Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Reverse (-)

20827561 .. 20829076

Gene Structure 1516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29942.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCCCTTCTCCGTGGATTTTGTTTACCTCCTCTCCCAGCGCTCCGACCTCGACAAGCACCTCTCCAGCCTCCAGAATTCCTCCCAGGTCCTCGAGATCGTCAAGTCCGACGCCGATCACGTCCTCTCCAACGTCGCCTCCACCTGCGACCTCGCCGACCACGTCAGCGCCAAGATTGAATCTGAGTATCACGATTCGGGATCGGAGCAGAGGGACCAGCTCATGGAGTCGAAGAAGCTTCTGGAATCGATTGTGAAGAAGAAGCTCAGCGCCGCCGTGGACCAGAGAGACCATATGAATGTGTTGAGGTTCATTAGGCTGTACACGCCGTTAGGGATAGAGGAGGAGGGTTTGCAGGCTTATGTGAGCTACTTGAGGAAGGTGATTGGGATGAGATCGCGGCTGGAATTCGAGTATTTGATGGAGCTGATGGAGCAGAAAAGCAATCAGAGCCAGCAGGTCAACTTCGTGGGGTGTTTGACCAATTTGTTTAAGGACATTGTGCTTACTGGGTGTCAGGGAAAATCCGGTGACCGGAATCCGGCGGTCGGGGAAATTCTGGTGACCGGAATCCGGCAGTCGGTGACCGGAGTCCCGCGGCCGGTGACCAGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

206

Amino Acids

23.05

Weight (kDa)

