Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012270.1

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Forward (+)

14456 .. 15435

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012270.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atggcagctctagcagcccatttatccatgacgcgcctcctccacgagtgcatagcctaccaacgcgccctggatctcaacctcgaccacctcctctcccagcgcttcgacctcgacaagctcctctccaatctccataattcctcccaggtcctcgacatcgtcaagtctgacgccgaccacgtcctctccaacgtctcctccacctgcgacctcgccgaccatatgtccgggaagctcaaagctccacgccgaaatcggacgccggaatccggtcaccagtccagtagccggattccgatgaccggtagcaggattccggttatcgattgctggattccagtcaccggtagctggattcaggtcatcggtcggctgagtcgggtcaccggaccgccaccggagtcaagcaaggtggtctccaatgacttctttctcaaagtgacaaagaagaagatggcaaaattgtcccaaaataaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

160

Amino Acids

17.74

Weight (kDa)

9.62

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	215
Acc36I	ACCTGC	1 cut(s)	215
AccII	CGCG	2 cut(s)	34, 66
AciI	CCGC	1 cut(s)	395
AclWI	GGATC	1 cut(s)	81
AcyI	GRCGYC	2 cut(s)	174, 263
AfeI	AGCGCT	1 cut(s)	104
AfiI	CCNNNNNNNGG	6 cut(s)	272, 291, 305, 312, 347, 354
AgeI	ACCGGT	2 cut(s)	305, 347
AhdI	GACNNNNNGTC	1 cut(s)	226
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	2 cut(s)	69, 147
AluBI	AGCT	5 cut(s)	8, 121, 238, 245, 354
AluI	AGCT	5 cut(s)	8, 121, 238, 245, 354
Alw26I	GTCTC	2 cut(s)	202, 424
AlwI	GGATC	1 cut(s)	81
Aor51HI	AGCGCT	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	5, 14
AsiGI	ACCGGT	2 cut(s)	305, 347
AspLEI	GCGC	3 cut(s)	36, 68, 105
AspS9I	GGNCC	2 cut(s)	151, 392
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	3 cut(s)	269, 337, 379
AvaII	GGWCC	2 cut(s)	151, 392
BauI	CACGAG	1 cut(s)	44
BbvI	GCAGC	2 cut(s)	17, 26
BccI	CCATC	1 cut(s)	451
BciT130I	CCWGG	2 cut(s)	71, 149
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	202, 424
BfaI	CTAG	1 cut(s)	11
BfoI	RGCGCY	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	215
BisI	GCNGC	2 cut(s)	6, 15
BlsI	GCNGC	2 cut(s)	7, 16
Bme1390I	CCNGG	3 cut(s)	71, 149, 232
Bme18I	GGWCC	2 cut(s)	151, 392
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	151, 392
BmrFI	CCNGG	3 cut(s)	71, 149, 232
BpuMI	CCSGG	1 cut(s)	232
Bsa29I	ATCGAT	1 cut(s)	327
BsaHI	GRCGYC	2 cut(s)	174, 263
BsaI	GGTCTC	1 cut(s)	424
BsaJI	CCNNGG	2 cut(s)	69, 147
BsaWI	WCCGGW	6 cut(s)	272, 305, 319, 347, 389, 400
BsaXI	ACNNNNNCTCC	6 cut(s)	80, 110, 173, 185, 203, 215
Bsc4I	CCNNNNNNNGG	6 cut(s)	272, 291, 305, 312, 347, 354
Bse118I	RCCGGY	2 cut(s)	305, 347
Bse1I	ACTGG	3 cut(s)	280, 285, 341
BseBI	CCWGG	2 cut(s)	71, 149
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	69, 147
BseLI	CCNNNNNNNGG	6 cut(s)	272, 291, 305, 312, 347, 354
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	3 cut(s)	280, 285, 341
BseRI	GAGGAG	4 cut(s)	29, 83, 113, 190
BseXI	GCAGC	2 cut(s)	17, 26
BseYI	CCCAGC	1 cut(s)	99
