RchiOBHm_Chr1g0334511

Conserved oligomeric Golgi complex subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
26705630 .. 26708078
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56323

Sequence Viewer

Length: 1302 bp
ATGGAGTATAGGAGATTGCCCAAGTTGTCATCGGAGATAAATGCGCAGAATATGAATTTGCTTGATGTTGGTGTTGCTGGTGTTGGGTCTGAGGGGCCTGACCCGAGAGAGGTTGAGCTTATATTGGAGGAGATACTGTCTTTGATGCAGTTGGGTGAGGATTATACTGAATTCATGGTGTCTAAGATCAAGGGATTGAGTAATGTGGATCCGGATTTAGCGCCGAGAGCAACCAAGTCTTTTAGGAGTGGAAGTTTTAGCAAAGTGGTTCAGGACATTACTGGGTTTTATGTCATATTAGAGGGTTTCTTTATGGTTGAGAATGTGAGGAAGGCTATAAGGATTGATGAGCATGTGCCTGACAGTCTTACCACTTCTATGGTGGATGATGTTTTCTATGTTCTGCAGAGTTGCTTGCGAAGGGCAATATCCACTTTGAATATCAGCTCAGTCATTGCTGTGTTGAGTGGTGCCAGTAGTTTGTTGAGTAATGAGTACCATGAAGCTTTGCAACACAAGATGAGAGAGCCCAATCTTGGTGCGAAGCTGTTCTTGGGTGGTGTTGGTGTTCAAAAGACTGGCACAGAGATCGCCACGGTTTTGAATAATATGGATGTGAGTAGTGAGTATGTGCTCAAACTGAAACACGAAATTGAGGAGCAATGTTTGGAAGTATTTCCTGCACCAGCTGATAGAGAAAAAGTTAAGTCTTGTTTGTCCGAGTTAGGGGATATGAGCATCACATTCAAGCAAGCTTTGAATGCTGGCTTGGAGCAACTTGTGGCAACTGTGACACCACGTATCCGTCCAGTGCTTGATAATGTTGCAACAATCAGCTATGAGCTATCAGAGGCTGAATATGCGGATAATGAGGTTAATGACCCATGGGTTCAAGGGCTTCTTCATGCTGTTGAGACGAATGCAGCATGGCTGCAGTCACTAATGACTGCCAACAACTACGATTCGTTCATACATTTGATAATTGAATTCCTTGTGAAGAGGCTTGAAGTAATTATGATGCAGAAAAGATTTAGTCAACTTGGAGGCCTTCAGCTCGACAGAGATTGTAGGGCATTGGTGAGCCACTTTTCTAGCATGACTCAAAGAACTGTTAGAGACAAGTTTGCTCGGCTCACGCAAATGGCAACCATCCTCAACTTAGAAAAGGTCTCTGAGATTCTGGATTTCTGGGGTGAGAATTCAGGACCTATGACATGGAGACTGACACCAGCCGAGGTCAGGCGAGTTTTGGGTCTGAGAGTTGATTTTAAATCCGAAGCAATTGCAGCCCTCAAGTTGTAA

Protein Analysis

433

Amino Acids

48.43

Weight (kDa)

