Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Forward (+)

30263488 .. 30266930

Gene Structure 3443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG143500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2214 bp

ATGGAGTCGTCGGATCCACCACCGTCGATCAACTTCGGCACCGCCGAGGCTCTCGACCACATCCGTAGCCTCACCGACGTGGGAGCCATGACGCGCCTCCTCCACGAGTGCATAGCCTACCAACGCGCCCTGGATCTCAACCTCGACCACCTCCTCTCCCAGCGCTCCGACCTCGACAAGCACCTCTCCAATCTCCAGAAATCCTCCCAGGTCCTCGACATCGTCAAGTCCGACGCCGACCACGTCCTCTCCAACGTCTCCTCCACCTGCGACCTCGCCGACCACGTCAGCGCCAAGGTCCGCGAGCTCGACCTCGCCCAGTCGCGCGTCAACTCCACGCTCCTCCGGCTTGACGCGATTGTGGAGAGGACCAACTGCATTGACGGCGTTAAGCAGGCGCTTGACGGCCAGGACTACGAGTCTGCGGCGAAGTTCGTGCAGAGGTTTACGCAGATTGAGTCGGAGTATAGGGATTCGGGTTCAGGTTCTGAGCAGAGGGATCAGCTCATGGAGTCGAAGAAGCAGCTCGAATCGATTGTGAAGAAGAAGCTATCTGCAGCCGTGGACCAGAGGGACCATCCCAATGTGCTGAGGTTCATTAGGCTCTACACGCCGTTAGGGATAGAAGAGGAGGGTCTACAGGCGTATGTGAGTTACTTGAGGAAGGTGATTGGGATGAGATCGAGGCTCGAATTCGAGCATTTGATGGAGTTGATGGAGCAGAAGAACAATCAGAAGCAGCAGGTTAATTTTGTGGGGTGTTTGACCAATTTGTTCAAGGACATTGTGTTGGCAATTGAAGAGAATGACGAGATTTTGAGGGGGCTCTGTGGGGAAGATGGGATTGTTTATGCTATTTGTGAGCTTCAAGAGGAGTGTGATTCGAGGGGGACTTTGATTTTGAAGAAGTACATGGAGTATAGGAGATTGCCAAAGTTGTCATCGGAGATAAATGCACAGAATATGAATTTGCTTGATGTTGGTGTTGCTGGTGTTGGGTCTGAGGGGCCTGACCCGAGAGAGGTTGAGCTTATATTGGAGGAGATACTGTCTTTGATGCAGTTGGGTGAGGATTATACTGAATTCATGGTGTCTAAGATCAAGGGCTTGAGTAATGTGGATCCGGATTTAGCGCCGAGAGCAACCAAGTCTTTTAGGAGTGGAAGTTTTAGCAAAGTGGTTCAGGACATTACTGGGTTTTATGTCATATTAGAGGGTTTCTTTATGGTTGAGAATGTGAGGAAGGCTATAAGGATTGATGAGCATGTGCCTGACAGTCTTACCACTTCTATGGTGGATGATGTTTTCTATGTTCTGCAGAGTTGCTTGCGAAGGGCGATATCCACTTTGAATATCAGCTCAGTGATTGCTGTGTTGAGTGGTGCCAGTAGTTTGTTGAGTAATGAGTACCATGAAGCTTTGCAACACAAGATGAGAGAGCCCAATCTTGGTGCGAAGCTGTTCTTGGGTGGTGTTGGTGTTCAAAAGACTGGCACAGAGATCGCTACGGTTTTGAATAATATGGATGTGAGTAGTGAGTATGTGCTCAAACTGAAACACGAAATTGAGGAGCAATGTTTGGAAGTATTTCCTGCACCGGCTGATAGAGAAAAAGTTAAGTCTTGTTTGTCCGAGTTAGGGGATATGAGCAATACATTCAAGCAAGCTTTGAATGCTGGCTTGGAGCAACTTGTGGCAACTGTGACACCACGTATCCGTCCAGTGCTTGATAATGTTGCAACCATCAGCTATGAGCTATCAGAGGCTGAATATGCGGACAATGAGGTTAATGACCCATGGGTTCAAGGGCTTCTTCATGCTGTTGAGACGAATGCAGCATGGCTGCAGTCACTAATGACTGCCAACAACTACGATTCGTTCATACATTTGATAATTGAATTCCTTGTGAAGAGGCTTGAAGTAATTATGATGCAGAAAAGATTTAGTCAACTTGGAGGCCTTCAGCTCGACAGAGATTGTAGGGCATTGGTGAGCCACTTTTCTAGCATGACTCAAAGAACTGTTAGAGACAAGTTTGCTCGGCTCACTCAAATGGCAACCATCCTCAACTTAGAAAAGGTCTCTGAGATTCTGGATTTCTGGGGTGAGAATTCAGGACCTATGACATGGAGACTGACACCAGCCGAGGTCAGGCGAGTTTTGGGTCTGAGAGTTGATTTTAAATCCGAAGCAATTGCGGCCCTCAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

737

Amino Acids

82.78

Weight (kDa)

5.11

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG4_N	PF20663	62 - 155	9.7e-28	Conserved oligomeric Golgi complex subunit 4, N-terminal
COG4_m	PF08318	198 - 478	1.2e-75	COG4 transport protein, middle alpha-helical bundle
COG4_C	PF20662	503 - 719	3.1e-63	Conserved oligomeric Golgi complex subunit 4, C-terminal
RINT1_TIP1	PF04437	555 - 694	1.6e-08	RINT-1/TIP-1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	275
Acc36I	ACCTGC	2 cut(s)	275, 733
AccB1I	GGYRCC	2 cut(s)	38, 1382
AccI	GTMKAC	1 cut(s)	637
AccII	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
AccIII	TCCGGA	1 cut(s)	1123
AciI	CCGC	5 cut(s)	42, 301, 425, 1775, 2198
AclWI	GGATC	6 cut(s)	8, 21, 141, 507, 1115, 1128
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	5 cut(s)	692, 967, 1082, 1898, 2110
AcuI	CTGAAG	1 cut(s)	1946
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	2 cut(s)	911, 1409
AfeI	AGCGCT	1 cut(s)	164
AfiI	CCNNNNNNNGG	4 cut(s)	1021, 1448, 1638, 2151
AhdI	GACNNNNNGTC	1 cut(s)	418
AjiI	CACGTC	3 cut(s)	79, 244, 286
AjnI	CCWGG	3 cut(s)	129, 207, 408
AjuI	GAANNNNNNNTTGG	4 cut(s)	1448, 1480, 1664, 1696
AleI	CACNNNNGTG	1 cut(s)	77
Alw21I	GWGCWC	2 cut(s)	309, 1548
Alw26I	GTCTC	5 cut(s)	262, 1820, 2022, 2086, 2125
AlwI	GGATC	6 cut(s)	8, 21, 141, 507, 1115, 1128
AlwNI	CAGNNNCTG	2 cut(s)	488, 1766
Ama87I	CYCGRG	1 cut(s)	1015
Aor13HI	TCCGGA	1 cut(s)	1123
Aor51HI	AGCGCT	1 cut(s)	164
AoxI	GGCC	4 cut(s)	406, 1007, 1957, 2199
ApeKI	GCWGC	5 cut(s)	523, 557, 739, 1835, 1843
ApoI	RAATTY	5 cut(s)	692, 967, 1082, 1898, 2110
ArsI	GACNNNNNNTTYG	2 cut(s)	883, 915
Asp700I	GAANNNNTTC	2 cut(s)	1460, 1587
AspLEI	GCGC	7 cut(s)	96, 128, 165, 293, 327, 400, 1135
