Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Reverse (-)

23352034 .. 23353710

Gene Structure 1677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1159800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1677 bp

ATGGAGTCGGATCAACCGTCCATAAAATTCGGGACCCATGAGGCCCTCTCGCACGTGCGGGCCCTGACGGACGTCGGCGCCATGACGCGCCTCCTCCACGAGTGCATCGCGTACCAGCGATCCCTAGATCTGGACCTCGACAACCTCCTCTCCCAGCGCTCCGACCTCGACAAGCAGCTCCTCGGCCTCCGCAAGTCCTCCCTGGTTCTCGACATCGTCAAGTCCGACTCCGACCACGTCCTCTCTAACGTCGCCTCCACCTGCGACCTCGCCGACCACGTCAGCGCCAAGGTCCGCGAGCTCGACCTCGCCCAGTCCCGCGTCAAGTCCACGCTCCTCCGCCTCGACGCCATCGTCGAGCGCGGCAACTGCATTGATGGCGTCAAGCAGGCCCTCGACTCCCAGGACTACGAGTCCGCAGCCAATTACGTCCAGCGCTTCCTCCAGATCGACTCCGAGTACCGAGACTCCGGCGCCGACCATCGGGAGCAGCTCATGGAGTCGAAGAGGCAGCTCGAATCCATCGTCAGGAAGAAGCTCTCGGCCGCCGTGGAGCAGAGGGAGCATTCCGATGTGTTGAGATTCATCAGGCTTTACACTCCATTAGGGTTGGAAACGGAGGGGTTGCAGGTTTACGTTGGGTACTTGCGGAAGGTGATTGGGATGCGATCCCGGCTCGAATTCGAGCACTTGGTGGAGCTAATGGAGCAGAACAATCCGACCCAGGCTGTCAATTTTGTCGGGTGTTTGACCAATTTGTTCAAGGACATTGTTTTGGCGGTGGAAGAGAACGATGAGATTTTGAGAGGGCTTTGTGGGGAAGACGGAGTTGTTTACGCCATTTGTGAGCTTCAAGAGGAATGTGATACGAGGGGTAGTTTGATCTTGAAGAAGTACATGGAGTATAGGAGATTGCCGAAGTTGAGCTCCGAGATCAATGCCCAGAACATCAATGTGGGTGGCGTTGGTGTTGGGTCCGAGGGACCCGACCCGAGAGAGGTTGAGCTGTTCTTGGAGGAGATACTGTCTTTGTTGCAATTGGGTGAGGATTACACTGAGTTCATGGTATCTAAGATCAAGGGCTTGACTAATGTCGACACGGATTTAGGTCCACGAGCCACTAGGGCTTTTAGGAGTGGAAGTTTTAGCAAGGTGGTTCAGGACATTACCGGGTTTTATGTTATATTGGAAGGTTTCTTTATGGTGGAGAATGTGAGGAAGGCTATAAGGATTGCTGAGCATGTGCCGGATAGTCTCACGACTTCAATGGTGGATGATGTTTTCTATGTTTTGCAGAGTTGCTTGCGGAGGGCGATATCCACTTTGAATATCAACTCTGTGATTGCTGTGTTGAGTGGTGCGAGTAGCTTGTTGAGCAATGAGTATCACGAGGCTTTGCAACAGAGGATGAGAGAGCCAAATCTTGGCGCAAAGCTGTTCCTAGGTGGTGTTGGTGTGCAAAAGACTGGGACGGAGATTGCCACGGTTTTGAATAATATGGATGTCAGTAGTGAGTACGTCCTCAAACTGAAGCACGAGATTGAGGAGCAATGCTTGGAGGTAATTGAAATGATTTGCTTTACTCGGTGCTGTAGTTTATCAGGATTTGTCACACGAATAATAACTACATTGTTTGGGGGAAGTCTTTGGCTTGCATTTCGCTTTGTATTAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

559

Amino Acids

62.5

Weight (kDa)