5.13

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG4_m PF08318 2 - 174 2.6e-41 COG4 transport protein, middle alpha-helical bundle
COG4_C PF20662 199 - 415 4.3e-63 Conserved oligomeric Golgi complex subunit 4, C-terminal
RINT1_TIP1 PF04437 294 - 390 1.9e-08 RINT-1/TIP-1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 470
AccIII TCCGGA 1 cut(s) 211
AciI CCGC 1 cut(s) 863
AclWI GGATC 2 cut(s) 203, 216
AcsI RAATTY 4 cut(s) 55, 170, 986, 1198
AcuI CTGAAG 1 cut(s) 1034
AfaI GTAC 1 cut(s) 497
AfiI CCNNNNNNNGG 4 cut(s) 109, 536, 726, 1239
AgsI TTSAA 8 cut(s) 439, 572, 604, 748, 760, 893, 986, 1007
AjuI GAANNNNNNNTTGG 4 cut(s) 536, 568, 752, 784
AluBI AGCT 9 cut(s) 118, 447, 506, 547, 689, 755, 837, 844, 1054
AluI AGCT 9 cut(s) 118, 447, 506, 547, 689, 755, 837, 844, 1054
Alw21I GWGCWC 1 cut(s) 636
Alw26I GTCTC 4 cut(s) 908, 1110, 1174, 1213
AlwI GGATC 2 cut(s) 203, 216
AlwNI CAGNNNCTG 1 cut(s) 854
Ama87I CYCGRG 1 cut(s) 103
Aor13HI TCCGGA 1 cut(s) 211
AoxI GGCC 2 cut(s) 95, 1045
ApeKI GCWGC 3 cut(s) 923, 931, 1286
ApoI RAATTY 4 cut(s) 55, 170, 986, 1198
Asp700I GAANNNNTTC 2 cut(s) 548, 675
AspLEI GCGC 2 cut(s) 46, 223
AspS9I GGNCC 2 cut(s) 95, 1205
AsuHPI GGTGA 3 cut(s) 167, 1090, 1205
AvaI CYCGRG 1 cut(s) 103
AvaII GGWCC 1 cut(s) 1205
BamHI GGATCC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 470
BanII GRGCYC 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 636
BbvI GCAGC 3 cut(s) 918, 935, 1298
BccI CCATC 1 cut(s) 1157
BcgI CGANNNNNNTGC 4 cut(s) 571, 605, 1265, 1299
BciVI GTATCC 1 cut(s) 812
BcoDI GTCTC 4 cut(s) 908, 1110, 1174, 1213
BfaI CTAG 1 cut(s) 1092
BfmI CTRYAG 2 cut(s) 404, 932
BfoI RGCGCY 1 cut(s) 224
BfuI GTATCC 1 cut(s) 812
BisI GCNGC 3 cut(s) 924, 932, 1287
BlsI GCNGC 3 cut(s) 925, 933, 1288
Bme18I GGWCC 1 cut(s) 1205
BmeT110I CYCGRG 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 95, 1205
BmiI GGNNCC 3 cut(s) 96, 210, 472
BmrI ACTGGG 1 cut(s) 291
BmsI GCATC 3 cut(s) 135, 747, 1008
BmuI ACTGGG 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 1277
BsaAI YACGTR 1 cut(s) 800
BsaI GGTCTC 1 cut(s) 1174
BsaJI CCNNGG 3 cut(s) 594, 884, 1233
BsaWI WCCGGW 1 cut(s) 211
BsaXI ACNNNNNCTCC 4 cut(s) 122, 152, 238, 268
Bsc4I CCNNNNNNNGG 4 cut(s) 109, 536, 726, 1239
Bse1I ACTGG 4 cut(s) 286, 474, 583, 809
Bse3DI GCAATG 2 cut(s) 453, 668
BseAI TCCGGA 1 cut(s) 211
BseDI CCNNGG 3 cut(s) 594, 884, 1233
BseGI GGATG 3 cut(s) 391, 619, 1149