AspS9I	GGNCC	8 cut(s)	211, 298, 369, 565, 574, 1007, 2117, 2200
AsuHPI	GGTGA	5 cut(s)	64, 679, 1079, 2002, 2117
AvaI	CYCGRG	1 cut(s)	1015
AvaII	GGWCC	6 cut(s)	211, 298, 369, 565, 574, 2117
BamHI	GGATCC	2 cut(s)	13, 1120
BanI	GGYRCC	2 cut(s)	38, 1382
BanII	GRGCYC	3 cut(s)	309, 828, 1443
BauI	CACGAG	1 cut(s)	104
Bbv12I	GWGCWC	2 cut(s)	309, 1548
BbvCI	CCTCAGC	1 cut(s)	590
BbvI	GCAGC	5 cut(s)	535, 569, 751, 1830, 1847
BccI	CCATC	6 cut(s)	585, 700, 709, 833, 1751, 2069
BceAI	ACGGC	4 cut(s)	400, 421, 545, 598
BcgI	CGANNNNNNTGC	6 cut(s)	418, 452, 1483, 1517, 2177, 2211
BciT130I	CCWGG	3 cut(s)	131, 209, 410
BciVI	GTATCC	1 cut(s)	1724
BcoDI	GTCTC	5 cut(s)	262, 1820, 2022, 2086, 2125
BfaI	CTAG	1 cut(s)	2004
BfmI	CTRYAG	4 cut(s)	555, 638, 1316, 1844
BfoI	RGCGCY	4 cut(s)	166, 294, 401, 1136
BfuAI	ACCTGC	2 cut(s)	275, 733
BfuI	GTATCC	1 cut(s)	1724
BisI	GCNGC	7 cut(s)	426, 524, 558, 740, 1836, 1844, 2199
BlsI	GCNGC	7 cut(s)	427, 525, 559, 741, 1837, 1845, 2200
Bme1390I	CCNGG	3 cut(s)	131, 209, 410
Bme18I	GGWCC	6 cut(s)	211, 298, 369, 565, 574, 2117
BmeRI	GACNNNNNGTC	1 cut(s)	418
BmeT110I	CYCGRG	1 cut(s)	1015
BmgBI	CACGTC	3 cut(s)	79, 244, 286
BmgT120I	GGNCC	8 cut(s)	211, 298, 369, 565, 574, 1007, 2117, 2200
BmiI	GGNNCC	7 cut(s)	15, 40, 85, 575, 1008, 1122, 1384
BmrFI	CCNGG	3 cut(s)	131, 209, 410
BmrI	ACTGGG	2 cut(s)	313, 1203
BmsI	GCATC	2 cut(s)	1047, 1920
BmuI	ACTGGG	2 cut(s)	313, 1203
BpmI	CTGGAG	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	590
BpuEI	CTTGAG	3 cut(s)	679, 1129, 2189
Bsa29I	ATCGAT	1 cut(s)	533
BsaAI	YACGTR	1 cut(s)	1712
BsaHI	GRCGYC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	2086
BsaJI	CCNNGG	7 cut(s)	45, 129, 207, 294, 561, 1796, 2145
BsaWI	WCCGGW	1 cut(s)	1123
Bsc4I	CCNNNNNNNGG	4 cut(s)	1021, 1448, 1638, 2151
Bse118I	RCCGGY	1 cut(s)	1597
Bse1I	ACTGG	5 cut(s)	319, 1198, 1386, 1495, 1721
Bse3DI	GCAATG	1 cut(s)	1580
BseAI	TCCGGA	1 cut(s)	1123
BseBI	CCWGG	3 cut(s)	131, 209, 410
BseCI	ATCGAT	1 cut(s)	533
BseDI	CCNNGG	7 cut(s)	45, 129, 207, 294, 561, 1796, 2145
BseGI	GGATG	6 cut(s)	60, 577, 681, 1303, 1531, 2061
BseLI	CCNNNNNNNGG	4 cut(s)	1021, 1448, 1638, 2151
BseMI	GCAATG	1 cut(s)	1580
