Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Reverse (-)

20207504 .. 20208652

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0114500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTTTGATGTGGAGAATGTCAGGGAGATGGTGGATAACTTTGGAGAGTTCATTAAGATGGATGACCCTCTTGAAGGTGAAGAAGGCACCTACAGTTTTCTCCGTGTCAAAATCCTTCTTGATGCTCGTGATCCCCTACCCACGGGCTATGAACTTCCGAGAGAGAATGGAACCAAGAAATGGGTTAGTTTTGCTTACGAGAAATTGTCCGATTTTTGTTATGTGTGTGGGAGATTGGGACATACTGATTTACCAAGAACTCCATGCCCCCATGGAGCTAATCCGGAGAATGAAAATGAGTATGGAGATTGGCTTAGAGCATTACCACCCCGGAGGCAAATCAGGAATGATCATTCACAGGTTAAGACGACAAGTGGTCGGAATAGAAGGAGGTTTCCCGGCCAAACTATTCAACCTGTGGAGAGCAAAGACAACTGTCAGGAGTCACAACCCCAAGGAGCCTCTTCAAGTCACATCAGTGAACTTCACCCACAACACTCAACCCCCTCTGCCTTGTTACAACTTTCTGACACGGGTGCCCATGCCTCTACTGTCAACCACTGTGATAGCAACAACACAAAGGCTTTGCTAAGGGAACATTCAAGGTACCCCACTATCCAACCAGTACCAAACCTTAATAATAATTTTATTCCTTCCCCTCCACCTGGTTTTGATCCCCTCCCAACTAGCGTCTCAAGTACCTTTTTCCTAGGACAAAACCAGAATGGGACAAATGGGGGCAATTTTGCCTACCCGTGGCTTTTTAATCAGGGCAACAACCCTGATAATGTTAACCCAGCTGCACTTGCCACTCTTTTTGCACGTTCTTTTCCCCAAATGCCCTTGTGTTCCAATTACCCTTACCCCATTTCATCATCGGTTAACTTTTCCCCAATACTTCCACCACAAATCTTCACCACAAATACCCAAGACCCTCCCTCCTCACCCATCCAAGGCCAAGCAAAAAGACCTTTTCAGACTGAGAAGACCCATGCTCCCCCAGCAAGGAAGTTAAGGAAATTCACCAAACATTCCACCTCCAGAACTGAGACTTTAGTGTTGAATTCTGAGGGTGTGAATAATGGATGTTCAACGAGTAAAAGCGTTGAAGGCGGTGGTGGCTCGTCTACAGCCACAAGGTCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

382

Amino Acids

42.21

Weight (kDa)

