTTTATGGTGGAGAATGTGAGGAAGGCTATAAGGATCGATGAGCATGTGCCTGACAGTCTCACGACTTCAATGGTGGACGACGTGTTCTATGTTTTGCAGAGTTGCTTGCGGAGGGCAATATCCACTTTGAATATCAGCTCAGTGATTGCTGTGTTGAGTGGTGCAAGTAGCTTGTTGAGCAATGAGTATCACGAGGCTTTGCAAGAGAGGATGAGAGAGCCAAATCTTGGCGCAAAGCTGTTCCTAGGTGGTGTTGGGGTGCAAAAAACTGGGACGGAGATTGCCACGGTTTTGAATAATATGGATGTCAGTAGCGAGTACGTCCTCAAACTAAAGCACGAGATTGAGGAGCAATGCTTAGAGGTGTTTCCTGCACCAGTTGATAGAGAAAAAGTGAAGTCTTGCCTGTCCGAGCTAGGGGATATGAGCAGCACATTCAAGCAAGCGTTGAATGCTGGCTTGGAACAACTTGTGGCTACTGTGACACCCCGTATCCGTCCAGTGCTAGATAATGTGGCAACGATCAGCTATGAGCTATCAGAGGCTGAATACGCAGATAATGAGGTTAACGACCCATGGGTTCAAAGACTTCTTCATGCTGTTGAGACGAATGTAGCATGGCTCCAGCCGCTAATGACTGCCAACAACTACGACTCATTTGTGCATTTTGTCATCGACTTCATTGTGAAGAGGCTTGAAGTGATTATGATGCAGAAGAGATTCAGCCAACTTGGAGGCCTTCAGCTCGACAGAGATGCCAGGGCATTGGTAAGCCACTTCTCTAGTATGACTCAAAGGACCGTCAGAGACAAATTTGCGCGTCTCACACAAATGGCGACAATCCTGAACTTGGAAAAGGTCTCGGAGATTCTTGATTTCTGGGGCGAGAACTCGGGACCTATGACCTGGAGACTGACCCCAGCCGAGGTCAGGCGAGTCCTGGGTCTGAGAGTTGATTTTAAACCAGAAGCAATTTCCGCTCTGAAGTTGTAA

Protein Analysis

386

Amino Acids

43.28

Weight (kDa)