BseMII	CTCAG	6 cut(s)	480, 581, 993, 1374, 2076, 2159
BseNI	ACTGG	5 cut(s)	319, 1198, 1386, 1495, 1721
BseRI	GAGGAG	8 cut(s)	89, 143, 250, 332, 644, 887, 1055, 1583
BseXI	GCAGC	5 cut(s)	535, 569, 751, 1830, 1847
BseYI	CCCAGC	1 cut(s)	159
BsgI	GTGCAG	2 cut(s)	458, 1578
Bsh1236I	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
BshFI	GGCC	4 cut(s)	408, 1009, 1959, 2201
BshNI	GGYRCC	2 cut(s)	38, 1382
BshVI	ATCGAT	1 cut(s)	533
BsiHKAI	GWGCWC	2 cut(s)	309, 1548
BsiHKCI	CYCGRG	1 cut(s)	1015
BsiSI	CCGG	3 cut(s)	346, 1124, 1598
BslFI	GGGAC	2 cut(s)	587, 904
BslI	CCNNNNNNNGG	4 cut(s)	1021, 1448, 1638, 2151
BsmAI	GTCTC	5 cut(s)	262, 1820, 2022, 2086, 2125
BsmBI	CGTCTC	2 cut(s)	262, 1820
BsmFI	GGGAC	2 cut(s)	587, 904
BsmI	GAATGC	2 cut(s)	1678, 1837
BsnI	GGCC	4 cut(s)	408, 1009, 1959, 2201
Bso31I	GGTCTC	1 cut(s)	2086
BsoBI	CYCGRG	1 cut(s)	1015
Bsp1286I	GDGCHC	4 cut(s)	309, 828, 1443, 1548
Bsp13I	TCCGGA	1 cut(s)	1123
Bsp143I	GATC	8 cut(s)	13, 27, 133, 499, 680, 1098, 1120, 1500
Bsp19I	CCATGG	1 cut(s)	1796
BspACI	CCGC	5 cut(s)	42, 301, 425, 1775, 2198
BspANI	GGCC	4 cut(s)	408, 1009, 1959, 2201
BspCNI	CTCAG	6 cut(s)	481, 582, 994, 1373, 2077, 2160
BspDI	ATCGAT	1 cut(s)	533
BspEI	TCCGGA	1 cut(s)	1123
BspFNI	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
BspLI	GGNNCC	7 cut(s)	15, 40, 85, 575, 1008, 1122, 1384
BspMAI	CTGCAG	3 cut(s)	559, 1320, 1848
BspMI	ACCTGC	2 cut(s)	275, 733
BspPI	GGATC	6 cut(s)	8, 21, 141, 507, 1115, 1128
BspT107I	GGYRCC	2 cut(s)	38, 1382
BspTNI	GGTCTC	1 cut(s)	2086
BsrDI	GCAATG	1 cut(s)	1580
BsrFI	RCCGGY	1 cut(s)	1597
BsrI	ACTGG	5 cut(s)	319, 1198, 1386, 1495, 1721
BssAI	RCCGGY	1 cut(s)	1597
BssECI	CCNNGG	7 cut(s)	45, 129, 207, 294, 561, 1796, 2145
BssMI	GATC	8 cut(s)	13, 27, 133, 499, 680, 1098, 1120, 1500
BssNI	GRCGYC	1 cut(s)	234
BssSI	CACGAG	1 cut(s)	104
BssT1I	CCWWGG	2 cut(s)	294, 1796
Bst2BI	CACGAG	1 cut(s)	104
Bst2UI	CCWGG	3 cut(s)	131, 209, 410
Bst4CI	ACNGT	6 cut(s)	24, 1050, 1277, 1510, 1702, 2023
Bst6I	CTCTTC	3 cut(s)	621, 795, 1904
BstACI	GRCGYC	1 cut(s)	234
BstBAI	YACGTR	1 cut(s)	1712
BstC8I	GCNNGC	5 cut(s)	305, 396, 1328, 1665, 1678