7.16

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC_4	PF14392	40 - 83	1.3e-10	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	606
AccB1I	GGYRCC	3 cut(s)	86, 536, 606
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccI	GTMKAC	1 cut(s)	1127
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	1 cut(s)	1113
AclWI	GGATC	2 cut(s)	125, 668
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	2 cut(s)	1019, 1063
AfaI	GTAC	3 cut(s)	608, 627, 700
AfiI	CCNNNNNNNGG	7 cut(s)	74, 142, 180, 665, 756, 953, 1005
AgsI	TTSAA	7 cut(s)	74, 413, 468, 603, 1063, 1092, 1109
AhdI	GACNNNNNGTC	1 cut(s)	375
AjnI	CCWGG	1 cut(s)	664
AleI	CACNNNNGTG	1 cut(s)	477
AluBI	AGCT	2 cut(s)	278, 800
AluI	AGCT	2 cut(s)	278, 800
Alw26I	GTCTC	2 cut(s)	697, 1043
AlwI	GGATC	2 cut(s)	125, 668
Aor13HI	TCCGGA	1 cut(s)	283
AoxI	GGCC	2 cut(s)	400, 955
ApeKI	GCWGC	1 cut(s)	800
ApoI	RAATTY	2 cut(s)	1019, 1063
Asp718I	GGTACC	1 cut(s)	606
AspA2I	CCTAGG	1 cut(s)	709
AsuC2I	CCSGG	2 cut(s)	331, 399
AsuHPI	GGTGA	5 cut(s)	89, 479, 907, 936, 1015
AvrII	CCTAGG	1 cut(s)	709
BaeGI	GKGCMC	1 cut(s)	541
BanI	GGYRCC	3 cut(s)	86, 536, 606
BauI	CACGAG	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	992
BbvI	GCAGC	1 cut(s)	787
BccI	CCATC	3 cut(s)	22, 52, 956
BciT130I	CCWGG	1 cut(s)	666
BclI	TGATCA	1 cut(s)	349
BcnI	CCSGG	2 cut(s)	331, 399
BcoDI	GTCTC	2 cut(s)	697, 1043
BfaI	CTAG	2 cut(s)	687, 710
BfmI	CTRYAG	2 cut(s)	91, 1128
BisI	GCNGC	1 cut(s)	801
BlnI	CCTAGG	1 cut(s)	709
BlsI	GCNGC	1 cut(s)	802
Bme1390I	CCNGG	3 cut(s)	331, 399, 666
BmeRI	GACNNNNNGTC	1 cut(s)	375
BmiI	GGNNCC	5 cut(s)	88, 172, 460, 538, 608
BmrFI	CCNGG	3 cut(s)	331, 399, 666
BmsI	GCATC	1 cut(s)	112
BoxI	GACNNNNGTC	1 cut(s)	435
BpiI	GAAGAC	1 cut(s)	992
BpmI	CTGGAG	1 cut(s)	1024
Bpu10I	CCTNAGC	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	679
BpuMI	CCSGG	2 cut(s)	331, 399
BsaJI	CCNNGG	7 cut(s)	141, 271, 329, 454, 709, 755, 952
BsaWI	WCCGGW	1 cut(s)	283
BsaXI	ACNNNNNCTCC	5 cut(s)	923, 953, 979, 1009, 1126
Bsc4I	CCNNNNNNNGG	7 cut(s)	74, 142, 180, 665, 756, 953, 1005
Bse1I	ACTGG	1 cut(s)	623
BseAI	TCCGGA	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	7 cut(s)	141, 271, 329, 454, 709, 755, 952
BseGI	GGATG	3 cut(s)	67, 948, 1091
BseLI	CCNNNNNNNGG	7 cut(s)	74, 142, 180, 665, 756, 953, 1005
BseMII	CTCAG	3 cut(s)	972, 1038, 1059
BseNI	ACTGG	1 cut(s)	623
BseRI	GAGGAG	1 cut(s)	931
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	1 cut(s)	787
BseYI	CCCAGC	2 cut(s)	796, 1000
BsgI	GTGCAG	1 cut(s)	786
BshFI	GGCC	2 cut(s)	402, 957
BshNI	GGYRCC	3 cut(s)	86, 536, 606
BsiSI	CCGG	3 cut(s)	284, 331, 399
BslFI	GGGAC	2 cut(s)	252, 742
BslI	CCNNNNNNNGG	7 cut(s)	74, 142, 180, 665, 756, 953, 1005
BsmAI	GTCTC	2 cut(s)	697, 1043
BsmBI	CGTCTC	1 cut(s)	697
BsmFI	GGGAC	2 cut(s)	252, 742
BsnI	GGCC	2 cut(s)	402, 957
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp13I	TCCGGA	1 cut(s)	283
Bsp143I	GATC	3 cut(s)	130, 349, 673
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	1 cut(s)	1113
BspANI	GGCC	2 cut(s)	402, 957