5.97

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG4_m	PF08318	103 - 168	9.1e-12	COG4 transport protein, middle alpha-helical bundle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	152
Acc36I	ACCTGC	2 cut(s)	152, 448
AccB7I	CCANNNNNTGG	1 cut(s)	223
AccII	CGCG	2 cut(s)	400, 598
AciI	CCGC	5 cut(s)	273, 400, 545, 596, 598
AclWI	GGATC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	599
AcsI	RAATTY	3 cut(s)	76, 407, 555
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	323
AfeI	AGCGCT	1 cut(s)	41
AfiI	CCNNNNNNNGG	7 cut(s)	223, 534, 541, 548, 573, 580, 601
AgsI	TTSAA	1 cut(s)	179
AjiI	CACGTC	2 cut(s)	121, 163
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	5 cut(s)	220, 238, 265, 369, 427
AluI	AGCT	5 cut(s)	220, 238, 265, 369, 427
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	208
AlwNI	CAGNNNCTG	1 cut(s)	615
Ama87I	CYCGRG	1 cut(s)	92
Aor51HI	AGCGCT	1 cut(s)	41
AoxI	GGCC	1 cut(s)	599
ApoI	RAATTY	3 cut(s)	76, 407, 555
AspLEI	GCGC	3 cut(s)	42, 170, 272
AspS9I	GGNCC	3 cut(s)	88, 214, 280
AsuHPI	GGTGA	5 cut(s)	394, 542, 574, 595, 616
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	3 cut(s)	88, 214, 280
BccI	CCATC	2 cut(s)	415, 424
BceAI	ACGGC	2 cut(s)	260, 313
BciT130I	CCWGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	282
BfoI	RGCGCY	3 cut(s)	43, 171, 273
BfuAI	ACCTGC	2 cut(s)	152, 448
BisI	GCNGC	3 cut(s)	273, 401, 599
BlpI	GCTNAGC	1 cut(s)	266
BlsI	GCNGC	3 cut(s)	274, 402, 600
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	3 cut(s)	88, 214, 280
BmeT110I	CYCGRG	1 cut(s)	92
BmgBI	CACGTC	2 cut(s)	121, 163
BmgT120I	GGNCC	3 cut(s)	88, 214, 280
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	86
BmrI	ACTGGG	1 cut(s)	519
BmuI	ACTGGG	1 cut(s)	519
BoxI	GACNNNNGTC	2 cut(s)	590, 611
BpmI	CTGGAG	2 cut(s)	49, 56
Bpu1102I	GCTNAGC	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	394
Bsa29I	ATCGAT	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	282
BsaJI	CCNNGG	4 cut(s)	12, 84, 276, 596
BsaWI	WCCGGW	4 cut(s)	527, 534, 566, 587
BsaXI	ACNNNNNCTCC	6 cut(s)	17, 47, 110, 122, 140, 152
Bsc4I	CCNNNNNNNGG	7 cut(s)	223, 534, 541, 548, 573, 580, 601
Bse118I	RCCGGY	1 cut(s)	601
Bse1I	ACTGG	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	86
BseCI	ATCGAT	1 cut(s)	248
BseDI	CCNNGG	4 cut(s)	12, 84, 276, 596
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	7 cut(s)	223, 534, 541, 548, 573, 580, 601
BseMII	CTCAG	2 cut(s)	174, 280
BseNI	ACTGG	1 cut(s)	514
BseRI	GAGGAG	3 cut(s)	20, 356, 359
BseX3I	CGGCCG	1 cut(s)	599
BseYI	CCCAGC	1 cut(s)	36
Bsh1236I	CGCG	2 cut(s)	400, 598
Bsh1285I	CGRYCG	2 cut(s)	549, 602
BshFI	GGCC	1 cut(s)	601
BshVI	ATCGAT	1 cut(s)	248
BsiEI	CGRYCG	2 cut(s)	549, 602
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	7 cut(s)	528, 535, 542, 567, 574, 588, 602
BslFI	GGGAC	2 cut(s)	227, 578
BslI	CCNNNNNNNGG	7 cut(s)	223, 534, 541, 548, 573, 580, 601
BsmAI	GTCTC	1 cut(s)	282
BsmFI	GGGAC	2 cut(s)	227, 578
BsnI	GGCC	1 cut(s)	601
Bso31I	GGTCTC	1 cut(s)	282
BsoBI	CYCGRG	1 cut(s)	92
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	4 cut(s)	96, 115, 200, 395
Bsp1720I	GCTNAGC	1 cut(s)	266
BspACI	CCGC	5 cut(s)	273, 400, 545, 596, 598
