Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Forward (+)

25865431 .. 25868839

Gene Structure 3409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G011510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2208 bp

ATGGAGTCGTCGGATCCACCACCGTCGATCAACTTCGGCACCGCCGAGGCTCTCGACCACATCCGTAGCCTCACCGACGTCGGAGCCATGACGCGCCTCCTCCACGAGTGCATAGCCTACCAACGCGCCCTGGATCTCAACCTCGACCACCTCCTCTCCCAGCGCTCCGACCTCGACAAGCACCTCTCCAATCTCCAGAAATCCTCCCAGGTCCTCGACATCGTCAAGTCCGACGCCGACCACGTCCTCTCCAACGTCTCCTCCACCTGCGACCTCGCCGACCACGTCAGCGCCAAGGTCCGCGAGCTCGACCTCGCCCAGTCGCGCGTCAACTCCACGCTCCTCCGGCTCGACGCGATTGTGGAGAGGACCAACTGCATTGACGGCGTTAAGCAGGCGCTTGACGGCCAGGACTACGAGTCTGCGGCGAAGTTCGTGCAGAGGTTTATGCAGATTGAATCGGAGTATAGGGATTCGGGTTCGGAGCAGAGGGATCAGCTCATGGAGTCGAAGAAGCAGCTCGAATCGATTGTGAAGAAGAAGCTATCTGCAGCCGTGGACCAGAGGGACCATCCCAATGTGCTGAGGTTCATTAGGCTCTACACGCCGTTGGGGATAGAAGAAGAGGGTCTACAGGCGTATGTGAGTTACTTGAGGAAGGTGATTGGGATGAGATCGAGGCTCGAGTTCGAGCATTTGATGGAGTTGATGGAGCAGAAGAACAATCAGAACCAGCAGGTTAATTTTGTGGGGTGTTTGACCAATTTGTTTAAGGACATTGTGTTGGCAATTGAAGAGAATGACGAGATTTTGAGGGGGCTCTGTGGGGAAGATGGGATTGTTTATGCTATTTGTGAGCTTCAAGAGGAGTGTGATTCGAGGGGGACTTTGATTTTGAAGAAGTACATGGAGTATAGGAGATTGCCAAAGTTGTCATCGGAGATAAATGCACAGAATATGAATTTGCTTGATGTTGGTGTTGCTGGTGTTGGGTCTGAGGGGCCTGACCCGAGAGAGGTTGAGCTTATATTGGAGGAGATACTGTCTTTGATGCAGTTGGGTGAGGATTATACTGAATTCATGGTGTCTAAGATCAAGGGCTTGAGTAATGTGGATCCGGATTTAGCGCCGAGAGCAACCAAGTCTTTTAGGAGTGGAAGTTTTAGCAAAGTGGTTCAGGACATTACTGGGTTTTATGTCATATTAGAGGGTTTCTTTATGGTTGAGAATGTGAGGAAGGCTATAAGGATTGATGAGCATGTGCCTGACAGTCTTACCACTTCTATGGTGGATGATGTTTTCTATGTTCTGCAGAGTTGCTTGCGAAGGGCGATATCCACTTTGAATATCAGCTCAGTGATTGCTGTGTTGAGTGGTGCCAGTAGTTTGTTGAGTAATGAGTACCATGAAGCTTTGCAACACAAGATGAGAGAGCCCAATCTTGGTGCGAAGCTGTTCTTGGGTGGTGTTGGTGTTCAAAAGACTGGCACAGAGATCGCTACGGTTTTGAATAATATGGATGTGAGTAGTGAGTATGTGCTCAAACTGAAACACGAAATTGAGGAGCAATGTTTGGAAGTATTTCCTGCACCAGCTGATAGAGAAAAAGTTAAGTCTTGTTTGTCCGAGTTAGGGGATATGAGCAATACATTCAAGCAAGCTTTGAATGCTGGCTTGGAGCAACTTGTGGCAACTGTGACACCACGTATCCGTCCAGTGCTTGATAATGTTGCAACCATCAGCTATGAGCTATCAGAGGCTGAATATGCGGACAATGAGGTTAATGACCCATGGGTTCAAGGGCTTCTTCATGCTGTTGAGACGAATGCAGCATGGCTGCAGTCACTAATGACTGCCAACAACTACGATTCGTTCATACATTTGATAATTGAATTCCTTGTGAAGAGGCTTGAAGTAATTATGATGCAGAAAAGATTTAGTCAACTTGGAGGCCTTCAGCTCGACAGAGATTGTAGGGCATTGGTGAGCCACTTTTCTAGCATGACTCAAAGAACTGTTAGAGACAAGTTTGCTCGGCTCACTCAAATGGCAACCATCCTCAACTTAGAAAAGGTCTCTGAGATTCTGGATTTCTGGGGTGAGAATTCAGGACCTATGACATGGAGACTGACACCAGCCGAGGTCAGGCGAGTTTTGGGTCTGAGAGTTGATTTTAAATCCGAAGCAATTGCGGCCCTCAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

735

Amino Acids

82.65

Weight (kDa)

5.08

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG4_N	PF20663	62 - 156	4.6e-28	Conserved oligomeric Golgi complex subunit 4, N-terminal
COG4_m	PF08318	196 - 476	2.4e-75	COG4 transport protein, middle alpha-helical bundle
COG4_C	PF20662	501 - 717	3.1e-63	Conserved oligomeric Golgi complex subunit 4, C-terminal
RINT1_TIP1	PF04437	553 - 692	1.6e-08	RINT-1/TIP-1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	275
AatII	GACGTC	1 cut(s)	81
Acc36I	ACCTGC	2 cut(s)	275, 727
AccB1I	GGYRCC	2 cut(s)	38, 1376
AccI	GTMKAC	1 cut(s)	631
AccII	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
AccIII	TCCGGA	1 cut(s)	1117
AciI	CCGC	5 cut(s)	42, 301, 425, 1769, 2192
AclWI	GGATC	6 cut(s)	8, 21, 141, 501, 1109, 1122
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	4 cut(s)	961, 1076, 1892, 2104
AcuI	CTGAAG	1 cut(s)	1940
AcyI	GRCGYC	2 cut(s)	78, 234
AfaI	GTAC	2 cut(s)	905, 1403
AfeI	AGCGCT	1 cut(s)	164
AfiI	CCNNNNNNNGG	4 cut(s)	1015, 1442, 1632, 2145
AhdI	GACNNNNNGTC	1 cut(s)	418
AjiI	CACGTC	2 cut(s)	244, 286
AjnI	CCWGG	3 cut(s)	129, 207, 408
AjuI	GAANNNNNNNTTGG	4 cut(s)	1442, 1474, 1658, 1690
Alw21I	GWGCWC	2 cut(s)	309, 1542
Alw26I	GTCTC	5 cut(s)	262, 1814, 2016, 2080, 2119
AlwI	GGATC	6 cut(s)	8, 21, 141, 501, 1109, 1122
AlwNI	CAGNNNCTG	1 cut(s)	1760
Ama87I	CYCGRG	2 cut(s)	683, 1009
Aor13HI	TCCGGA	1 cut(s)	1117
Aor51HI	AGCGCT	1 cut(s)	164
AoxI	GGCC	4 cut(s)	406, 1001, 1951, 2193
ApeKI	GCWGC	4 cut(s)	517, 551, 1829, 1837
ApoI	RAATTY	4 cut(s)	961, 1076, 1892, 2104
ArsI	GACNNNNNNTTYG	2 cut(s)	877, 909
Asp700I	GAANNNNTTC	2 cut(s)	1454, 1581
AspLEI	GCGC	7 cut(s)	96, 128, 165, 293, 327, 400, 1129
AspS9I	GGNCC	8 cut(s)	211, 298, 369, 559, 568, 1001, 2111, 2194