Bsh1236I	CGCG	2 cut(s)	34, 66
Bsh1285I	CGRYCG	1 cut(s)	373
BshTI	ACCGGT	2 cut(s)	305, 347
BshVI	ATCGAT	1 cut(s)	327
BsiEI	CGRYCG	1 cut(s)	373
BsiSI	CCGG	9 cut(s)	231, 266, 273, 292, 306, 320, 348, 390, 401
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	6 cut(s)	272, 291, 305, 312, 347, 354
BsmAI	GTCTC	2 cut(s)	202, 424
BsmBI	CGTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	454
Bso31I	GGTCTC	1 cut(s)	424
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	1 cut(s)	395
BspCNI	CTCAG	1 cut(s)	369
BspDI	ATCGAT	1 cut(s)	327
BspFNI	CGCG	2 cut(s)	34, 66
BspMI	ACCTGC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	424
BsrFI	RCCGGY	2 cut(s)	305, 347
BsrI	ACTGG	3 cut(s)	280, 285, 341
BssAI	RCCGGY	2 cut(s)	305, 347
BssECI	CCNNGG	2 cut(s)	69, 147
BssMI	GATC	1 cut(s)	73
BssNI	GRCGYC	2 cut(s)	174, 263
BssSI	CACGAG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	2 cut(s)	71, 149
BstACI	GRCGYC	2 cut(s)	174, 263
BstDEI	CTNAG	1 cut(s)	377
BstEII	GGTNACC	2 cut(s)	275, 385
BstFNI	CGCG	2 cut(s)	34, 66
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	3 cut(s)	36, 68, 105
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	2 cut(s)	202, 424
BstMBI	GATC	1 cut(s)	73
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 14
BstNI	CCWGG	2 cut(s)	71, 149
BstPI	GGTNACC	2 cut(s)	275, 385
BstSCI	CCNGG	3 cut(s)	69, 147, 230
BstUI	CGCG	2 cut(s)	34, 66
BstV1I	GCAGC	2 cut(s)	17, 26
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
Bsu15I	ATCGAT	1 cut(s)	327
BsuTUI	ATCGAT	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	184
BveI	ACCTGC	1 cut(s)	215
CfoI	GCGC	3 cut(s)	36, 68, 105
Cfr10I	RCCGGY	2 cut(s)	305, 347
Cfr13I	GGNCC	2 cut(s)	151, 392
ClaI	ATCGAT	1 cut(s)	327
CpoI	CGGWCCG	1 cut(s)	392
CseI	GACGC	3 cut(s)	40, 182, 271
CspAI	ACCGGT	2 cut(s)	305, 347
CspCI	CAANNNNNGTGG	2 cut(s)	396, 431
CspI	CGGWCCG	1 cut(s)	392
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	9 cut(s)	8, 17, 56, 121, 238, 245, 291, 354, 376
CviKI_1	RGCY	9 cut(s)	8, 17, 56, 121, 238, 245, 291, 354, 376
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
DriI	GACNNNNNGTC	1 cut(s)	226
Eam1105I	GACNNNNNGTC	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	424
Eco47I	GGWCC	2 cut(s)	151, 392
Eco47III	AGCGCT	1 cut(s)	104
Eco91I	GGTNACC	2 cut(s)	275, 385
EcoO109I	RGGNCCY	1 cut(s)	151
EcoO65I	GGTNACC	2 cut(s)	275, 385
EcoRII	CCWGG	2 cut(s)	69, 147
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	1 cut(s)	31
FaiI	YATR	5 cut(s)	29, 53, 138, 225, 227
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	1 cut(s)	27
FauNDI	CATATG	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	6, 15
Fsp4HI	GCNGC	2 cut(s)	6, 15
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	3 cut(s)	35, 67, 104
GluI	GCNGC	2 cut(s)	6, 15
GsaI	CCCAGC	1 cut(s)	103
HaeII	RGCGCY	1 cut(s)	106
