Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Reverse (-)

16372802 .. 16381810

Gene Structure 9009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG198900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTCGCGCCTCCTCCATGAGTGCATAGCCTACCAACGCGCCCTGGATCTCAACCTCGACCACCTCGTCTCCCAGCGCTCCGACCTCGACAAGCACCTTTCCAATCTCCAGAAATCCTCCCAGGTCCTCGACATCGTCAAGTTTGACGCCGACCACGTCCTCTCCAACGTCTCATCCACCTGCGACCTCGCCAACCACGTCAGCGCCAAGGTCCGCAAGCTCGACCTCGCCCAGTCACGCGTCAACTCCACGCTCCTCCGTTTGGACGCGATTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

92

Amino Acids

10.32

Weight (kDa)

6.95

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG4_N	PF20663	33 - 91	3.4e-13	Conserved oligomeric Golgi complex subunit 4, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	188
AasI	GACNNNNNNGTC	2 cut(s)	65, 272
Acc36I	ACCTGC	1 cut(s)	188
AccII	CGCG	4 cut(s)	7, 39, 240, 269
AciI	CCGC	1 cut(s)	214
AclWI	GGATC	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	147
AfeI	AGCGCT	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflIII	ACRYGT	1 cut(s)	238
AjiI	CACGTC	2 cut(s)	157, 199
AjnI	CCWGG	2 cut(s)	42, 120
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw26I	GTCTC	2 cut(s)	73, 175
AlwI	GGATC	1 cut(s)	54
Aor51HI	AGCGCT	1 cut(s)	77
AspLEI	GCGC	4 cut(s)	9, 41, 78, 206
AspS9I	GGNCC	2 cut(s)	124, 211
AvaII	GGWCC	2 cut(s)	124, 211
BciT130I	CCWGG	2 cut(s)	44, 122
BcoDI	GTCTC	2 cut(s)	73, 175
BfoI	RGCGCY	2 cut(s)	79, 207
BfuAI	ACCTGC	1 cut(s)	188
Bme1390I	CCNGG	2 cut(s)	44, 122
Bme18I	GGWCC	2 cut(s)	124, 211
BmgBI	CACGTC	2 cut(s)	157, 199
BmgT120I	GGNCC	2 cut(s)	124, 211
BmrFI	CCNGG	2 cut(s)	44, 122
BmrI	ACTGGG	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	3 cut(s)	42, 120, 207
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	2 cut(s)	44, 122
BseDI	CCNNGG	3 cut(s)	42, 120, 207
BseGI	GGATG	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	245
BseYI	CCCAGC	1 cut(s)	72
Bsh1236I	CGCG	4 cut(s)	7, 39, 240, 269
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	2 cut(s)	73, 175
BsmBI	CGTCTC	2 cut(s)	73, 175
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	1 cut(s)	214
BspFNI	CGCG	4 cut(s)	7, 39, 240, 269
BspMI	ACCTGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	3 cut(s)	42, 120, 207
BssMI	GATC	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	44, 122
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	173
BstFNI	CGCG	4 cut(s)	7, 39, 240, 269
BstH2I	RGCGCY	2 cut(s)	79, 207
BstHHI	GCGC	4 cut(s)	9, 41, 78, 206
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	2 cut(s)	73, 175
BstMBI	GATC	1 cut(s)	46
BstNI	CCWGG	2 cut(s)	44, 122
BstSCI	CCNGG	2 cut(s)	42, 120
BstUI	CGCG	4 cut(s)	7, 39, 240, 269
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BtrI	CACGTC	2 cut(s)	157, 199
BtsCI	GGATG	1 cut(s)	173
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	218
CfoI	GCGC	4 cut(s)	9, 41, 78, 206
Cfr13I	GGNCC	2 cut(s)	124, 211
CseI	GACGC	2 cut(s)	155, 229
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	2 cut(s)	29, 220
CviKI_1	RGCY	2 cut(s)	29, 220
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
DrdI	GACNNNNNNGTC	2 cut(s)	65, 272
DseDI	GACNNNNNNGTC	2 cut(s)	65, 272
Eco130I	CCWWGG	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	124, 211
Eco47III	AGCGCT	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	42, 120
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
Esp3I	CGTCTC	2 cut(s)	73, 175
FaeI	CATG	1 cut(s)	20
FaiI	YATR	2 cut(s)	18, 26
FatI	CATG	1 cut(s)	16
FokI	GGATG	1 cut(s)	160
GlaI	GCGC	4 cut(s)	8, 40, 77, 205
GsaI	CCCAGC	1 cut(s)	76
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	2 cut(s)	79, 207
HgaI	GACGC	2 cut(s)	155, 229
HhaI	GCGC	4 cut(s)	9, 41, 78, 206
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	20
Hin6I	GCGC	4 cut(s)	7, 39, 76, 204
HinP1I	GCGC	4 cut(s)	7, 39, 76, 204
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	244
HpyCH4IV	ACGT	3 cut(s)	156, 168, 198
HpyCH4V	TGCA	1 cut(s)	24
HpySE526I	ACGT	3 cut(s)	156, 168, 198
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	20
HspAI	GCGC	4 cut(s)	7, 39, 76, 204
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	2 cut(s)	83, 258
LpnPI	CCDG	8 cut(s)	29, 56, 86, 107, 122, 134, 193, 245
MaeII	ACGT	3 cut(s)	156, 168, 198
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MflI	RGATCY	1 cut(s)	46
MluI	ACGCGT	1 cut(s)	238
MmeI	TCCRAC	2 cut(s)	105, 189
MspR9I	CCNGG	2 cut(s)	44, 122
MvaI	CCWGG	2 cut(s)	44, 122
MvnI	CGCG	4 cut(s)	7, 39, 240, 269
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	20
NmuCI	GTSAC	1 cut(s)	234
PaqCI	CACCTGC	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	3 cut(s)	63, 153, 195
PflFI	GACNNNGTC	2 cut(s)	134, 155
PpuMI	RGGWCCY	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	42, 120
PspFI	CCCAGC	1 cut(s)	72
PspGI	CCWGG	2 cut(s)	42, 120
PspPI	GGNCC	2 cut(s)	124, 211
PspPPI	RGGWCCY	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	46
PsyI	GACNNNGTC	2 cut(s)	134, 155
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	2 cut(s)	124, 211
ScrFI	CCNGG	2 cut(s)	44, 122
SinI	GGWCC	2 cut(s)	124, 211
SsiI	CCGC	1 cut(s)	214
StyD4I	CCNGG	2 cut(s)	42, 120
StyI	CCWWGG	1 cut(s)	207
TaiI	ACGT	3 cut(s)	159, 171, 201
TaqI	TCGA	4 cut(s)	57, 87, 129, 222
TseFI	GTSAC	1 cut(s)	234
Tsp45I	GTSAC	1 cut(s)	234
TspGWI	ACGGA	1 cut(s)	248
Tth111I	GACNNNGTC	2 cut(s)	134, 155
VpaK11BI	GGWCC	2 cut(s)	124, 211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.