AsuHPI	GGTGA	5 cut(s)	64, 673, 1073, 1996, 2111
AvaI	CYCGRG	2 cut(s)	683, 1009
AvaII	GGWCC	6 cut(s)	211, 298, 369, 559, 568, 2111
BamHI	GGATCC	2 cut(s)	13, 1114
BanI	GGYRCC	2 cut(s)	38, 1376
BanII	GRGCYC	3 cut(s)	309, 822, 1437
BarI	GAAGNNNNNNTAC	2 cut(s)	615, 647
BauI	CACGAG	1 cut(s)	104
Bbv12I	GWGCWC	2 cut(s)	309, 1542
BbvCI	CCTCAGC	1 cut(s)	584
BbvI	GCAGC	4 cut(s)	529, 563, 1824, 1841
BccI	CCATC	6 cut(s)	579, 694, 703, 827, 1745, 2063
BceAI	ACGGC	4 cut(s)	400, 421, 539, 592
BcgI	CGANNNNNNTGC	6 cut(s)	418, 452, 1477, 1511, 2171, 2205
BciT130I	CCWGG	3 cut(s)	131, 209, 410
BciVI	GTATCC	1 cut(s)	1718
BcoDI	GTCTC	5 cut(s)	262, 1814, 2016, 2080, 2119
BfaI	CTAG	1 cut(s)	1998
BfmI	CTRYAG	4 cut(s)	549, 632, 1310, 1838
BfoI	RGCGCY	4 cut(s)	166, 294, 401, 1130
BfuAI	ACCTGC	2 cut(s)	275, 727
BfuI	GTATCC	1 cut(s)	1718
BisI	GCNGC	6 cut(s)	426, 518, 552, 1830, 1838, 2193
BlsI	GCNGC	6 cut(s)	427, 519, 553, 1831, 1839, 2194
Bme1390I	CCNGG	3 cut(s)	131, 209, 410
Bme18I	GGWCC	6 cut(s)	211, 298, 369, 559, 568, 2111
BmeRI	GACNNNNNGTC	1 cut(s)	418
BmeT110I	CYCGRG	2 cut(s)	683, 1009
BmgBI	CACGTC	2 cut(s)	244, 286
BmgT120I	GGNCC	8 cut(s)	211, 298, 369, 559, 568, 1001, 2111, 2194
BmiI	GGNNCC	7 cut(s)	15, 40, 85, 569, 1002, 1116, 1378
BmrFI	CCNGG	3 cut(s)	131, 209, 410
BmrI	ACTGGG	2 cut(s)	313, 1197
BmsI	GCATC	2 cut(s)	1041, 1914
BmuI	ACTGGG	2 cut(s)	313, 1197
BpmI	CTGGAG	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	584
BpuEI	CTTGAG	3 cut(s)	673, 1123, 2183
Bsa29I	ATCGAT	1 cut(s)	527
BsaAI	YACGTR	1 cut(s)	1706
BsaHI	GRCGYC	2 cut(s)	78, 234
BsaI	GGTCTC	1 cut(s)	2080
BsaJI	CCNNGG	7 cut(s)	45, 129, 207, 294, 555, 1790, 2139
BsaWI	WCCGGW	1 cut(s)	1117
Bsc4I	CCNNNNNNNGG	4 cut(s)	1015, 1442, 1632, 2145
Bse1I	ACTGG	5 cut(s)	319, 1192, 1380, 1489, 1715
Bse3DI	GCAATG	1 cut(s)	1574
BseAI	TCCGGA	1 cut(s)	1117
BseBI	CCWGG	3 cut(s)	131, 209, 410
BseCI	ATCGAT	1 cut(s)	527
BseDI	CCNNGG	7 cut(s)	45, 129, 207, 294, 555, 1790, 2139
BseGI	GGATG	6 cut(s)	60, 571, 675, 1297, 1525, 2055
BseLI	CCNNNNNNNGG	4 cut(s)	1015, 1442, 1632, 2145
BseMI	GCAATG	1 cut(s)	1574
BseMII	CTCAG	5 cut(s)	575, 987, 1368, 2070, 2153