BstDEI	CTNAG	8 cut(s)	489, 590, 1002, 1095, 1360, 2071, 2085, 2168
BstDSI	CCRYGG	2 cut(s)	561, 1796
BstF5I	GGATG	6 cut(s)	60, 577, 681, 1303, 1531, 2061
BstFNI	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
BstH2I	RGCGCY	4 cut(s)	166, 294, 401, 1136
BstHHI	GCGC	7 cut(s)	96, 128, 165, 293, 327, 400, 1135
BstKTI	GATC	8 cut(s)	16, 30, 136, 502, 683, 1101, 1123, 1503
BstMAI	GTCTC	5 cut(s)	262, 1820, 2022, 2086, 2125
BstMBI	GATC	8 cut(s)	13, 27, 133, 499, 680, 1098, 1120, 1500
BstMWI	GCNNNNNNNGC	7 cut(s)	346, 384, 610, 1139, 1673, 1772, 2198
BstNI	CCWGG	3 cut(s)	131, 209, 410
BstNSI	RCATGY	1 cut(s)	1268
BstSCI	CCNGG	3 cut(s)	129, 207, 408
BstSFI	CTRYAG	4 cut(s)	555, 638, 1316, 1844
BstUI	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
BstV1I	GCAGC	5 cut(s)	535, 569, 751, 1830, 1847
BstX2I	RGATCY	3 cut(s)	13, 133, 1120
BstXI	CCANNNNNNTGG	1 cut(s)	1291
BstYI	RGATCY	3 cut(s)	13, 133, 1120
Bsu15I	ATCGAT	1 cut(s)	533
BsuI	GTATCC	1 cut(s)	1724
BsuRI	GGCC	4 cut(s)	408, 1009, 1959, 2201
BsuTUI	ATCGAT	1 cut(s)	533
BtgI	CCRYGG	2 cut(s)	561, 1796
BtrI	CACGTC	3 cut(s)	79, 244, 286
BtsCI	GGATG	6 cut(s)	60, 577, 681, 1303, 1531, 2061
BtsIMutI	CAGTG	2 cut(s)	1368, 1728
BveI	ACCTGC	2 cut(s)	275, 733
Cac8I	GCNNGC	5 cut(s)	305, 396, 1328, 1665, 1678
CaiI	CAGNNNCTG	2 cut(s)	488, 1766
CfoI	GCGC	7 cut(s)	96, 128, 165, 293, 327, 400, 1135
Cfr10I	RCCGGY	1 cut(s)	1597
Cfr13I	GGNCC	8 cut(s)	211, 298, 369, 565, 574, 1007, 2117, 2200
ClaI	ATCGAT	1 cut(s)	533
CseI	GACGC	4 cut(s)	100, 242, 316, 362
Csp6I	GTAC	2 cut(s)	910, 1408
CviQI	GTAC	2 cut(s)	910, 1408
DdeI	CTNAG	8 cut(s)	489, 590, 1002, 1095, 1360, 2071, 2085, 2168
DpnI	GATC	8 cut(s)	15, 29, 135, 501, 682, 1100, 1122, 1502
DpnII	GATC	8 cut(s)	13, 27, 133, 499, 680, 1098, 1120, 1500
DraI	TTTAAA	1 cut(s)	2182
DriI	GACNNNNNGTC	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	3 cut(s)	621, 795, 1904
Eam1105I	GACNNNNNGTC	1 cut(s)	418
EarI	CTCTTC	3 cut(s)	621, 795, 1904
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	2 cut(s)	294, 1796
Eco147I	AGGCCT	1 cut(s)	1959
Eco24I	GRGCYC	3 cut(s)	309, 828, 1443
Eco31I	GGTCTC	1 cut(s)	2086