BspANI	GGCC	1 cut(s)	601
BspCNI	CTCAG	2 cut(s)	175, 279
BspDI	ATCGAT	1 cut(s)	248
BspFNI	CGCG	2 cut(s)	400, 598
BspLI	GGNNCC	1 cut(s)	215
BspMI	ACCTGC	2 cut(s)	152, 448
BspPI	GGATC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	601
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	514
BssAI	RCCGGY	1 cut(s)	601
BssECI	CCNNGG	4 cut(s)	12, 84, 276, 596
BssMI	GATC	4 cut(s)	96, 115, 200, 395
BssNI	GRCGYC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	86
BstACI	GRCGYC	1 cut(s)	111
BstAUI	TGTACA	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	357, 455
BstDEI	CTNAG	2 cut(s)	183, 266
BstDSI	CCRYGG	3 cut(s)	12, 276, 596
BstEII	GGTNACC	4 cut(s)	530, 562, 583, 604
BstF5I	GGATG	1 cut(s)	396
BstFNI	CGCG	2 cut(s)	400, 598
BstH2I	RGCGCY	3 cut(s)	43, 171, 273
BstHHI	GCGC	3 cut(s)	42, 170, 272
BstKTI	GATC	4 cut(s)	99, 118, 203, 398
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	4 cut(s)	96, 115, 200, 395
BstMCI	CGRYCG	2 cut(s)	549, 602
BstMWI	GCNNNNNNNGC	3 cut(s)	325, 433, 450
BstNI	CCWGG	1 cut(s)	86
BstPAI	GACNNNNGTC	2 cut(s)	590, 611
BstPI	GGTNACC	4 cut(s)	530, 562, 583, 604
BstSCI	CCNGG	1 cut(s)	84
BstUI	CGCG	2 cut(s)	400, 598
BstZI	CGGCCG	1 cut(s)	599
Bsu15I	ATCGAT	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	601
BsuTUI	ATCGAT	1 cut(s)	248
BtgI	CCRYGG	3 cut(s)	12, 276, 596
BtrI	CACGTC	2 cut(s)	121, 163
BtsCI	GGATG	1 cut(s)	396
BveI	ACCTGC	2 cut(s)	152, 448
Cac8I	GCNNGC	2 cut(s)	357, 455
CaiI	CAGNNNCTG	1 cut(s)	615
CfoI	GCGC	3 cut(s)	42, 170, 272
Cfr10I	RCCGGY	1 cut(s)	601
Cfr13I	GGNCC	3 cut(s)	88, 214, 280
Cfr42I	CCGCGG	1 cut(s)	599
ClaI	ATCGAT	1 cut(s)	248
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	1 cut(s)	223
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	2 cut(s)	183, 266
DpnI	GATC	4 cut(s)	98, 117, 202, 397
DpnII	GATC	4 cut(s)	96, 115, 200, 395
EaeI	YGGCCR	1 cut(s)	599
EagI	CGGCCG	1 cut(s)	599
EclXI	CGGCCG	1 cut(s)	599
Eco31I	GGTCTC	1 cut(s)	282
Eco47I	GGWCC	3 cut(s)	88, 214, 280
Eco47III	AGCGCT	1 cut(s)	41
Eco52I	CGGCCG	1 cut(s)	599
Eco88I	CYCGRG	1 cut(s)	92
Eco91I	GGTNACC	4 cut(s)	530, 562, 583, 604
EcoO109I	RGGNCCY	1 cut(s)	88
EcoO65I	GGTNACC	4 cut(s)	530, 562, 583, 604
EcoRI	GAATTC	2 cut(s)	76, 407
EcoRII	CCWGG	1 cut(s)	84
FaeI	CATG	1 cut(s)	226
FaiI	YATR	4 cut(s)	224, 294, 296, 363
FaqI	GGGAC	2 cut(s)	227, 578
FatI	CATG	1 cut(s)	222
FauI	CCCGC	1 cut(s)	603
FauNDI	CATATG	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	273, 401, 599
FokI	GGATG	1 cut(s)	403
Fsp4HI	GCNGC	3 cut(s)	273, 401, 599
GlaI	GCGC	3 cut(s)	41, 169, 271
GluI	GCNGC	3 cut(s)	273, 401, 599
GsaI	CCCAGC	1 cut(s)	40
GsuI	CTGGAG	2 cut(s)	49, 56
HaeII	RGCGCY	3 cut(s)	43, 171, 273
HaeIII	GGCC	1 cut(s)	601
HapII	CCGG	7 cut(s)	528, 535, 542, 567, 574, 588, 602
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	3 cut(s)	42, 170, 272
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	226
Hin6I	GCGC	3 cut(s)	40, 168, 270
HinP1I	GCGC	3 cut(s)	40, 168, 270
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	8 cut(s)	179, 194, 227, 245, 538, 570, 591, 612
HpaII	CCGG	7 cut(s)	528, 535, 542, 567, 574, 588, 602
HphI	GGTGA	5 cut(s)	394, 542, 574, 595, 616
Hpy166II	GTNNAC	4 cut(s)	25, 280, 324, 463