BseNI	ACTGG	5 cut(s)	319, 1192, 1380, 1489, 1715
BseRI	GAGGAG	7 cut(s)	89, 143, 250, 332, 881, 1049, 1577
BseXI	GCAGC	4 cut(s)	529, 563, 1824, 1841
BseYI	CCCAGC	1 cut(s)	159
BsgI	GTGCAG	2 cut(s)	458, 1572
Bsh1236I	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
BshFI	GGCC	4 cut(s)	408, 1003, 1953, 2195
BshNI	GGYRCC	2 cut(s)	38, 1376
BshVI	ATCGAT	1 cut(s)	527
BsiHKAI	GWGCWC	2 cut(s)	309, 1542
BsiHKCI	CYCGRG	2 cut(s)	683, 1009
BsiSI	CCGG	2 cut(s)	346, 1118
BslFI	GGGAC	2 cut(s)	581, 898
BslI	CCNNNNNNNGG	4 cut(s)	1015, 1442, 1632, 2145
BsmAI	GTCTC	5 cut(s)	262, 1814, 2016, 2080, 2119
BsmBI	CGTCTC	2 cut(s)	262, 1814
BsmFI	GGGAC	2 cut(s)	581, 898
BsmI	GAATGC	2 cut(s)	1672, 1831
BsnI	GGCC	4 cut(s)	408, 1003, 1953, 2195
Bso31I	GGTCTC	1 cut(s)	2080
BsoBI	CYCGRG	2 cut(s)	683, 1009
Bsp1286I	GDGCHC	4 cut(s)	309, 822, 1437, 1542
Bsp13I	TCCGGA	1 cut(s)	1117
Bsp143I	GATC	8 cut(s)	13, 27, 133, 493, 674, 1092, 1114, 1494
Bsp19I	CCATGG	1 cut(s)	1790
BspACI	CCGC	5 cut(s)	42, 301, 425, 1769, 2192
BspANI	GGCC	4 cut(s)	408, 1003, 1953, 2195
BspCNI	CTCAG	5 cut(s)	576, 988, 1367, 2071, 2154
BspDI	ATCGAT	1 cut(s)	527
BspEI	TCCGGA	1 cut(s)	1117
BspFNI	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
BspLI	GGNNCC	7 cut(s)	15, 40, 85, 569, 1002, 1116, 1378
BspMAI	CTGCAG	3 cut(s)	553, 1314, 1842
BspMI	ACCTGC	2 cut(s)	275, 727
BspPI	GGATC	6 cut(s)	8, 21, 141, 501, 1109, 1122
BspT107I	GGYRCC	2 cut(s)	38, 1376
BspTNI	GGTCTC	1 cut(s)	2080
BsrDI	GCAATG	1 cut(s)	1574
BsrI	ACTGG	5 cut(s)	319, 1192, 1380, 1489, 1715
BssECI	CCNNGG	7 cut(s)	45, 129, 207, 294, 555, 1790, 2139
BssMI	GATC	8 cut(s)	13, 27, 133, 493, 674, 1092, 1114, 1494
BssNI	GRCGYC	2 cut(s)	78, 234
BssSI	CACGAG	1 cut(s)	104
BssT1I	CCWWGG	2 cut(s)	294, 1790
Bst2BI	CACGAG	1 cut(s)	104
Bst2UI	CCWGG	3 cut(s)	131, 209, 410
Bst4CI	ACNGT	6 cut(s)	24, 1044, 1271, 1504, 1696, 2017
Bst6I	CTCTTC	3 cut(s)	618, 789, 1898
BstACI	GRCGYC	2 cut(s)	78, 234
BstBAI	YACGTR	1 cut(s)	1706
BstC8I	GCNNGC	5 cut(s)	305, 396, 1322, 1659, 1672
BstDEI	CTNAG	7 cut(s)	584, 996, 1089, 1354, 2065, 2079, 2162
BstDSI	CCRYGG	2 cut(s)	555, 1790
