Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012136.1

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Forward (+)

72808 .. 73782

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012136.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggcaacttcggcggcccatttatccatgacgcgcctcctccacgagtgcataacctaccaacgcgccctggatctcaacctcgaccacctcctctcccagcgctcctacctcgacaagcacctctccaatctccagaaatcctcccaggtcctcgacatcgtcaagtccgacaccgaccacgtcccctccacctgcgacctcattgaccacgtcaacactaaggtccgcaagctcgacctcgcccagtcaaacgtcaactccatgctcctccatttggacgtgattacgtcggaatctgatcaccagtccggtagccggattccattgaccggtcgcgggattccggtcatcgattgtcggagtcgggtcaccgaaccaccaccggagtcaagcaaggtctccaatgacttctttccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

140

Amino Acids

15.63

Weight (kDa)

6.21

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	203
Acc36I	ACCTGC	1 cut(s)	203
AccII	CGCG	3 cut(s)	34, 66, 339
AciI	CCGC	3 cut(s)	14, 229, 339
AclWI	GGATC	1 cut(s)	81
AfeI	AGCGCT	1 cut(s)	104
AfiI	CCNNNNNNNGG	4 cut(s)	277, 318, 332, 339
AgeI	ACCGGT	1 cut(s)	332
AjiI	CACGTC	3 cut(s)	184, 214, 283
AjnI	CCWGG	2 cut(s)	69, 147
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Alw26I	GTCTC	1 cut(s)	406
AlwI	GGATC	1 cut(s)	81
Aor51HI	AGCGCT	1 cut(s)	104
AoxI	GGCC	1 cut(s)	15
AsiGI	ACCGGT	1 cut(s)	332
AspLEI	GCGC	3 cut(s)	36, 68, 105
AspS9I	GGNCC	3 cut(s)	16, 151, 226
AsuHPI	GGTGA	2 cut(s)	296, 364
AvaII	GGWCC	2 cut(s)	151, 226
BauI	CACGAG	1 cut(s)	44
BciT130I	CCWGG	2 cut(s)	71, 149
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	406
BfoI	RGCGCY	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	203
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	71, 149
Bme18I	GGWCC	2 cut(s)	151, 226
BmgBI	CACGTC	3 cut(s)	184, 214, 283
BmgT120I	GGNCC	3 cut(s)	16, 151, 226
BmrFI	CCNGG	2 cut(s)	71, 149
BmrI	ACTGGG	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	119
Bsa29I	ATCGAT	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	406
BsaJI	CCNNGG	2 cut(s)	69, 147
BsaWI	WCCGGW	4 cut(s)	311, 332, 346, 385
BsaXI	ACNNNNNCTCC	6 cut(s)	80, 110, 173, 203, 245, 275
Bsc4I	CCNNNNNNNGG	4 cut(s)	277, 318, 332, 339
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	247, 307
BseBI	CCWGG	2 cut(s)	71, 149
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	69, 147
BseLI	CCNNNNNNNGG	4 cut(s)	277, 318, 332, 339
BseNI	ACTGG	2 cut(s)	247, 307
BseRI	GAGGAG	3 cut(s)	29, 83, 260
BseYI	CCCAGC	1 cut(s)	99
Bsh1236I	CGCG	3 cut(s)	34, 66, 339
Bsh1285I	CGRYCG	1 cut(s)	337
BshFI	GGCC	1 cut(s)	17
BshTI	ACCGGT	1 cut(s)	332
BshVI	ATCGAT	1 cut(s)	354
BsiEI	CGRYCG	1 cut(s)	337
BsiSI	CCGG	5 cut(s)	312, 319, 333, 347, 386
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	4 cut(s)	277, 318, 332, 339
BsmAI	GTCTC	1 cut(s)	406
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	17
Bso31I	GGTCTC	1 cut(s)	406
Bsp143I	GATC	2 cut(s)	73, 301
BspACI	CCGC	3 cut(s)	14, 229, 339
BspANI	GGCC	1 cut(s)	17
BspDI	ATCGAT	1 cut(s)	354
BspFNI	CGCG	3 cut(s)	34, 66, 339
BspMI	ACCTGC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	406
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	247, 307
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	2 cut(s)	69, 147
BssMI	GATC	2 cut(s)	73, 301
BssSI	CACGAG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	2 cut(s)	71, 149
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	222
BstEII	GGTNACC	1 cut(s)	370
BstFNI	CGCG	3 cut(s)	34, 66, 339
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	3 cut(s)	36, 68, 105
BstKTI	GATC	2 cut(s)	76, 304
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	2 cut(s)	73, 301
BstMCI	CGRYCG	1 cut(s)	337
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	71, 149
BstPI	GGTNACC	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	69, 147