5.1

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG4_N	PF20663	63 - 154	3.7e-28	Conserved oligomeric Golgi complex subunit 4, N-terminal
COG4_m	PF08318	194 - 470	1.7e-70	COG4 transport protein, middle alpha-helical bundle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	269
AasI	GACNNNNNNGTC	1 cut(s)	353
AatII	GACGTC	1 cut(s)	75
Acc36I	ACCTGC	2 cut(s)	269, 619
AccB1I	GGYRCC	2 cut(s)	77, 473
AccB7I	CCANNNNNTGG	1 cut(s)	1424
AccI	GTMKAC	1 cut(s)	1095
AccII	CGCG	5 cut(s)	88, 110, 297, 321, 363
AclWI	GGATC	3 cut(s)	18, 114, 663
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	2 cut(s)	26, 680
AcuI	CTGAAG	1 cut(s)	1550
AcvI	CACGTG	1 cut(s)	55
AcyI	GRCGYC	5 cut(s)	72, 78, 348, 381, 474
AdeI	CACNNNGTG	1 cut(s)	694
AfaI	GTAC	5 cut(s)	113, 461, 644, 896, 1517
AfeI	AGCGCT	2 cut(s)	158, 437
AfiI	CCNNNNNNNGG	5 cut(s)	130, 483, 528, 997, 1424
AgsI	TTSAA	7 cut(s)	763, 854, 889, 1266, 1327, 1492, 1568
AhdI	GACNNNNNGTC	1 cut(s)	412
AjiI	CACGTC	2 cut(s)	238, 280
AjnI	CCWGG	3 cut(s)	201, 402, 723
Alw21I	GWGCWC	3 cut(s)	303, 690, 929
Alw26I	GTCTC	2 cut(s)	459, 1259
AlwI	GGATC	3 cut(s)	18, 114, 663
Ama87I	CYCGRG	1 cut(s)	991
Aor51HI	AGCGCT	2 cut(s)	158, 437
AoxI	GGCC	5 cut(s)	42, 60, 184, 390, 543
ApaI	GGGCCC	1 cut(s)	64
ApeKI	GCWGC	4 cut(s)	175, 419, 490, 511
ApoI	RAATTY	2 cut(s)	26, 680
ArsI	GACNNNNNNTTYG	2 cut(s)	510, 542
AspA2I	CCTAGG	1 cut(s)	1441
AspLEI	GCGC	8 cut(s)	80, 90, 159, 287, 363, 438, 476, 1430
AsuC2I	CCSGG	2 cut(s)	673, 1171
AsuHPI	GGTGA	2 cut(s)	667, 1055
AvaI	CYCGRG	1 cut(s)	991
AvaII	GGWCC	6 cut(s)	33, 133, 292, 975, 983, 1109
AvrII	CCTAGG	1 cut(s)	1441
BaeGI	GKGCMC	1 cut(s)	64
BanI	GGYRCC	2 cut(s)	77, 473
BanII	GRGCYC	3 cut(s)	64, 303, 929
BauI	CACGAG	4 cut(s)	98, 1113, 1388, 1535
BbrPI	CACGTG	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	828
Bbv12I	GWGCWC	3 cut(s)	303, 690, 929
BbvI	GCAGC	4 cut(s)	187, 431, 502, 523
BccI	CCATC	4 cut(s)	359, 371, 489, 530
BceAI	ACGGC	1 cut(s)	533
BcgI	CGANNNNNNTGC	2 cut(s)	920, 954
BciT130I	CCWGG	3 cut(s)	203, 404, 725
BcnI	CCSGG	2 cut(s)	673, 1171
BcoDI	GTCTC	2 cut(s)	459, 1259
BfaI	CTAG	3 cut(s)	125, 1122, 1442
BfmI	CTRYAG	1 cut(s)	1591
BfoI	RGCGCY	5 cut(s)	81, 160, 288, 439, 477
BfuAI	ACCTGC	2 cut(s)	269, 619