5.36

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 392
AccBSI CCGCTC 1 cut(s) 1145
AccII CGCG 1 cut(s) 985
AciI CCGC 3 cut(s) 274, 794, 1143
AclWI GGATC 1 cut(s) 206
AcsI RAATTY 1 cut(s) 977
AcuI CTGAAG 1 cut(s) 890
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 6 cut(s) 74, 392, 582, 1015, 1090, 1095
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 7 cut(s) 234, 295, 460, 604, 616, 749, 863
AjiI CACGTC 1 cut(s) 247
AjnI CCWGG 3 cut(s) 923, 1070, 1104
AjuI GAANNNNNNNTTGG 2 cut(s) 608, 640
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 7 cut(s) 303, 336, 403, 580, 693, 700, 910
AluI AGCT 7 cut(s) 303, 336, 403, 580, 693, 700, 910
Alw26I GTCTC 6 cut(s) 227, 764, 966, 992, 1030, 1069
AlwI GGATC 1 cut(s) 206
AlwNI CAGNNNCTG 1 cut(s) 710
Ama87I CYCGRG 1 cut(s) 1057
AoxI GGCC 1 cut(s) 901
ApeKI GCWGC 1 cut(s) 594
ApoI RAATTY 1 cut(s) 977
Asp700I GAANNNNTTC 1 cut(s) 884
AspA2I CCTAGG 1 cut(s) 409
AspLEI GCGC 2 cut(s) 398, 985
AspS9I GGNCC 3 cut(s) 77, 963, 1061
AsuC2I CCSGG 2 cut(s) 68, 139
AsuHPI GGTGA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 1057
AvaII GGWCC 3 cut(s) 77, 963, 1061
AvrII CCTAGG 1 cut(s) 409
BauI CACGAG 3 cut(s) 81, 356, 503
BbvI GCAGC 1 cut(s) 606
BcgI CGANNNNNNTGC 2 cut(s) 902, 936
BciT130I CCWGG 3 cut(s) 925, 1072, 1106
BciVI GTATCC 1 cut(s) 668
BcnI CCSGG 2 cut(s) 68, 139
BcoDI GTCTC 6 cut(s) 227, 764, 966, 992, 1030, 1069
BfaI CTAG 4 cut(s) 410, 581, 671, 948
BfuI GTATCC 1 cut(s) 668
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 2 cut(s) 595, 794
BlnI CCTAGG 1 cut(s) 409
BlsI GCNGC 2 cut(s) 596, 795
Bme1390I CCNGG 5 cut(s) 68, 139, 925, 1072, 1106
Bme18I GGWCC 3 cut(s) 77, 963, 1061
BmeT110I CYCGRG 1 cut(s) 1057
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 3 cut(s) 77, 963, 1061
BmiI GGNNCC 2 cut(s) 788, 1062
BmrFI CCNGG 5 cut(s) 68, 139, 925, 1072, 1106
BmrI ACTGGG 1 cut(s) 444
BmsI GCATC 2 cut(s) 864, 910
BmuI ACTGGG 1 cut(s) 444
BpmI CTGGAG 2 cut(s) 773, 1093
BpuMI CCSGG 2 cut(s) 68, 139
Bsa29I ATCGAT 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 1030
BsaJI CCNNGG 6 cut(s) 409, 450, 740, 924, 1089, 1105
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 6 cut(s) 74, 392, 582, 1015, 1090, 1095
Bse1I ACTGG 3 cut(s) 439, 542, 665
Bse3DI GCAATG 2 cut(s) 352, 524
BseBI CCWGG 3 cut(s) 925, 1072, 1106
BseCI ATCGAT 1 cut(s) 201
BseDI CCNNGG 6 cut(s) 409, 450, 740, 924, 1089, 1105
BseGI GGATG 2 cut(s) 381, 475
BseLI CCNNNNNNNGG 6 cut(s) 74, 392, 582, 1015, 1090, 1095
BseMI GCAATG 2 cut(s) 352, 524
BseMII CTCAG 3 cut(s) 15, 318, 1103
BseNI ACTGG 3 cut(s) 439, 542, 665
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 1 cut(s) 606
BseYI CCCAGC 1 cut(s) 1084
BsgI GTGCAG 1 cut(s) 522
Bsh1236I CGCG 1 cut(s) 985
BshFI GGCC 1 cut(s) 903
BshVI ATCGAT 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 1057
BsiSI CCGG 2 cut(s) 68, 138
BslFI GGGAC 2 cut(s) 451, 1074
BslI CCNNNNNNNGG 6 cut(s) 74, 392, 582, 1015, 1090, 1095
BsmAI GTCTC 6 cut(s) 227, 764, 966, 992, 1030, 1069
BsmBI CGTCTC 2 cut(s) 764, 992
BsmFI GGGAC 2 cut(s) 451, 1074
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 1 cut(s) 903
Bso31I GGTCTC 1 cut(s) 1030
BsoBI CYCGRG 1 cut(s) 1057
Bsp143I GATC 3 cut(s) 42, 198, 687
Bsp19I CCATGG 1 cut(s) 740