BspCNI	CTCAG	3 cut(s)	973, 1039, 1060
BspEI	TCCGGA	1 cut(s)	283
BspLI	GGNNCC	5 cut(s)	88, 172, 460, 538, 608
BspPI	GGATC	2 cut(s)	125, 668
BspT107I	GGYRCC	3 cut(s)	86, 536, 606
BsrI	ACTGG	1 cut(s)	623
BssECI	CCNNGG	7 cut(s)	141, 271, 329, 454, 709, 755, 952
BssMI	GATC	3 cut(s)	130, 349, 673
BssSI	CACGAG	1 cut(s)	126
BssT1I	CCWWGG	4 cut(s)	271, 454, 709, 952
Bst2BI	CACGAG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	4 cut(s)	95, 437, 553, 563
Bst6I	CTCTTC	1 cut(s)	469
BstDEI	CTNAG	5 cut(s)	314, 590, 981, 1047, 1068
BstDSI	CCRYGG	3 cut(s)	141, 271, 755
BstENI	CCTNNNNNAGG	1 cut(s)	72
BstF5I	GGATG	3 cut(s)	67, 948, 1091
BstKTI	GATC	3 cut(s)	133, 352, 676
BstMAI	GTCTC	2 cut(s)	697, 1043
BstMBI	GATC	3 cut(s)	130, 349, 673
BstMWI	GCNNNNNNNGC	4 cut(s)	806, 1001, 1110, 1119
BstNI	CCWGG	1 cut(s)	666
BstPAI	GACNNNNGTC	1 cut(s)	435
BstSCI	CCNGG	3 cut(s)	329, 397, 664
BstSFI	CTRYAG	2 cut(s)	91, 1128
BstSLI	GKGCMC	1 cut(s)	541
BstV1I	GCAGC	1 cut(s)	787
BstV2I	GAAGAC	1 cut(s)	992
BsuRI	GGCC	2 cut(s)	402, 957
BtgI	CCRYGG	3 cut(s)	141, 271, 755
BtsCI	GGATG	3 cut(s)	67, 948, 1091
BtsIMutI	CAGTG	2 cut(s)	484, 559
CseI	GACGC	1 cut(s)	679
CsiI	ACCWGGT	1 cut(s)	664
Csp6I	GTAC	3 cut(s)	607, 626, 699
CspCI	CAANNNNNGTGG	2 cut(s)	799, 834
CviAII	CATG	5 cut(s)	264, 272, 542, 992, 1146
CviQI	GTAC	3 cut(s)	607, 626, 699
DdeI	CTNAG	5 cut(s)	314, 590, 981, 1047, 1068
DpnI	GATC	3 cut(s)	132, 351, 675
DpnII	GATC	3 cut(s)	130, 349, 673
DriI	GACNNNNNGTC	1 cut(s)	375
EaeI	YGGCCR	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	469
Eam1105I	GACNNNNNGTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	469
Eco130I	CCWWGG	4 cut(s)	271, 454, 709, 952
EcoNI	CCTNNNNNAGG	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	1063
EcoRII	CCWGG	1 cut(s)	664
EcoT14I	CCWWGG	4 cut(s)	271, 454, 709, 952
ErhI	CCWWGG	4 cut(s)	271, 454, 709, 952
Esp3I	CGTCTC	1 cut(s)	697
FaeI	CATG	5 cut(s)	267, 275, 545, 995, 1149
FaiI	YATR	9 cut(s)	150, 222, 243, 265, 273, 303, 543, 993, 1147
FaqI	GGGAC	2 cut(s)	252, 742
FatI	CATG	5 cut(s)	263, 271, 541, 991, 1145
FbaI	TGATCA	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	1127
Fnu4HI	GCNGC	1 cut(s)	801
FokI	GGATG	3 cut(s)	74, 935, 1098
Fsp4HI	GCNGC	1 cut(s)	801
FspBI	CTAG	2 cut(s)	687, 710
GluI	GCNGC	1 cut(s)	801
GsaI	CCCAGC	2 cut(s)	800, 1004
GsuI	CTGGAG	1 cut(s)	1024
HaeIII	GGCC	2 cut(s)	402, 957
HapII	CCGG	3 cut(s)	284, 331, 399
HgaI	GACGC	1 cut(s)	679
Hin1II	CATG	5 cut(s)	267, 275, 545, 995, 1149
HincII	GTYRAC	3 cut(s)	556, 793, 883
HindII	GTYRAC	3 cut(s)	556, 793, 883
HinfI	GANTC	1 cut(s)	443
HpaI	GTTAAC	2 cut(s)	793, 883
HpaII	CCGG	3 cut(s)	284, 331, 399
HphI	GGTGA	5 cut(s)	89, 479, 907, 936, 1015
Hpy166II	GTNNAC	5 cut(s)	482, 556, 793, 883, 1128
Hpy188I	TCNGA	6 cut(s)	159, 211, 381, 529, 978, 1069
Hpy188III	TCNNGA	7 cut(s)	71, 119, 128, 284, 343, 440, 1041
Hpy8I	GTNNAC	5 cut(s)	482, 556, 793, 883, 1128
HpyAV	CCTTC	6 cut(s)	68, 77, 125, 381, 663, 1103
HpyCH4III	ACNGT	4 cut(s)	95, 437, 553, 563
HpyCH4IV	ACGT	1 cut(s)	823
HpyCH4V	TGCA	2 cut(s)	803, 821