BglI	GCCNNNNNGGC	1 cut(s)	1124
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	6 cut(s)	176, 364, 420, 491, 512, 546
BlnI	CCTAGG	1 cut(s)	1441
BlpI	GCTNAGC	1 cut(s)	1236
BlsI	GCNGC	6 cut(s)	177, 365, 421, 492, 513, 547
Bme1390I	CCNGG	5 cut(s)	203, 404, 673, 725, 1171
Bme18I	GGWCC	6 cut(s)	33, 133, 292, 975, 983, 1109
BmeRI	GACNNNNNGTC	1 cut(s)	412
BmeT110I	CYCGRG	1 cut(s)	991
BmgBI	CACGTC	2 cut(s)	238, 280
BmiI	GGNNCC	8 cut(s)	34, 35, 62, 79, 475, 976, 984, 985
BmrFI	CCNGG	5 cut(s)	203, 404, 673, 725, 1171
BmrI	ACTGGG	2 cut(s)	307, 1476
BmsI	GCATC	2 cut(s)	114, 654
BmuI	ACTGGG	2 cut(s)	307, 1476
BoxI	GACNNNNGTC	2 cut(s)	71, 1091
BpiI	GAAGAC	1 cut(s)	828
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
BpmI	CTGGAG	1 cut(s)	428
Bpu1102I	GCTNAGC	1 cut(s)	1236
BpuMI	CCSGG	2 cut(s)	673, 1171
BsaAI	YACGTR	1 cut(s)	55
BsaHI	GRCGYC	5 cut(s)	72, 78, 348, 381, 474
BsaJI	CCNNGG	9 cut(s)	181, 201, 288, 402, 549, 723, 978, 1441, 1482
Bsc4I	CCNNNNNNNGG	5 cut(s)	130, 483, 528, 997, 1424
Bse1I	ACTGG	2 cut(s)	313, 1471
Bse3DI	GCAATG	2 cut(s)	1384, 1556
BseBI	CCWGG	3 cut(s)	203, 404, 725
BseDI	CCNNGG	9 cut(s)	181, 201, 288, 402, 549, 723, 978, 1441, 1482
BseGI	GGATG	4 cut(s)	669, 1279, 1413, 1507
BseLI	CCNNNNNNNGG	5 cut(s)	130, 483, 528, 997, 1424
BseMI	GCAATG	2 cut(s)	1384, 1556
BseMII	CTCAG	2 cut(s)	1047, 1227
BseNI	ACTGG	2 cut(s)	313, 1471
BseRI	GAGGAG	6 cut(s)	83, 137, 170, 326, 1031, 1559
BseSI	GKGCMC	1 cut(s)	64
BseX3I	CGGCCG	1 cut(s)	543
BseXI	GCAGC	4 cut(s)	187, 431, 502, 523
BseYI	CCCAGC	1 cut(s)	153
Bsh1236I	CGCG	5 cut(s)	88, 110, 297, 321, 363
Bsh1285I	CGRYCG	1 cut(s)	546
BshFI	GGCC	5 cut(s)	44, 62, 186, 392, 545
BshNI	GGYRCC	2 cut(s)	77, 473
BsiEI	CGRYCG	1 cut(s)	546
BsiHKAI	GWGCWC	3 cut(s)	303, 690, 929
BsiHKCI	CYCGRG	1 cut(s)	991
BsiSI	CCGG	4 cut(s)	471, 673, 1170, 1247
BslFI	GGGAC	4 cut(s)	46, 301, 996, 1483
BslI	CCNNNNNNNGG	5 cut(s)	130, 483, 528, 997, 1424
BsmAI	GTCTC	2 cut(s)	459, 1259
BsmFI	GGGAC	4 cut(s)	46, 301, 996, 1483
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	5 cut(s)	44, 62, 186, 392, 545
BsoBI	CYCGRG	1 cut(s)	991
Bsp120I	GGGCCC	1 cut(s)	60
Bsp1286I	GDGCHC	4 cut(s)	64, 303, 690, 929
Bsp143I	GATC	8 cut(s)	10, 119, 127, 447, 668, 882, 933, 1074
Bsp1720I	GCTNAGC	1 cut(s)	1236