BstF5I	GGATG	6 cut(s)	60, 571, 675, 1297, 1525, 2055
BstFNI	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
BstH2I	RGCGCY	4 cut(s)	166, 294, 401, 1130
BstHHI	GCGC	7 cut(s)	96, 128, 165, 293, 327, 400, 1129
BstKTI	GATC	8 cut(s)	16, 30, 136, 496, 677, 1095, 1117, 1497
BstMAI	GTCTC	5 cut(s)	262, 1814, 2016, 2080, 2119
BstMBI	GATC	8 cut(s)	13, 27, 133, 493, 674, 1092, 1114, 1494
BstMWI	GCNNNNNNNGC	7 cut(s)	346, 384, 604, 1133, 1667, 1766, 2192
BstNI	CCWGG	3 cut(s)	131, 209, 410
BstNSI	RCATGY	1 cut(s)	1262
BstSCI	CCNGG	3 cut(s)	129, 207, 408
BstSFI	CTRYAG	4 cut(s)	549, 632, 1310, 1838
BstUI	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
BstV1I	GCAGC	4 cut(s)	529, 563, 1824, 1841
BstX2I	RGATCY	3 cut(s)	13, 133, 1114
BstXI	CCANNNNNNTGG	1 cut(s)	1285
BstYI	RGATCY	3 cut(s)	13, 133, 1114
Bsu15I	ATCGAT	1 cut(s)	527
BsuI	GTATCC	1 cut(s)	1718
BsuRI	GGCC	4 cut(s)	408, 1003, 1953, 2195
BsuTUI	ATCGAT	1 cut(s)	527
BtgI	CCRYGG	2 cut(s)	555, 1790
BtrI	CACGTC	2 cut(s)	244, 286
BtsCI	GGATG	6 cut(s)	60, 571, 675, 1297, 1525, 2055
BtsIMutI	CAGTG	2 cut(s)	1362, 1722
BveI	ACCTGC	2 cut(s)	275, 727
Cac8I	GCNNGC	5 cut(s)	305, 396, 1322, 1659, 1672
CaiI	CAGNNNCTG	1 cut(s)	1760
CfoI	GCGC	7 cut(s)	96, 128, 165, 293, 327, 400, 1129
Cfr13I	GGNCC	8 cut(s)	211, 298, 369, 559, 568, 1001, 2111, 2194
ClaI	ATCGAT	1 cut(s)	527
CseI	GACGC	4 cut(s)	100, 242, 316, 362
Csp6I	GTAC	2 cut(s)	904, 1402
CviQI	GTAC	2 cut(s)	904, 1402
DdeI	CTNAG	7 cut(s)	584, 996, 1089, 1354, 2065, 2079, 2162
DpnI	GATC	8 cut(s)	15, 29, 135, 495, 676, 1094, 1116, 1496
DpnII	GATC	8 cut(s)	13, 27, 133, 493, 674, 1092, 1114, 1494
DraI	TTTAAA	1 cut(s)	2176
DriI	GACNNNNNGTC	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	3 cut(s)	618, 789, 1898
Eam1105I	GACNNNNNGTC	1 cut(s)	418
EarI	CTCTTC	3 cut(s)	618, 789, 1898
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	2 cut(s)	294, 1790
Eco147I	AGGCCT	1 cut(s)	1953
Eco24I	GRGCYC	3 cut(s)	309, 822, 1437
Eco31I	GGTCTC	1 cut(s)	2080
Eco32I	GATATC	1 cut(s)	1335
Eco47I	GGWCC	6 cut(s)	211, 298, 369, 559, 568, 2111
Eco47III	AGCGCT	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	1940