HpyF10VI	GCNNNNNNNGC	4 cut(s)	806, 1001, 1110, 1119
HpyF3I	CTNAG	5 cut(s)	314, 590, 981, 1047, 1068
HpySE526I	ACGT	1 cut(s)	823
Hsp92II	CATG	5 cut(s)	267, 275, 545, 995, 1149
Kpn2I	TCCGGA	1 cut(s)	283
KpnI	GGTACC	1 cut(s)	610
Ksp22I	TGATCA	1 cut(s)	349
KspAI	GTTAAC	2 cut(s)	793, 883
Kzo9I	GATC	3 cut(s)	130, 349, 673
LmnI	GCTCC	3 cut(s)	275, 458, 1000
Lsp1109I	GCAGC	1 cut(s)	787
LweI	GCATC	1 cut(s)	112
MabI	ACCWGGT	1 cut(s)	664
MaeI	CTAG	2 cut(s)	687, 710
MaeII	ACGT	1 cut(s)	823
MaeIII	GTNAC	3 cut(s)	444, 470, 516
MalI	GATC	3 cut(s)	132, 351, 675
MboI	GATC	3 cut(s)	130, 349, 673
MboII	GAAGA	4 cut(s)	92, 456, 904, 997
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	6 cut(s)	203, 643, 742, 853, 1019, 1063
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	2 cut(s)	359, 643
MroI	TCCGGA	1 cut(s)	283
MseI	TTAA	7 cut(s)	54, 363, 636, 765, 792, 882, 1013
MslI	CAYNNNNRTG	2 cut(s)	56, 477
MspA1I	CMGCKG	1 cut(s)	800
MspI	CCGG	3 cut(s)	284, 331, 399
MspR9I	CCNGG	3 cut(s)	331, 399, 666
MvaI	CCWGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	4 cut(s)	806, 1001, 1110, 1119
NciI	CCSGG	2 cut(s)	331, 399
NcoI	CCATGG	1 cut(s)	271
NdeII	GATC	3 cut(s)	130, 349, 673
NlaIII	CATG	5 cut(s)	267, 275, 545, 995, 1149
NlaIV	GGNNCC	5 cut(s)	88, 172, 460, 538, 608
NmuCI	GTSAC	2 cut(s)	444, 470
OliI	CACNNNNGTG	1 cut(s)	477
PflMI	CCANNNNNTGG	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	802
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PshAI	GACNNNNGTC	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	664
PspFI	CCCAGC	2 cut(s)	796, 1000
PspGI	CCWGG	1 cut(s)	664
PspN4I	GGNNCC	5 cut(s)	88, 172, 460, 538, 608
PvuII	CAGCTG	1 cut(s)	800
RsaI	GTAC	3 cut(s)	608, 627, 700
RsaNI	GTAC	3 cut(s)	607, 626, 699
RseI	CAYNNNNRTG	2 cut(s)	56, 477
SaqAI	TTAA	7 cut(s)	54, 363, 636, 765, 792, 882, 1013
SatI	GCNGC	1 cut(s)	801
Sau3AI	GATC	3 cut(s)	130, 349, 673
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	3 cut(s)	331, 399, 666
SduI	GDGCHC	1 cut(s)	541
SexAI	ACCWGGT	1 cut(s)	664
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	2 cut(s)	91, 1128
SmiMI	CAYNNNNRTG	2 cut(s)	56, 477
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
Sse9I	AATT	6 cut(s)	203, 643, 742, 853, 1019, 1063
SsiI	CCGC	1 cut(s)	1113
SspMI	CTAG	2 cut(s)	687, 710
StyD4I	CCNGG	3 cut(s)	329, 397, 664
StyI	CCWWGG	4 cut(s)	271, 454, 709, 952
TaaI	ACNGT	4 cut(s)	95, 437, 553, 563
TaiI	ACGT	1 cut(s)	826
TasI	AATT	6 cut(s)	203, 643, 742, 853, 1019, 1063
Tru1I	TTAA	7 cut(s)	54, 363, 636, 765, 792, 882, 1013
Tru9I	TTAA	7 cut(s)	54, 363, 636, 765, 792, 882, 1013
TscAI	CASTG	2 cut(s)	484, 566
TseFI	GTSAC	2 cut(s)	444, 470
TseI	GCWGC	1 cut(s)	800
Tsp45I	GTSAC	2 cut(s)	444, 470
TspDTI	ATGAA	4 cut(s)	40, 165, 306, 861
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	2 cut(s)	484, 566
Van91I	CCANNNNNTGG	1 cut(s)	180
XagI	CCTNNNNNAGG	1 cut(s)	72
XapI	RAATTY	2 cut(s)	1019, 1063
XmaJI	CCTAGG	1 cut(s)	709
XmiI	GTMKAC	1 cut(s)	1127
XspI	CTAG	2 cut(s)	687, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.