HapII	CCGG	9 cut(s)	231, 266, 273, 292, 306, 320, 348, 390, 401
HgaI	GACGC	3 cut(s)	40, 182, 271
HhaI	GCGC	3 cut(s)	36, 68, 105
Hin1I	GRCGYC	2 cut(s)	174, 263
Hin1II	CATG	1 cut(s)	31
Hin6I	GCGC	3 cut(s)	34, 66, 103
HinP1I	GCGC	3 cut(s)	34, 66, 103
HinfI	GANTC	7 cut(s)	269, 295, 316, 337, 358, 379, 404
HpaII	CCGG	9 cut(s)	231, 266, 273, 292, 306, 320, 348, 390, 401
HphI	GGTGA	3 cut(s)	269, 337, 379
Hpy188I	TCNGA	3 cut(s)	172, 261, 300
HpyCH4IV	ACGT	2 cut(s)	183, 195
HpyCH4V	TGCA	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 14
HpyF3I	CTNAG	1 cut(s)	377
HpySE526I	ACGT	2 cut(s)	183, 195
Hsp92I	GRCGYC	2 cut(s)	174, 263
Hsp92II	CATG	1 cut(s)	31
HspAI	GCGC	3 cut(s)	34, 66, 103
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	126, 250
Lsp1109I	GCAGC	2 cut(s)	17, 26
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	2 cut(s)	183, 195
MaeIII	GTNAC	4 cut(s)	275, 343, 385, 442
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	2 cut(s)	463, 466
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	2 cut(s)	139, 464
MlyI	GAGTC	2 cut(s)	388, 413
MmeI	TCCRAC	1 cut(s)	216
MspI	CCGG	9 cut(s)	231, 266, 273, 292, 306, 320, 348, 390, 401
MspR9I	CCNGG	3 cut(s)	71, 149, 232
MvaI	CCWGG	2 cut(s)	71, 149
MvnI	CGCG	2 cut(s)	34, 66
MwoI	GCNNNNNNNGC	2 cut(s)	11, 14
NciI	CCSGG	1 cut(s)	232
NdeI	CATATG	1 cut(s)	225
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	31
NmuCI	GTSAC	4 cut(s)	275, 343, 385, 442
PaqCI	CACCTGC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PfeI	GAWTC	5 cut(s)	269, 295, 316, 337, 358
PflFI	GACNNNGTC	2 cut(s)	161, 182
PfoI	TCCNGGA	1 cut(s)	230
PinAI	ACCGGT	2 cut(s)	305, 347
PkrI	GCNGC	2 cut(s)	7, 16
PleI	GAGTC	2 cut(s)	387, 412
PpsI	GAGTC	2 cut(s)	387, 412
PpuMI	RGGWCCY	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	69, 147
PspEI	GGTNACC	2 cut(s)	275, 385
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	2 cut(s)	69, 147
PspPI	GGNCC	2 cut(s)	151, 392
PspPPI	RGGWCCY	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	73
PsyI	GACNNNGTC	2 cut(s)	161, 182
Rsr2I	CGGWCCG	1 cut(s)	392
RsrII	CGGWCCG	1 cut(s)	392
SatI	GCNGC	2 cut(s)	6, 15
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	2 cut(s)	151, 392
SchI	GAGTC	2 cut(s)	388, 413
ScrFI	CCNGG	3 cut(s)	71, 149, 232
SinI	GGWCC	2 cut(s)	151, 392
Sse9I	AATT	2 cut(s)	139, 464
SsiI	CCGC	1 cut(s)	395
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	3 cut(s)	69, 147, 230
TaiI	ACGT	2 cut(s)	186, 198
TaqI	TCGA	5 cut(s)	84, 108, 114, 156, 327
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	2 cut(s)	139, 464
TfiI	GAWTC	5 cut(s)	269, 295, 316, 337, 358
TseFI	GTSAC	4 cut(s)	275, 343, 385, 442
TseI	GCWGC	2 cut(s)	5, 14
Tsp45I	GTSAC	4 cut(s)	275, 343, 385, 442
Tth111I	GACNNNGTC	2 cut(s)	161, 182
VpaK11BI	GGWCC	2 cut(s)	151, 392
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.