Eco88I	CYCGRG	2 cut(s)	683, 1009
EcoICRI	GAGCTC	1 cut(s)	307
EcoO109I	RGGNCCY	3 cut(s)	211, 1001, 2111
EcoRI	GAATTC	3 cut(s)	1076, 1892, 2104
EcoRII	CCWGG	3 cut(s)	129, 207, 408
EcoRV	GATATC	1 cut(s)	1335
EcoT14I	CCWWGG	2 cut(s)	294, 1790
EcoT38I	GRGCYC	3 cut(s)	309, 822, 1437
ErhI	CCWWGG	2 cut(s)	294, 1790
Esp3I	CGTCTC	2 cut(s)	262, 1814
FalI	AAGNNNNNCTT	4 cut(s)	1442, 1474, 1791, 1823
FaqI	GGGAC	2 cut(s)	581, 898
FblI	GTMKAC	1 cut(s)	631
Fnu4HI	GCNGC	6 cut(s)	426, 518, 552, 1830, 1838, 2193
FokI	GGATG	6 cut(s)	47, 558, 682, 1304, 1532, 2042
FriOI	GRGCYC	3 cut(s)	309, 822, 1437
Fsp4HI	GCNGC	6 cut(s)	426, 518, 552, 1830, 1838, 2193
FspBI	CTAG	1 cut(s)	1998
GlaI	GCGC	7 cut(s)	95, 127, 164, 292, 326, 399, 1128
GluI	GCNGC	6 cut(s)	426, 518, 552, 1830, 1838, 2193
GsaI	CCCAGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	179
HaeII	RGCGCY	4 cut(s)	166, 294, 401, 1130
HaeIII	GGCC	4 cut(s)	408, 1003, 1953, 2195
HapII	CCGG	2 cut(s)	346, 1118
HgaI	GACGC	4 cut(s)	100, 242, 316, 362
HhaI	GCGC	7 cut(s)	96, 128, 165, 293, 327, 400, 1129
Hin1I	GRCGYC	2 cut(s)	78, 234
Hin6I	GCGC	7 cut(s)	94, 126, 163, 291, 325, 398, 1127
HinP1I	GCGC	7 cut(s)	94, 126, 163, 291, 325, 398, 1127
HincII	GTYRAC	2 cut(s)	331, 1943
HindII	GTYRAC	2 cut(s)	331, 1943
HindIII	AAGCTT	2 cut(s)	1410, 1659
HpaII	CCGG	2 cut(s)	346, 1118
HphI	GGTGA	5 cut(s)	64, 673, 1073, 1996, 2111
Hpy166II	GTNNAC	4 cut(s)	331, 559, 632, 1943
Hpy188III	TCNNGA	7 cut(s)	53, 196, 863, 1118, 1178, 2087, 2109
Hpy8I	GTNNAC	4 cut(s)	331, 559, 632, 1943
Hpy99I	CGWCG	6 cut(s)	13, 28, 80, 83, 236, 356
HpyAV	CCTTC	4 cut(s)	652, 1231, 1320, 1964
HpyCH4III	ACNGT	6 cut(s)	24, 1044, 1271, 1504, 1696, 2017
HpyCH4IV	ACGT	5 cut(s)	78, 243, 255, 285, 1705
HpyF10VI	GCNNNNNNNGC	7 cut(s)	346, 384, 604, 1133, 1667, 1766, 2192
HpyF3I	CTNAG	7 cut(s)	584, 996, 1089, 1354, 2065, 2079, 2162
HpySE526I	ACGT	5 cut(s)	78, 243, 255, 285, 1705
Hsp92I	GRCGYC	2 cut(s)	78, 234
HspAI	GCGC	7 cut(s)	94, 126, 163, 291, 325, 398, 1127
Kpn2I	TCCGGA	1 cut(s)	1117
Kzo9I	GATC	8 cut(s)	13, 27, 133, 493, 674, 1092, 1114, 1494
LmnI	GCTCC	7 cut(s)	83, 170, 345, 484, 712, 1564, 1678