BseLI CCNNNNNNNGG 4 cut(s) 109, 536, 726, 1239
BseMI GCAATG 2 cut(s) 453, 668
BseMII CTCAG 4 cut(s) 81, 462, 1164, 1247
BseNI ACTGG 4 cut(s) 286, 474, 583, 809
BseRI GAGGAG 2 cut(s) 143, 671
BseXI GCAGC 3 cut(s) 918, 935, 1298
BsgI GTGCAG 1 cut(s) 666
BshFI GGCC 2 cut(s) 97, 1047
BshNI GGYRCC 1 cut(s) 470
BsiHKAI GWGCWC 1 cut(s) 636
BsiHKCI CYCGRG 1 cut(s) 103
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 4 cut(s) 109, 536, 726, 1239
BsmAI GTCTC 4 cut(s) 908, 1110, 1174, 1213
BsmBI CGTCTC 1 cut(s) 908
BsmI GAATGC 2 cut(s) 766, 925
BsnI GGCC 2 cut(s) 97, 1047
Bso31I GGTCTC 1 cut(s) 1174
BsoBI CYCGRG 1 cut(s) 103
Bsp1286I GDGCHC 2 cut(s) 531, 636
Bsp13I TCCGGA 1 cut(s) 211
Bsp143I GATC 3 cut(s) 186, 208, 588
Bsp19I CCATGG 1 cut(s) 884
BspACI CCGC 1 cut(s) 863
BspANI GGCC 2 cut(s) 97, 1047
BspCNI CTCAG 4 cut(s) 82, 461, 1165, 1248
BspEI TCCGGA 1 cut(s) 211
BspLI GGNNCC 3 cut(s) 96, 210, 472
BspMAI CTGCAG 2 cut(s) 408, 936
BspPI GGATC 2 cut(s) 203, 216
BspT107I GGYRCC 1 cut(s) 470
BspTNI GGTCTC 1 cut(s) 1174
BsrDI GCAATG 2 cut(s) 453, 668
BsrI ACTGG 4 cut(s) 286, 474, 583, 809
BssECI CCNNGG 3 cut(s) 594, 884, 1233
BssMI GATC 3 cut(s) 186, 208, 588
BssT1I CCWWGG 1 cut(s) 884
Bst4CI ACNGT 5 cut(s) 138, 365, 598, 790, 1111
Bst6I CTCTTC 1 cut(s) 992
BstBAI YACGTR 1 cut(s) 800
BstC8I GCNNGC 3 cut(s) 416, 753, 766
BstDEI CTNAG 6 cut(s) 90, 183, 448, 1159, 1173, 1256
BstDSI CCRYGG 2 cut(s) 594, 884
BstF5I GGATG 3 cut(s) 391, 619, 1149
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 2 cut(s) 46, 223
BstKTI GATC 3 cut(s) 189, 211, 591
BstMAI GTCTC 4 cut(s) 908, 1110, 1174, 1213
BstMBI GATC 3 cut(s) 186, 208, 588
BstMWI GCNNNNNNNGC 4 cut(s) 227, 761, 860, 1286
BstNSI RCATGY 1 cut(s) 356
BstSFI CTRYAG 2 cut(s) 404, 932
BstV1I GCAGC 3 cut(s) 918, 935, 1298
BstX2I RGATCY 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 379
BstYI RGATCY 1 cut(s) 208
BsuI GTATCC 1 cut(s) 812
BsuRI GGCC 2 cut(s) 97, 1047
BtgI CCRYGG 2 cut(s) 594, 884
BtsCI GGATG 3 cut(s) 391, 619, 1149
BtsIMutI CAGTG 1 cut(s) 816
Cac8I GCNNGC 3 cut(s) 416, 753, 766
CaiI CAGNNNCTG 1 cut(s) 854
CfoI GCGC 2 cut(s) 46, 223
Cfr13I GGNCC 2 cut(s) 95, 1205
Csp6I GTAC 1 cut(s) 496
CviAII CATG 8 cut(s) 175, 353, 500, 885, 905, 927, 1096, 1215
CviQI GTAC 1 cut(s) 496
DdeI CTNAG 6 cut(s) 90, 183, 448, 1159, 1173, 1256
DpnI GATC 3 cut(s) 188, 210, 590
DpnII GATC 3 cut(s) 186, 208, 588
DraI TTTAAA 1 cut(s) 1270