Eco32I	GATATC	1 cut(s)	1341
Eco47I	GGWCC	6 cut(s)	211, 298, 369, 565, 574, 2117
Eco47III	AGCGCT	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	1946
Eco88I	CYCGRG	1 cut(s)	1015
EcoICRI	GAGCTC	1 cut(s)	307
EcoO109I	RGGNCCY	3 cut(s)	211, 1007, 2117
EcoRI	GAATTC	4 cut(s)	692, 1082, 1898, 2110
EcoRII	CCWGG	3 cut(s)	129, 207, 408
EcoRV	GATATC	1 cut(s)	1341
EcoT14I	CCWWGG	2 cut(s)	294, 1796
EcoT38I	GRGCYC	3 cut(s)	309, 828, 1443
ErhI	CCWWGG	2 cut(s)	294, 1796
Esp3I	CGTCTC	2 cut(s)	262, 1820
FalI	AAGNNNNNCTT	4 cut(s)	1448, 1480, 1797, 1829
FaqI	GGGAC	2 cut(s)	587, 904
FblI	GTMKAC	1 cut(s)	637
Fnu4HI	GCNGC	7 cut(s)	426, 524, 558, 740, 1836, 1844, 2199
FokI	GGATG	6 cut(s)	47, 564, 688, 1310, 1538, 2048
FriOI	GRGCYC	3 cut(s)	309, 828, 1443
Fsp4HI	GCNGC	7 cut(s)	426, 524, 558, 740, 1836, 1844, 2199
FspBI	CTAG	1 cut(s)	2004
GlaI	GCGC	7 cut(s)	95, 127, 164, 292, 326, 399, 1134
GluI	GCNGC	7 cut(s)	426, 524, 558, 740, 1836, 1844, 2199
GsaI	CCCAGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	179
HaeII	RGCGCY	4 cut(s)	166, 294, 401, 1136
HaeIII	GGCC	4 cut(s)	408, 1009, 1959, 2201
HapII	CCGG	3 cut(s)	346, 1124, 1598
HgaI	GACGC	4 cut(s)	100, 242, 316, 362
HhaI	GCGC	7 cut(s)	96, 128, 165, 293, 327, 400, 1135
Hin1I	GRCGYC	1 cut(s)	234
Hin6I	GCGC	7 cut(s)	94, 126, 163, 291, 325, 398, 1133
HinP1I	GCGC	7 cut(s)	94, 126, 163, 291, 325, 398, 1133
HincII	GTYRAC	2 cut(s)	331, 1949
HindII	GTYRAC	2 cut(s)	331, 1949
HindIII	AAGCTT	2 cut(s)	1416, 1665
HpaII	CCGG	3 cut(s)	346, 1124, 1598
HphI	GGTGA	5 cut(s)	64, 679, 1079, 2002, 2117
Hpy166II	GTNNAC	5 cut(s)	331, 447, 565, 638, 1949
Hpy188III	TCNNGA	7 cut(s)	53, 196, 869, 1124, 1184, 2093, 2115
Hpy8I	GTNNAC	5 cut(s)	331, 447, 565, 638, 1949
Hpy99I	CGWCG	4 cut(s)	13, 28, 80, 236
HpyAV	CCTTC	4 cut(s)	658, 1237, 1326, 1970
HpyCH4III	ACNGT	6 cut(s)	24, 1050, 1277, 1510, 1702, 2023
HpyCH4IV	ACGT	5 cut(s)	78, 243, 255, 285, 1711
HpyF10VI	GCNNNNNNNGC	7 cut(s)	346, 384, 610, 1139, 1673, 1772, 2198
HpyF3I	CTNAG	8 cut(s)	489, 590, 1002, 1095, 1360, 2071, 2085, 2168
HpySE526I	ACGT	5 cut(s)	78, 243, 255, 285, 1711
Hsp92I	GRCGYC	1 cut(s)	234