Lsp1109I	GCAGC	4 cut(s)	529, 563, 1824, 1841
LweI	GCATC	2 cut(s)	1041, 1914
MaeI	CTAG	1 cut(s)	1998
MaeII	ACGT	5 cut(s)	78, 243, 255, 285, 1705
MaeIII	GTNAC	3 cut(s)	647, 1696, 1842
MalI	GATC	8 cut(s)	15, 29, 135, 495, 676, 1094, 1116, 1496
MboI	GATC	8 cut(s)	13, 27, 133, 493, 674, 1092, 1114, 1494
MfeI	CAATTG	2 cut(s)	789, 2187
MflI	RGATCY	3 cut(s)	13, 133, 1114
MhlI	GDGCHC	4 cut(s)	309, 822, 1437, 1542
MlyI	GAGTC	4 cut(s)	14, 428, 515, 1999
MmeI	TCCRAC	4 cut(s)	61, 192, 255, 276
MroI	TCCGGA	1 cut(s)	1117
MroXI	GAANNNNTTC	2 cut(s)	1454, 1581
MseI	TTAA	6 cut(s)	390, 741, 771, 1611, 1782, 2175
MslI	CAYNNNNRTG	3 cut(s)	576, 1283, 2045
MspA1I	CMGCKG	1 cut(s)	1595
MspI	CCGG	2 cut(s)	346, 1118
MspR9I	CCNGG	3 cut(s)	131, 209, 410
MunI	CAATTG	2 cut(s)	789, 2187
Mva1269I	GAATGC	2 cut(s)	1672, 1831
MvaI	CCWGG	3 cut(s)	131, 209, 410
MvnI	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
MwoI	GCNNNNNNNGC	7 cut(s)	346, 384, 604, 1133, 1667, 1766, 2192
NcoI	CCATGG	1 cut(s)	1790
NdeII	GATC	8 cut(s)	13, 27, 133, 493, 674, 1092, 1114, 1494
NlaIV	GGNNCC	7 cut(s)	15, 40, 85, 569, 1002, 1116, 1378
NmeAIII	GCCGAG	4 cut(s)	70, 1155, 2014, 2164
NmuCI	GTSAC	2 cut(s)	1696, 1842
NspI	RCATGY	1 cut(s)	1262
PaeR7I	CTCGAG	1 cut(s)	683
PaqCI	CACCTGC	1 cut(s)	275
PceI	AGGCCT	1 cut(s)	1953
PcsI	WCGNNNNNNNCGW	4 cut(s)	42, 228, 240, 282
PctI	GAATGC	2 cut(s)	1672, 1831
PdmI	GAANNNNTTC	2 cut(s)	1454, 1581
PfeI	GAWTC	6 cut(s)	458, 473, 524, 875, 1868, 2083
PflFI	GACNNNGTC	3 cut(s)	221, 242, 284
PkrI	GCNGC	6 cut(s)	427, 519, 553, 1831, 1839, 2194
PleI	GAGTC	4 cut(s)	13, 427, 514, 1999
PpsI	GAGTC	4 cut(s)	13, 427, 514, 1999
Ppu21I	YACGTR	1 cut(s)	1706
PpuMI	RGGWCCY	2 cut(s)	211, 2111
Psp124BI	GAGCTC	1 cut(s)	309
Psp5II	RGGWCCY	2 cut(s)	211, 2111
Psp6I	CCWGG	3 cut(s)	129, 207, 408
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	3 cut(s)	129, 207, 408
PspN4I	GGNNCC	7 cut(s)	15, 40, 85, 569, 1002, 1116, 1378
PspPI	GGNCC	8 cut(s)	211, 298, 369, 559, 568, 1001, 2111, 2194
PspPPI	RGGWCCY	2 cut(s)	211, 2111
PspXI	VCTCGAGB	1 cut(s)	683
PstI	CTGCAG	3 cut(s)	553, 1314, 1842
PstNI	CAGNNNCTG	1 cut(s)	1760