Hpy188I	TCNGA	6 cut(s)	46, 109, 184, 205, 450, 617
Hpy188III	TCNNGA	5 cut(s)	73, 94, 191, 198, 242
Hpy8I	GTNNAC	4 cut(s)	25, 280, 324, 463
Hpy99I	CGWCG	2 cut(s)	113, 137
HpyAV	CCTTC	2 cut(s)	16, 373
HpyCH4IV	ACGT	3 cut(s)	120, 132, 162
HpyCH4V	TGCA	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	325, 433, 450
HpyF3I	CTNAG	2 cut(s)	183, 266
HpySE526I	ACGT	3 cut(s)	120, 132, 162
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	226
HspAI	GCGC	3 cut(s)	40, 168, 270
KspI	CCGCGG	1 cut(s)	599
Kzo9I	GATC	4 cut(s)	96, 115, 200, 395
LmnI	GCTCC	4 cut(s)	47, 205, 424, 433
MaeII	ACGT	3 cut(s)	120, 132, 162
MaeIII	GTNAC	4 cut(s)	530, 562, 583, 604
MalI	GATC	4 cut(s)	98, 117, 202, 397
MboI	GATC	4 cut(s)	96, 115, 200, 395
MboII	GAAGA	3 cut(s)	244, 268, 271
MluCI	AATT	4 cut(s)	76, 407, 484, 555
MlyI	GAGTC	2 cut(s)	236, 600
MmeI	TCCRAC	3 cut(s)	69, 132, 153
MseI	TTAA	1 cut(s)	492
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	598
MspI	CCGG	7 cut(s)	528, 535, 542, 567, 574, 588, 602
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	2 cut(s)	400, 598
MwoI	GCNNNNNNNGC	3 cut(s)	325, 433, 450
NdeI	CATATG	1 cut(s)	294
NdeII	GATC	4 cut(s)	96, 115, 200, 395
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	1 cut(s)	215
NmuCI	GTSAC	4 cut(s)	530, 562, 583, 604
PaeR7I	CTCGAG	1 cut(s)	92
PaqCI	CACCTGC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	3 cut(s)	105, 117, 159
PfeI	GAWTC	5 cut(s)	179, 194, 245, 538, 570
PflFI	GACNNNGTC	1 cut(s)	161
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	3 cut(s)	274, 402, 600
PleI	GAGTC	2 cut(s)	235, 599
PpsI	GAGTC	2 cut(s)	235, 599
PpuMI	RGGWCCY	1 cut(s)	88
PshAI	GACNNNNGTC	2 cut(s)	590, 611
Psp5II	RGGWCCY	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	84
PspEI	GGTNACC	4 cut(s)	530, 562, 583, 604
PspFI	CCCAGC	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	3 cut(s)	88, 214, 280
PspPPI	RGGWCCY	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	615
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	297
SacII	CCGCGG	1 cut(s)	599
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	3 cut(s)	273, 401, 599
Sau3AI	GATC	4 cut(s)	96, 115, 200, 395
Sau96I	GGNCC	3 cut(s)	88, 214, 280
SchI	GAGTC	2 cut(s)	236, 600
ScrFI	CCNGG	1 cut(s)	86
Sfr274I	CTCGAG	1 cut(s)	92
Sfr303I	CCGCGG	1 cut(s)	599
SgrBI	CCGCGG	1 cut(s)	599
SinI	GGWCC	3 cut(s)	88, 214, 280
SlaI	CTCGAG	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	92, 373
SmoI	CTYRAG	2 cut(s)	92, 373
Sse9I	AATT	4 cut(s)	76, 407, 484, 555
SsiI	CCGC	5 cut(s)	273, 400, 545, 596, 598
StyD4I	CCNGG	1 cut(s)	84
TaiI	ACGT	3 cut(s)	123, 135, 165
TaqI	TCGA	5 cut(s)	51, 93, 230, 248, 411
TasI	AATT	4 cut(s)	76, 407, 484, 555
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	3 cut(s)	275, 403, 601
TfiI	GAWTC	5 cut(s)	179, 194, 245, 538, 570
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TseFI	GTSAC	4 cut(s)	530, 562, 583, 604
Tsp45I	GTSAC	4 cut(s)	530, 562, 583, 604
TspDTI	ATGAA	2 cut(s)	301, 311
Tth111I	GACNNNGTC	1 cut(s)	161
Van91I	CCANNNNNTGG	1 cut(s)	223
VpaK11BI	GGWCC	3 cut(s)	88, 214, 280
XapI	RAATTY	3 cut(s)	76, 407, 555
XhoI	CTCGAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.