Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003541.1

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Forward (+)

99331 .. 100147

Gene Structure 817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003541.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgatgcgcctcctccacgagtgcatagcctaccaacacgccctggatctcaacctcgaccatctcctctcccagcgcttcgacctcgacaagcacatctccaatctccagaaatcctcccaggtccttgacatcgtcaagtccaacgccgaccatgtcctctccaacgtctcctccacctgcgacctctccgaccacgtcagcgccaaggtccgcaagctcgacctcgcccagtcacgcgtcaactcagggaaggtcaaagctccacgtcggaattgggtctgggcttcgctggcagggctcggactacgtcactttgttggacggcgtgggggcaataaattcagacgcgggaatccggacaccagtccggtagttggattcctgattccggtgaccggtggcccgattccgatcaccggagtccggcaaggtggaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

147

Amino Acids

16.11

Weight (kDa)

10.28

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	188
Acc36I	ACCTGC	1 cut(s)	188
AccII	CGCG	2 cut(s)	240, 351
AccIII	TCCGGA	1 cut(s)	358
AciI	CCGC	2 cut(s)	214, 351
AclWI	GGATC	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	341
AfeI	AGCGCT	1 cut(s)	77
AfiI	CCNNNNNNNGG	5 cut(s)	377, 391, 398, 419, 426
AflIII	ACRYGT	1 cut(s)	238
AgeI	ACCGGT	1 cut(s)	398
AjiI	CACGTC	2 cut(s)	199, 269
AjnI	CCWGG	2 cut(s)	42, 120
AluBI	AGCT	2 cut(s)	220, 263
AluI	AGCT	2 cut(s)	220, 263
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	54
Aor13HI	TCCGGA	1 cut(s)	358
Aor51HI	AGCGCT	1 cut(s)	77
AoxI	GGCC	1 cut(s)	403
ApoI	RAATTY	1 cut(s)	341
AsiGI	ACCGGT	1 cut(s)	398
AspLEI	GCGC	3 cut(s)	9, 78, 206
AspS9I	GGNCC	3 cut(s)	124, 211, 404
AsuHPI	GGTGA	2 cut(s)	406, 409
AvaII	GGWCC	2 cut(s)	124, 211
BanII	GRGCYC	1 cut(s)	303
BauI	CACGAG	1 cut(s)	17
BccI	CCATC	1 cut(s)	69
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	2 cut(s)	44, 122
BcoDI	GTCTC	1 cut(s)	175
BfoI	RGCGCY	2 cut(s)	79, 207
BfuAI	ACCTGC	1 cut(s)	188
Bme1390I	CCNGG	2 cut(s)	44, 122
Bme18I	GGWCC	2 cut(s)	124, 211
BmgBI	CACGTC	2 cut(s)	199, 269
BmgT120I	GGNCC	3 cut(s)	124, 211, 404
BmrFI	CCNGG	2 cut(s)	44, 122
BmrI	ACTGGG	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	226
BoxI	GACNNNNGTC	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	413
BsaJI	CCNNGG	3 cut(s)	42, 120, 207
BsaWI	WCCGGW	5 cut(s)	358, 370, 391, 398, 419
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	5 cut(s)	377, 391, 398, 419, 426
Bse118I	RCCGGY	1 cut(s)	398
Bse1I	ACTGG	2 cut(s)	232, 366
Bse8I	GATNNNNATC	1 cut(s)	413
BseAI	TCCGGA	1 cut(s)	358
BseBI	CCWGG	2 cut(s)	44, 122
BseDI	CCNNGG	3 cut(s)	42, 120, 207
BseJI	GATNNNNATC	1 cut(s)	413
BseLI	CCNNNNNNNGG	5 cut(s)	377, 391, 398, 419, 426
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	2 cut(s)	232, 366
BseRI	GAGGAG	2 cut(s)	56, 163
BseYI	CCCAGC	1 cut(s)	72
Bsh1236I	CGCG	2 cut(s)	240, 351
BshFI	GGCC	1 cut(s)	405
BshTI	ACCGGT	1 cut(s)	398
BsiSI	CCGG	6 cut(s)	359, 371, 392, 399, 420, 427
BslI	CCNNNNNNNGG	5 cut(s)	377, 391, 398, 419, 426
BsmAI	GTCTC	1 cut(s)	175
BsmBI	CGTCTC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp13I	TCCGGA	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	46, 414
BspACI	CCGC	2 cut(s)	214, 351
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	1 cut(s)	260
BspEI	TCCGGA	1 cut(s)	358
BspFNI	CGCG	2 cut(s)	240, 351
BspMI	ACCTGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	398
BsrI	ACTGG	2 cut(s)	232, 366
BssAI	RCCGGY	1 cut(s)	398
BssECI	CCNNGG	3 cut(s)	42, 120, 207
BssMI	GATC	2 cut(s)	46, 414
BssSI	CACGAG	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	207
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	2 cut(s)	44, 122
BstC8I	GCNNGC	2 cut(s)	218, 294
BstDEI	CTNAG	1 cut(s)	247
BstEII	GGTNACC	1 cut(s)	394
BstFNI	CGCG	2 cut(s)	240, 351
BstH2I	RGCGCY	2 cut(s)	79, 207
BstHHI	GCGC	3 cut(s)	9, 78, 206
BstKTI	GATC	2 cut(s)	49, 417
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	2 cut(s)	46, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 298
BstNI	CCWGG	2 cut(s)	44, 122
BstPAI	GACNNNNGTC	1 cut(s)	366