PsuI	RGATCY	3 cut(s)	13, 133, 1114
PsyI	GACNNNGTC	3 cut(s)	221, 242, 284
PvuII	CAGCTG	1 cut(s)	1595
RsaI	GTAC	2 cut(s)	905, 1403
RsaNI	GTAC	2 cut(s)	904, 1402
RseI	CAYNNNNRTG	3 cut(s)	576, 1283, 2045
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	6 cut(s)	390, 741, 771, 1611, 1782, 2175
SatI	GCNGC	6 cut(s)	426, 518, 552, 1830, 1838, 2193
Sau3AI	GATC	8 cut(s)	13, 27, 133, 493, 674, 1092, 1114, 1494
Sau96I	GGNCC	8 cut(s)	211, 298, 369, 559, 568, 1001, 2111, 2194
SchI	GAGTC	4 cut(s)	14, 428, 515, 1999
ScrFI	CCNGG	3 cut(s)	131, 209, 410
SduI	GDGCHC	4 cut(s)	309, 822, 1437, 1542
SfaNI	GCATC	2 cut(s)	1041, 1914
SfcI	CTRYAG	4 cut(s)	549, 632, 1310, 1838
Sfr274I	CTCGAG	1 cut(s)	683
SinI	GGWCC	6 cut(s)	211, 298, 369, 559, 568, 2111
SlaI	CTCGAG	1 cut(s)	683
SmiMI	CAYNNNNRTG	3 cut(s)	576, 1283, 2045
SmlI	CTYRAG	4 cut(s)	652, 683, 1102, 2198
SmoI	CTYRAG	4 cut(s)	652, 683, 1102, 2198
SseBI	AGGCCT	1 cut(s)	1953
SsiI	CCGC	5 cut(s)	42, 301, 425, 1769, 2192
SspMI	CTAG	1 cut(s)	1998
SstI	GAGCTC	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	1953
StyD4I	CCNGG	3 cut(s)	129, 207, 408
StyI	CCWWGG	2 cut(s)	294, 1790
TaaI	ACNGT	6 cut(s)	24, 1044, 1271, 1504, 1696, 2017
TaiI	ACGT	5 cut(s)	81, 246, 258, 288, 1708
TatI	WGTACW	1 cut(s)	903
TauI	GCSGC	2 cut(s)	428, 2195
TfiI	GAWTC	6 cut(s)	458, 473, 524, 875, 1868, 2083
Tru1I	TTAA	6 cut(s)	390, 741, 771, 1611, 1782, 2175
Tru9I	TTAA	6 cut(s)	390, 741, 771, 1611, 1782, 2175
TscAI	CASTG	2 cut(s)	1362, 1722
TseFI	GTSAC	2 cut(s)	1696, 1842
TseI	GCWGC	4 cut(s)	517, 551, 1829, 1837
Tsp45I	GTSAC	2 cut(s)	1696, 1842
TspDTI	ATGAA	6 cut(s)	580, 974, 1069, 1422, 1799, 1864
TspGWI	ACGGA	2 cut(s)	53, 1700
TspRI	CASTG	2 cut(s)	1362, 1722
Tth111I	GACNNNGTC	3 cut(s)	221, 242, 284
VpaK11BI	GGWCC	6 cut(s)	211, 298, 369, 559, 568, 2111
XapI	RAATTY	4 cut(s)	961, 1076, 1892, 2104
XceI	RCATGY	1 cut(s)	1262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1285
XhoI	CTCGAG	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	631
XmnI	GAANNNNTTC	2 cut(s)	1454, 1581
XspI	CTAG	1 cut(s)	1998
ZraI	GACGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.