Eam1104I CTCTTC 1 cut(s) 992
EarI CTCTTC 1 cut(s) 992
Eco130I CCWWGG 1 cut(s) 884
Eco147I AGGCCT 1 cut(s) 1047
Eco24I GRGCYC 1 cut(s) 531
Eco31I GGTCTC 1 cut(s) 1174
Eco47I GGWCC 1 cut(s) 1205
Eco57I CTGAAG 1 cut(s) 1034
Eco88I CYCGRG 1 cut(s) 103
EcoO109I RGGNCCY 2 cut(s) 95, 1205
EcoRI GAATTC 3 cut(s) 170, 986, 1198
EcoT14I CCWWGG 1 cut(s) 884
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 884
Esp3I CGTCTC 1 cut(s) 908
FaeI CATG 8 cut(s) 178, 356, 503, 888, 908, 930, 1099, 1218
FalI AAGNNNNNCTT 4 cut(s) 536, 568, 885, 917
FatI CATG 8 cut(s) 174, 352, 499, 884, 904, 926, 1095, 1214
Fnu4HI GCNGC 3 cut(s) 924, 932, 1287
FokI GGATG 3 cut(s) 398, 626, 1136
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 3 cut(s) 924, 932, 1287
FspBI CTAG 1 cut(s) 1092
FspI TGCGCA 1 cut(s) 45
GlaI GCGC 2 cut(s) 45, 222
GluI GCNGC 3 cut(s) 924, 932, 1287
HaeII RGCGCY 1 cut(s) 224
HaeIII GGCC 2 cut(s) 97, 1047
HapII CCGG 1 cut(s) 212
HhaI GCGC 2 cut(s) 46, 223
Hin1II CATG 8 cut(s) 178, 356, 503, 888, 908, 930, 1099, 1218
Hin6I GCGC 2 cut(s) 44, 221
HinP1I GCGC 2 cut(s) 44, 221
HincII GTYRAC 1 cut(s) 1037
HindII GTYRAC 1 cut(s) 1037
HindIII AAGCTT 2 cut(s) 504, 753
HinfI GANTC 3 cut(s) 962, 1099, 1177
HpaII CCGG 1 cut(s) 212
HphI GGTGA 3 cut(s) 167, 1090, 1205
Hpy166II GTNNAC 1 cut(s) 1037
Hpy188I TCNGA 7 cut(s) 34, 91, 721, 850, 1174, 1257, 1276
Hpy188III TCNNGA 4 cut(s) 212, 272, 1181, 1203
Hpy8I GTNNAC 1 cut(s) 1037
HpyAV CCTTC 3 cut(s) 325, 414, 1058
HpyCH4III ACNGT 5 cut(s) 138, 365, 598, 790, 1111
HpyCH4IV ACGT 1 cut(s) 799
HpyCH4V TGCA 9 cut(s) 148, 406, 511, 683, 827, 923, 934, 1021, 1286
HpyF10VI GCNNNNNNNGC 4 cut(s) 227, 761, 860, 1286
HpyF3I CTNAG 6 cut(s) 90, 183, 448, 1159, 1173, 1256
HpySE526I ACGT 1 cut(s) 799
Hsp92II CATG 8 cut(s) 178, 356, 503, 888, 908, 930, 1099, 1218
HspAI GCGC 2 cut(s) 44, 221
Kpn2I TCCGGA 1 cut(s) 211
Kzo9I GATC 3 cut(s) 186, 208, 588
LmnI GCTCC 2 cut(s) 658, 772
Lsp1109I GCAGC 3 cut(s) 918, 935, 1298
LweI GCATC 3 cut(s) 135, 747, 1008
MaeI CTAG 1 cut(s) 1092
MaeII ACGT 1 cut(s) 799
MaeIII GTNAC 2 cut(s) 790, 936
MalI GATC 3 cut(s) 188, 210, 590
MboI GATC 3 cut(s) 186, 208, 588
MboII GAAGA 2 cut(s) 893, 1009
MfeI CAATTG 1 cut(s) 1281
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 2 cut(s) 531, 636
MluCI AATT 8 cut(s) 55, 170, 651, 981, 986, 1011, 1198, 1281
MlyI GAGTC 1 cut(s) 1093
MroI TCCGGA 1 cut(s) 211