BstPI	GGTNACC	1 cut(s)	394
BstSCI	CCNGG	2 cut(s)	42, 120
BstUI	CGCG	2 cut(s)	240, 351
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	405
BtrI	CACGTC	2 cut(s)	199, 269
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	2 cut(s)	218, 294
CfoI	GCGC	3 cut(s)	9, 78, 206
Cfr10I	RCCGGY	1 cut(s)	398
Cfr13I	GGNCC	3 cut(s)	124, 211, 404
CseI	GACGC	2 cut(s)	229, 357
CspAI	ACCGGT	1 cut(s)	398
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	6 cut(s)	29, 220, 263, 287, 301, 405
CviKI_1	RGCY	6 cut(s)	29, 220, 263, 287, 301, 405
DdeI	CTNAG	1 cut(s)	247
DpnI	GATC	2 cut(s)	48, 416
DpnII	GATC	2 cut(s)	46, 414
Eco130I	CCWWGG	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	124, 211
Eco47III	AGCGCT	1 cut(s)	77
Eco91I	GGTNACC	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	124
EcoO65I	GGTNACC	1 cut(s)	394
EcoRII	CCWGG	2 cut(s)	42, 120
EcoT14I	CCWWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	1 cut(s)	158
FaiI	YATR	2 cut(s)	26, 156
FatI	CATG	1 cut(s)	154
FauI	CCCGC	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	303
GlaI	GCGC	3 cut(s)	8, 77, 205
GsaI	CCCAGC	1 cut(s)	76
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	2 cut(s)	79, 207
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	6 cut(s)	359, 371, 392, 399, 420, 427
HgaI	GACGC	2 cut(s)	229, 357
HhaI	GCGC	3 cut(s)	9, 78, 206
Hin1II	CATG	1 cut(s)	158
Hin6I	GCGC	3 cut(s)	7, 76, 204
HinP1I	GCGC	3 cut(s)	7, 76, 204
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	5 cut(s)	355, 381, 388, 409, 423
HpaII	CCGG	6 cut(s)	359, 371, 392, 399, 420, 427
HphI	GGTGA	2 cut(s)	406, 409
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	5 cut(s)	193, 273, 305, 347, 414
Hpy188III	TCNNGA	3 cut(s)	109, 359, 385
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	1 cut(s)	273
HpyAV	CCTTC	1 cut(s)	247
HpyCH4IV	ACGT	4 cut(s)	168, 198, 268, 310
HpyCH4V	TGCA	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 298
HpyF3I	CTNAG	1 cut(s)	247
HpySE526I	ACGT	4 cut(s)	168, 198, 268, 310
Hsp92II	CATG	1 cut(s)	158
HspAI	GCGC	3 cut(s)	7, 76, 204
Kpn2I	TCCGGA	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	46, 414
LmnI	GCTCC	1 cut(s)	268
MaeII	ACGT	4 cut(s)	168, 198, 268, 310
MaeIII	GTNAC	3 cut(s)	234, 311, 394
MalI	GATC	2 cut(s)	48, 416
MboI	GATC	2 cut(s)	46, 414
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	2 cut(s)	274, 341
MluI	ACGCGT	1 cut(s)	238
MlyI	GAGTC	1 cut(s)	432
MmeI	TCCRAC	6 cut(s)	168, 189, 216, 251, 301, 358
MroI	TCCGGA	1 cut(s)	358
MspI	CCGG	6 cut(s)	359, 371, 392, 399, 420, 427
MspR9I	CCNGG	2 cut(s)	44, 122
MvaI	CCWGG	2 cut(s)	44, 122
MvnI	CGCG	2 cut(s)	240, 351
MwoI	GCNNNNNNNGC	2 cut(s)	293, 298
NdeII	GATC	2 cut(s)	46, 414
NlaIII	CATG	1 cut(s)	158
NmuCI	GTSAC	3 cut(s)	234, 311, 394
PaqCI	CACCTGC	1 cut(s)	188
PfeI	GAWTC	4 cut(s)	355, 381, 388, 409
PflFI	GACNNNGTC	4 cut(s)	134, 155, 197, 309
PinAI	ACCGGT	1 cut(s)	398
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
PpuMI	RGGWCCY	1 cut(s)	124
PshAI	GACNNNNGTC	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	42, 120
PspEI	GGTNACC	1 cut(s)	394
PspFI	CCCAGC	1 cut(s)	72
PspGI	CCWGG	2 cut(s)	42, 120
PspPI	GGNCC	3 cut(s)	124, 211, 404
PspPPI	RGGWCCY	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	46
PsyI	GACNNNGTC	4 cut(s)	134, 155, 197, 309
Sau3AI	GATC	2 cut(s)	46, 414
Sau96I	GGNCC	3 cut(s)	124, 211, 404
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	2 cut(s)	44, 122
SduI	GDGCHC	1 cut(s)	303
SinI	GGWCC	2 cut(s)	124, 211
Sse9I	AATT	2 cut(s)	274, 341
SsiI	CCGC	2 cut(s)	214, 351
StyD4I	CCNGG	2 cut(s)	42, 120
StyI	CCWWGG	1 cut(s)	207
TaiI	ACGT	4 cut(s)	171, 201, 271, 313
TaqI	TCGA	4 cut(s)	57, 81, 87, 222
TasI	AATT	2 cut(s)	274, 341
TfiI	GAWTC	4 cut(s)	355, 381, 388, 409
TseFI	GTSAC	3 cut(s)	234, 311, 394
Tsp45I	GTSAC	3 cut(s)	234, 311, 394
Tth111I	GACNNNGTC	4 cut(s)	134, 155, 197, 309
VpaK11BI	GGWCC	2 cut(s)	124, 211
XapI	RAATTY	1 cut(s)	341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.