HspAI	GCGC	7 cut(s)	94, 126, 163, 291, 325, 398, 1133
Kpn2I	TCCGGA	1 cut(s)	1123
Kzo9I	GATC	8 cut(s)	13, 27, 133, 499, 680, 1098, 1120, 1500
LmnI	GCTCC	6 cut(s)	83, 170, 345, 718, 1570, 1684
Lsp1109I	GCAGC	5 cut(s)	535, 569, 751, 1830, 1847
LweI	GCATC	2 cut(s)	1047, 1920
MaeI	CTAG	1 cut(s)	2004
MaeII	ACGT	5 cut(s)	78, 243, 255, 285, 1711
MaeIII	GTNAC	3 cut(s)	653, 1702, 1848
MalI	GATC	8 cut(s)	15, 29, 135, 501, 682, 1100, 1122, 1502
MboI	GATC	8 cut(s)	13, 27, 133, 499, 680, 1098, 1120, 1500
MfeI	CAATTG	2 cut(s)	795, 2193
MflI	RGATCY	3 cut(s)	13, 133, 1120
MhlI	GDGCHC	4 cut(s)	309, 828, 1443, 1548
MlyI	GAGTC	5 cut(s)	14, 428, 467, 521, 2005
MmeI	TCCRAC	4 cut(s)	192, 255, 276, 441
MroI	TCCGGA	1 cut(s)	1123
MroXI	GAANNNNTTC	2 cut(s)	1460, 1587
MseI	TTAA	5 cut(s)	390, 747, 1617, 1788, 2181
MslI	CAYNNNNRTG	4 cut(s)	77, 582, 1289, 2051
MspI	CCGG	3 cut(s)	346, 1124, 1598
MspR9I	CCNGG	3 cut(s)	131, 209, 410
MunI	CAATTG	2 cut(s)	795, 2193
Mva1269I	GAATGC	2 cut(s)	1678, 1837
MvaI	CCWGG	3 cut(s)	131, 209, 410
MvnI	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
MwoI	GCNNNNNNNGC	7 cut(s)	346, 384, 610, 1139, 1673, 1772, 2198
NcoI	CCATGG	1 cut(s)	1796
NdeII	GATC	8 cut(s)	13, 27, 133, 499, 680, 1098, 1120, 1500
NlaIV	GGNNCC	7 cut(s)	15, 40, 85, 575, 1008, 1122, 1384
NmeAIII	GCCGAG	4 cut(s)	70, 1161, 2020, 2170
NmuCI	GTSAC	2 cut(s)	1702, 1848
NspI	RCATGY	1 cut(s)	1268
OliI	CACNNNNGTG	1 cut(s)	77
PaqCI	CACCTGC	1 cut(s)	275
PceI	AGGCCT	1 cut(s)	1959
PcsI	WCGNNNNNNNCGW	4 cut(s)	42, 228, 240, 282
PctI	GAATGC	2 cut(s)	1678, 1837
PdmI	GAANNNNTTC	2 cut(s)	1460, 1587
PfeI	GAWTC	5 cut(s)	473, 530, 881, 1874, 2089
PflFI	GACNNNGTC	3 cut(s)	221, 242, 284
PkrI	GCNGC	7 cut(s)	427, 525, 559, 741, 1837, 1845, 2200
PleI	GAGTC	5 cut(s)	13, 427, 466, 520, 2005
PpsI	GAGTC	5 cut(s)	13, 427, 466, 520, 2005
Ppu21I	YACGTR	1 cut(s)	1712
PpuMI	RGGWCCY	2 cut(s)	211, 2117
Psp124BI	GAGCTC	1 cut(s)	309
Psp5II	RGGWCCY	2 cut(s)	211, 2117
Psp6I	CCWGG	3 cut(s)	129, 207, 408
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	3 cut(s)	129, 207, 408
PspN4I	GGNNCC	7 cut(s)	15, 40, 85, 575, 1008, 1122, 1384