BstUI	CGCG	3 cut(s)	34, 66, 339
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
Bsu15I	ATCGAT	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	17
BsuTUI	ATCGAT	1 cut(s)	354
BtrI	CACGTC	3 cut(s)	184, 214, 283
BveI	ACCTGC	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	233
CfoI	GCGC	3 cut(s)	36, 68, 105
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	3 cut(s)	16, 151, 226
ClaI	ATCGAT	1 cut(s)	354
CseI	GACGC	1 cut(s)	40
CspAI	ACCGGT	1 cut(s)	332
CviAII	CATG	2 cut(s)	28, 265
CviJI	RGCY	3 cut(s)	17, 235, 318
CviKI_1	RGCY	3 cut(s)	17, 235, 318
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	2 cut(s)	75, 303
DpnII	GATC	2 cut(s)	73, 301
Eco31I	GGTCTC	1 cut(s)	406
Eco47I	GGWCC	2 cut(s)	151, 226
Eco47III	AGCGCT	1 cut(s)	104
Eco91I	GGTNACC	1 cut(s)	370
EcoO109I	RGGNCCY	1 cut(s)	151
EcoO65I	GGTNACC	1 cut(s)	370
EcoRII	CCWGG	2 cut(s)	69, 147
FaeI	CATG	2 cut(s)	31, 268
FaiI	YATR	3 cut(s)	29, 53, 266
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	2 cut(s)	27, 264
FauI	CCCGC	1 cut(s)	332
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	15
GlaI	GCGC	3 cut(s)	35, 67, 104
GluI	GCNGC	1 cut(s)	15
GsaI	CCCAGC	1 cut(s)	103
GsuI	CTGGAG	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	5 cut(s)	312, 319, 333, 347, 386
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	3 cut(s)	36, 68, 105
Hin1II	CATG	2 cut(s)	31, 268
Hin6I	GCGC	3 cut(s)	34, 66, 103
HinP1I	GCGC	3 cut(s)	34, 66, 103
HincII	GTYRAC	2 cut(s)	217, 259
HindII	GTYRAC	2 cut(s)	217, 259
HinfI	GANTC	5 cut(s)	296, 322, 343, 364, 389
HpaII	CCGG	5 cut(s)	312, 319, 333, 347, 386
HphI	GGTGA	2 cut(s)	296, 364
Hpy166II	GTNNAC	2 cut(s)	217, 259
Hpy188I	TCNGA	4 cut(s)	172, 295, 301, 363
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	2 cut(s)	217, 259
Hpy99I	CGWCG	1 cut(s)	295
HpyCH4IV	ACGT	5 cut(s)	183, 213, 255, 282, 290
HpyCH4V	TGCA	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	5 cut(s)	183, 213, 255, 282, 290
Hsp92II	CATG	2 cut(s)	31, 268
HspAI	GCGC	3 cut(s)	34, 66, 103
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	73, 301
LmnI	GCTCC	2 cut(s)	110, 273
MaeII	ACGT	5 cut(s)	183, 213, 255, 282, 290
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	2 cut(s)	75, 303
MboI	GATC	2 cut(s)	73, 301
MflI	RGATCY	1 cut(s)	73
MlyI	GAGTC	2 cut(s)	373, 398
MmeI	TCCRAC	3 cut(s)	195, 273, 341
MspI	CCGG	5 cut(s)	312, 319, 333, 347, 386
MspR9I	CCNGG	2 cut(s)	71, 149
MvaI	CCWGG	2 cut(s)	71, 149
MvnI	CGCG	3 cut(s)	34, 66, 339
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	73, 301
NlaIII	CATG	2 cut(s)	31, 268
NmuCI	GTSAC	1 cut(s)	370
PaqCI	CACCTGC	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	3 cut(s)	296, 322, 343
PflFI	GACNNNGTC	3 cut(s)	161, 182, 212
PinAI	ACCGGT	1 cut(s)	332
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	2 cut(s)	372, 397
PpsI	GAGTC	2 cut(s)	372, 397
PpuMI	RGGWCCY	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	69, 147
PspEI	GGTNACC	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	2 cut(s)	69, 147
PspPI	GGNCC	3 cut(s)	16, 151, 226
PspPPI	RGGWCCY	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	73
PsyI	GACNNNGTC	3 cut(s)	161, 182, 212
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	73, 301
Sau96I	GGNCC	3 cut(s)	16, 151, 226
SchI	GAGTC	2 cut(s)	373, 398
ScrFI	CCNGG	2 cut(s)	71, 149
SinI	GGWCC	2 cut(s)	151, 226
SsiI	CCGC	3 cut(s)	14, 229, 339
StyD4I	CCNGG	2 cut(s)	69, 147
TaiI	ACGT	5 cut(s)	186, 216, 258, 285, 293
TaqI	TCGA	5 cut(s)	84, 114, 156, 237, 354
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	3 cut(s)	296, 322, 343
TseFI	GTSAC	1 cut(s)	370
Tsp45I	GTSAC	1 cut(s)	370
Tth111I	GACNNNGTC	3 cut(s)	161, 182, 212
VpaK11BI	GGWCC	2 cut(s)	151, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.