MroXI GAANNNNTTC 2 cut(s) 548, 675
MseI TTAA 3 cut(s) 705, 876, 1269
MslI CAYNNNNRTG 3 cut(s) 377, 458, 1139
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 1281
Mva1269I GAATGC 2 cut(s) 766, 925
MwoI GCNNNNNNNGC 4 cut(s) 227, 761, 860, 1286
NcoI CCATGG 1 cut(s) 884
NdeII GATC 3 cut(s) 186, 208, 588
NlaIII CATG 8 cut(s) 178, 356, 503, 888, 908, 930, 1099, 1218
NlaIV GGNNCC 3 cut(s) 96, 210, 472
NmeAIII GCCGAG 3 cut(s) 249, 1108, 1258
NmuCI GTSAC 2 cut(s) 790, 936
NsbI TGCGCA 1 cut(s) 45
NspI RCATGY 1 cut(s) 356
PceI AGGCCT 1 cut(s) 1047
PctI GAATGC 2 cut(s) 766, 925
PdmI GAANNNNTTC 2 cut(s) 548, 675
PfeI GAWTC 2 cut(s) 962, 1177
PkrI GCNGC 3 cut(s) 925, 933, 1288
PleI GAGTC 1 cut(s) 1093
PpsI GAGTC 1 cut(s) 1093
Ppu21I YACGTR 1 cut(s) 800
PpuMI RGGWCCY 1 cut(s) 1205
Psp5II RGGWCCY 1 cut(s) 1205
PspN4I GGNNCC 3 cut(s) 96, 210, 472
PspPI GGNCC 2 cut(s) 95, 1205
PspPPI RGGWCCY 1 cut(s) 1205
PstI CTGCAG 2 cut(s) 408, 936
PstNI CAGNNNCTG 1 cut(s) 854
PsuI RGATCY 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 689
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
RseI CAYNNNNRTG 3 cut(s) 377, 458, 1139
SaqAI TTAA 3 cut(s) 705, 876, 1269
SatI GCNGC 3 cut(s) 924, 932, 1287
Sau3AI GATC 3 cut(s) 186, 208, 588
Sau96I GGNCC 2 cut(s) 95, 1205
SchI GAGTC 1 cut(s) 1093
SduI GDGCHC 2 cut(s) 531, 636
SfaNI GCATC 3 cut(s) 135, 747, 1008
SfcI CTRYAG 2 cut(s) 404, 932
SinI GGWCC 1 cut(s) 1205
SmiMI CAYNNNNRTG 3 cut(s) 377, 458, 1139
SmlI CTYRAG 1 cut(s) 1292
SmoI CTYRAG 1 cut(s) 1292
Sse9I AATT 8 cut(s) 55, 170, 651, 981, 986, 1011, 1198, 1281
SseBI AGGCCT 1 cut(s) 1047
SsiI CCGC 1 cut(s) 863
SspMI CTAG 1 cut(s) 1092
StuI AGGCCT 1 cut(s) 1047
StyI CCWWGG 1 cut(s) 884
TaaI ACNGT 5 cut(s) 138, 365, 598, 790, 1111
TaiI ACGT 1 cut(s) 802
TaqI TCGA 1 cut(s) 1056
TasI AATT 8 cut(s) 55, 170, 651, 981, 986, 1011, 1198, 1281
TfiI GAWTC 2 cut(s) 962, 1177
Tru1I TTAA 3 cut(s) 705, 876, 1269
Tru9I TTAA 3 cut(s) 705, 876, 1269
TscAI CASTG 1 cut(s) 816
TseFI GTSAC 2 cut(s) 790, 936
TseI GCWGC 3 cut(s) 923, 931, 1286
Tsp45I GTSAC 2 cut(s) 790, 936
TspDTI ATGAA 5 cut(s) 68, 163, 516, 893, 958
TspGWI ACGGA 1 cut(s) 794
TspRI CASTG 1 cut(s) 816
VpaK11BI GGWCC 1 cut(s) 1205
XapI RAATTY 4 cut(s) 55, 170, 986, 1198
XceI RCATGY 1 cut(s) 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XmnI GAANNNNTTC 2 cut(s) 548, 675
XspI CTAG 1 cut(s) 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.