BspACI CCGC 3 cut(s) 274, 794, 1143
BspANI GGCC 1 cut(s) 903
BspCNI CTCAG 3 cut(s) 16, 317, 1104
BspDI ATCGAT 1 cut(s) 201
BspFNI CGCG 1 cut(s) 985
BspLI GGNNCC 2 cut(s) 788, 1062
BspPI GGATC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 1030
BsrBI CCGCTC 1 cut(s) 1145
BsrDI GCAATG 2 cut(s) 352, 524
BsrI ACTGG 3 cut(s) 439, 542, 665
BssECI CCNNGG 6 cut(s) 409, 450, 740, 924, 1089, 1105
BssMI GATC 3 cut(s) 42, 198, 687
BssSI CACGAG 3 cut(s) 81, 356, 503
BssT1I CCWWGG 2 cut(s) 409, 740
Bst2BI CACGAG 3 cut(s) 81, 356, 503
Bst2UI CCWGG 3 cut(s) 925, 1072, 1106
Bst4CI ACNGT 4 cut(s) 221, 454, 646, 967
Bst6I CTCTTC 2 cut(s) 848, 875
BstC8I GCNNGC 3 cut(s) 272, 609, 622
BstDEI CTNAG 6 cut(s) 24, 39, 90, 304, 523, 1112
BstDSI CCRYGG 2 cut(s) 450, 740
BstF5I GGATG 2 cut(s) 381, 475
BstFNI CGCG 1 cut(s) 985
BstHHI GCGC 2 cut(s) 398, 985
BstKTI GATC 3 cut(s) 45, 201, 690
BstMAI GTCTC 6 cut(s) 227, 764, 966, 992, 1030, 1069
BstMBI GATC 3 cut(s) 42, 198, 687
BstMWI GCNNNNNNNGC 6 cut(s) 92, 342, 617, 716, 793, 1142
BstNI CCWGG 3 cut(s) 925, 1072, 1106
BstNSI RCATGY 1 cut(s) 212
BstSCI CCNGG 5 cut(s) 66, 137, 923, 1070, 1104
BstUI CGCG 1 cut(s) 985
BstV1I GCAGC 1 cut(s) 606
BstXI CCANNNNNNTGG 1 cut(s) 931
Bsu15I ATCGAT 1 cut(s) 201
BsuI GTATCC 1 cut(s) 668
BsuRI GGCC 1 cut(s) 903
BsuTUI ATCGAT 1 cut(s) 201
BtgI CCRYGG 2 cut(s) 450, 740
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 2 cut(s) 381, 475
BtsIMutI CAGTG 3 cut(s) 21, 312, 672
Cac8I GCNNGC 3 cut(s) 272, 609, 622
CaiI CAGNNNCTG 1 cut(s) 710
CfoI GCGC 2 cut(s) 398, 985
Cfr13I GGNCC 3 cut(s) 77, 963, 1061
ClaI ATCGAT 1 cut(s) 201
CseI GACGC 1 cut(s) 974
Csp6I GTAC 1 cut(s) 484
CviAII CATG 5 cut(s) 31, 209, 741, 761, 783
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 6 cut(s) 24, 39, 90, 304, 523, 1112
DpnI GATC 3 cut(s) 44, 200, 689
DpnII GATC 3 cut(s) 42, 198, 687
DraI TTTAAA 1 cut(s) 1126
Eam1104I CTCTTC 2 cut(s) 848, 875
EarI CTCTTC 2 cut(s) 848, 875
Eco130I CCWWGG 2 cut(s) 409, 740
Eco147I AGGCCT 1 cut(s) 903
Eco31I GGTCTC 1 cut(s) 1030
Eco47I GGWCC 3 cut(s) 77, 963, 1061
Eco57I CTGAAG 1 cut(s) 890
Eco88I CYCGRG 1 cut(s) 1057
EcoO109I RGGNCCY 1 cut(s) 1061
EcoRII CCWGG 3 cut(s) 923, 1070, 1104
EcoT14I CCWWGG 2 cut(s) 409, 740
ErhI CCWWGG 2 cut(s) 409, 740
Esp3I CGTCTC 2 cut(s) 764, 992
FaeI CATG 5 cut(s) 34, 212, 744, 764, 786
FaqI GGGAC 2 cut(s) 451, 1074
FatI CATG 5 cut(s) 30, 208, 740, 760, 782
Fnu4HI GCNGC 2 cut(s) 595, 794
FokI GGATG 2 cut(s) 388, 482
Fsp4HI GCNGC 2 cut(s) 595, 794
FspBI CTAG 4 cut(s) 410, 581, 671, 948
GlaI GCGC 2 cut(s) 397, 984
GluI GCNGC 2 cut(s) 595, 794
GsaI CCCAGC 1 cut(s) 1088
GsuI CTGGAG 2 cut(s) 773, 1093
HaeIII GGCC 1 cut(s) 903
HapII CCGG 2 cut(s) 68, 138
HgaI GACGC 1 cut(s) 974
HhaI GCGC 2 cut(s) 398, 985
Hin1II CATG 5 cut(s) 34, 212, 744, 764, 786
Hin6I GCGC 2 cut(s) 396, 983
HinP1I GCGC 2 cut(s) 396, 983
HincII GTYRAC 2 cut(s) 64, 733
HindII GTYRAC 2 cut(s) 64, 733
HinfI GANTC 5 cut(s) 818, 885, 955, 1033, 1101
HpaI GTTAAC 1 cut(s) 733
HpaII CCGG 2 cut(s) 68, 138
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 4 cut(s) 64, 80, 241, 733
Hpy188I TCNGA 6 cut(s) 577, 706, 971, 1030, 1113, 1149
Hpy188III TCNNGA 6 cut(s) 128, 226, 356, 1009, 1037, 1059
Hpy8I GTNNAC 4 cut(s) 64, 80, 241, 733