PspPI	GGNCC	8 cut(s)	211, 298, 369, 565, 574, 1007, 2117, 2200
PspPPI	RGGWCCY	2 cut(s)	211, 2117
PstI	CTGCAG	3 cut(s)	559, 1320, 1848
PstNI	CAGNNNCTG	2 cut(s)	488, 1766
PsuI	RGATCY	3 cut(s)	13, 133, 1120
PsyI	GACNNNGTC	3 cut(s)	221, 242, 284
RsaI	GTAC	2 cut(s)	911, 1409
RsaNI	GTAC	2 cut(s)	910, 1408
RseI	CAYNNNNRTG	4 cut(s)	77, 582, 1289, 2051
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	5 cut(s)	390, 747, 1617, 1788, 2181
SatI	GCNGC	7 cut(s)	426, 524, 558, 740, 1836, 1844, 2199
Sau3AI	GATC	8 cut(s)	13, 27, 133, 499, 680, 1098, 1120, 1500
Sau96I	GGNCC	8 cut(s)	211, 298, 369, 565, 574, 1007, 2117, 2200
SchI	GAGTC	5 cut(s)	14, 428, 467, 521, 2005
ScrFI	CCNGG	3 cut(s)	131, 209, 410
SduI	GDGCHC	4 cut(s)	309, 828, 1443, 1548
SfaNI	GCATC	2 cut(s)	1047, 1920
SfcI	CTRYAG	4 cut(s)	555, 638, 1316, 1844
SinI	GGWCC	6 cut(s)	211, 298, 369, 565, 574, 2117
SmiMI	CAYNNNNRTG	4 cut(s)	77, 582, 1289, 2051
SmlI	CTYRAG	3 cut(s)	658, 1108, 2204
SmoI	CTYRAG	3 cut(s)	658, 1108, 2204
SseBI	AGGCCT	1 cut(s)	1959
SsiI	CCGC	5 cut(s)	42, 301, 425, 1775, 2198
SspMI	CTAG	1 cut(s)	2004
SstI	GAGCTC	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	1959
StyD4I	CCNGG	3 cut(s)	129, 207, 408
StyI	CCWWGG	2 cut(s)	294, 1796
TaaI	ACNGT	6 cut(s)	24, 1050, 1277, 1510, 1702, 2023
TaiI	ACGT	5 cut(s)	81, 246, 258, 288, 1714
TatI	WGTACW	1 cut(s)	909
TauI	GCSGC	2 cut(s)	428, 2201
TfiI	GAWTC	5 cut(s)	473, 530, 881, 1874, 2089
Tru1I	TTAA	5 cut(s)	390, 747, 1617, 1788, 2181
Tru9I	TTAA	5 cut(s)	390, 747, 1617, 1788, 2181
TscAI	CASTG	2 cut(s)	1368, 1728
TseFI	GTSAC	2 cut(s)	1702, 1848
TseI	GCWGC	5 cut(s)	523, 557, 739, 1835, 1843
Tsp45I	GTSAC	2 cut(s)	1702, 1848
TspDTI	ATGAA	6 cut(s)	586, 980, 1075, 1428, 1805, 1870
TspGWI	ACGGA	2 cut(s)	53, 1706
TspRI	CASTG	2 cut(s)	1368, 1728
Tth111I	GACNNNGTC	3 cut(s)	221, 242, 284
VpaK11BI	GGWCC	6 cut(s)	211, 298, 369, 565, 574, 2117
XapI	RAATTY	5 cut(s)	692, 967, 1082, 1898, 2110
XceI	RCATGY	1 cut(s)	1268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1291
XmiI	GTMKAC	1 cut(s)	637
XmnI	GAANNNNTTC	2 cut(s)	1460, 1587
XspI	CTAG	1 cut(s)	2004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.