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 152, 181, 914
HpyCH4III ACNGT 4 cut(s) 221, 454, 646, 967
HpyCH4IV ACGT 2 cut(s) 246, 486
HpyCH4V TGCA 8 cut(s) 4, 262, 329, 367, 427, 539, 829, 877
HpyF10VI GCNNNNNNNGC 6 cut(s) 92, 342, 617, 716, 793, 1142
HpyF3I CTNAG 6 cut(s) 24, 39, 90, 304, 523, 1112
HpySE526I ACGT 2 cut(s) 246, 486
Hsp92II CATG 5 cut(s) 34, 212, 744, 764, 786
HspAI GCGC 2 cut(s) 396, 983
KspAI GTTAAC 1 cut(s) 733
Kzo9I GATC 3 cut(s) 42, 198, 687
LmnI GCTCC 2 cut(s) 514, 792
Lsp1109I GCAGC 1 cut(s) 606
LweI GCATC 2 cut(s) 864, 910
MaeI CTAG 4 cut(s) 410, 581, 671, 948
MaeII ACGT 2 cut(s) 246, 486
MaeIII GTNAC 1 cut(s) 646
MalI GATC 3 cut(s) 44, 200, 689
MbiI CCGCTC 1 cut(s) 1145
MboI GATC 3 cut(s) 42, 198, 687
MboII GAAGA 3 cut(s) 749, 865, 892
MluCI AATT 2 cut(s) 977, 1137
MlyI GAGTC 3 cut(s) 812, 949, 1110
MroXI GAANNNNTTC 1 cut(s) 884
MseI TTAA 2 cut(s) 732, 1125
MslI CAYNNNNRTG 1 cut(s) 995
MspI CCGG 2 cut(s) 68, 138
MspR9I CCNGG 5 cut(s) 68, 139, 925, 1072, 1106
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 3 cut(s) 925, 1072, 1106
MvnI CGCG 1 cut(s) 985
MwoI GCNNNNNNNGC 6 cut(s) 92, 342, 617, 716, 793, 1142
NciI CCSGG 2 cut(s) 68, 139
NcoI CCATGG 1 cut(s) 740
NdeII GATC 3 cut(s) 42, 198, 687
NlaIII CATG 5 cut(s) 34, 212, 744, 764, 786
NlaIV GGNNCC 2 cut(s) 788, 1062
NmeAIII GCCGAG 1 cut(s) 1114
NmuCI GTSAC 1 cut(s) 646
NspI RCATGY 1 cut(s) 212
PceI AGGCCT 1 cut(s) 903
PctI GAATGC 1 cut(s) 622
PdmI GAANNNNTTC 1 cut(s) 884
PfeI GAWTC 2 cut(s) 885, 1033
PflMI CCANNNNNTGG 1 cut(s) 392
PkrI GCNGC 2 cut(s) 596, 795
PleI GAGTC 3 cut(s) 812, 949, 1109
PpsI GAGTC 3 cut(s) 812, 949, 1109
PpuMI RGGWCCY 1 cut(s) 1061
Psp5II RGGWCCY 1 cut(s) 1061
Psp6I CCWGG 3 cut(s) 923, 1070, 1104
PspFI CCCAGC 1 cut(s) 1084
PspGI CCWGG 3 cut(s) 923, 1070, 1104
PspN4I GGNNCC 2 cut(s) 788, 1062
PspPI GGNCC 3 cut(s) 77, 963, 1061
PspPPI RGGWCCY 1 cut(s) 1061
PstNI CAGNNNCTG 1 cut(s) 710
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
RseI CAYNNNNRTG 1 cut(s) 995
SaqAI TTAA 2 cut(s) 732, 1125
SatI GCNGC 2 cut(s) 595, 794
Sau3AI GATC 3 cut(s) 42, 198, 687
Sau96I GGNCC 3 cut(s) 77, 963, 1061
SchI GAGTC 3 cut(s) 812, 949, 1110
ScrFI CCNGG 5 cut(s) 68, 139, 925, 1072, 1106
SfaNI GCATC 2 cut(s) 864, 910
SinI GGWCC 3 cut(s) 77, 963, 1061
SmiMI CAYNNNNRTG 1 cut(s) 995
Sse9I AATT 2 cut(s) 977, 1137
SseBI AGGCCT 1 cut(s) 903
SsiI CCGC 3 cut(s) 274, 794, 1143
SspMI CTAG 4 cut(s) 410, 581, 671, 948
StuI AGGCCT 1 cut(s) 903
StyD4I CCNGG 5 cut(s) 66, 137, 923, 1070, 1104
StyI CCWWGG 2 cut(s) 409, 740
TaaI ACNGT 4 cut(s) 221, 454, 646, 967
TaiI ACGT 2 cut(s) 249, 489
TaqI TCGA 3 cut(s) 201, 840, 912
TasI AATT 2 cut(s) 977, 1137
TauI GCSGC 1 cut(s) 796
TfiI GAWTC 2 cut(s) 885, 1033
Tru1I TTAA 2 cut(s) 732, 1125
Tru9I TTAA 2 cut(s) 732, 1125
TscAI CASTG 3 cut(s) 28, 312, 672
TseFI GTSAC 1 cut(s) 646
TseI GCWGC 1 cut(s) 594
Tsp45I GTSAC 1 cut(s) 646
TspDTI ATGAA 3 cut(s) 19, 749, 835
TspGWI ACGGA 2 cut(s) 455, 650
TspRI CASTG 3 cut(s) 28, 312, 672
Van91I CCANNNNNTGG 1 cut(s) 392
VpaK11BI GGWCC 3 cut(s) 77, 963, 1061
XapI RAATTY 1 cut(s) 977
XceI RCATGY 1 cut(s) 212
XmaJI CCTAGG 1 cut(s) 409
XmnI GAANNNNTTC 1 cut(s) 884
XspI CTAG 4 cut(s) 410, 581, 671, 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.