BspANI	GGCC	5 cut(s)	44, 62, 186, 392, 545
BspCNI	CTCAG	2 cut(s)	1048, 1228
BspFNI	CGCG	5 cut(s)	88, 110, 297, 321, 363
BspLI	GGNNCC	8 cut(s)	34, 35, 62, 79, 475, 976, 984, 985
BspMI	ACCTGC	2 cut(s)	269, 619
BspPI	GGATC	3 cut(s)	18, 114, 663
BspT107I	GGYRCC	2 cut(s)	77, 473
BsrDI	GCAATG	2 cut(s)	1384, 1556
BsrI	ACTGG	2 cut(s)	313, 1471
BssECI	CCNNGG	9 cut(s)	181, 201, 288, 402, 549, 723, 978, 1441, 1482
BssMI	GATC	8 cut(s)	10, 119, 127, 447, 668, 882, 933, 1074
BssNI	GRCGYC	5 cut(s)	72, 78, 348, 381, 474
BssSI	CACGAG	4 cut(s)	98, 1113, 1388, 1535
BssT1I	CCWWGG	2 cut(s)	288, 1441
Bst2BI	CACGAG	4 cut(s)	98, 1113, 1388, 1535
Bst2UI	CCWGG	3 cut(s)	203, 404, 725
Bst4CI	ACNGT	3 cut(s)	18, 1026, 1486
Bst6I	CTCTTC	2 cut(s)	500, 780
BstACI	GRCGYC	5 cut(s)	72, 78, 348, 381, 474
BstBAI	YACGTR	1 cut(s)	55
BstC8I	GCNNGC	5 cut(s)	60, 299, 390, 1304, 1653
BstDEI	CTNAG	3 cut(s)	1056, 1071, 1236
BstDSI	CCRYGG	2 cut(s)	549, 1482
BstF5I	GGATG	4 cut(s)	669, 1279, 1413, 1507
BstFNI	CGCG	5 cut(s)	88, 110, 297, 321, 363
BstH2I	RGCGCY	5 cut(s)	81, 160, 288, 439, 477
BstHHI	GCGC	8 cut(s)	80, 90, 159, 287, 363, 438, 476, 1430
BstKTI	GATC	8 cut(s)	13, 122, 130, 450, 671, 885, 936, 1077
BstMAI	GTCTC	2 cut(s)	459, 1259
BstMBI	GATC	8 cut(s)	10, 119, 127, 447, 668, 882, 933, 1074
BstMCI	CGRYCG	1 cut(s)	546
BstMWI	GCNNNNNNNGC	7 cut(s)	369, 378, 562, 673, 706, 1124, 1374
BstNI	CCWGG	3 cut(s)	203, 404, 725
BstNSI	RCATGY	1 cut(s)	1244
BstPAI	GACNNNNGTC	2 cut(s)	71, 1091
BstSCI	CCNGG	5 cut(s)	201, 402, 671, 723, 1169
BstSFI	CTRYAG	1 cut(s)	1591
BstSLI	GKGCMC	1 cut(s)	64
BstUI	CGCG	5 cut(s)	88, 110, 297, 321, 363
BstV1I	GCAGC	4 cut(s)	187, 431, 502, 523
BstV2I	GAAGAC	1 cut(s)	828
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BstZI	CGGCCG	1 cut(s)	543
BsuRI	GGCC	5 cut(s)	44, 62, 186, 392, 545
BtgI	CCRYGG	2 cut(s)	549, 1482
BtgZI	GCGATG	1 cut(s)	91
BtrI	CACGTC	2 cut(s)	238, 280
BtsCI	GGATG	4 cut(s)	669, 1279, 1413, 1507
BtsIMutI	CAGTG	1 cut(s)	1053
BveI	ACCTGC	2 cut(s)	269, 619
Cac8I	GCNNGC	5 cut(s)	60, 299, 390, 1304, 1653
CfoI	GCGC	8 cut(s)	80, 90, 159, 287, 363, 438, 476, 1430
CseI	GACGC	4 cut(s)	94, 310, 356, 370
Csp6I	GTAC	5 cut(s)	112, 460, 643, 895, 1516
CspCI	CAANNNNNGTGG	2 cut(s)	940, 975
CviAII	CATG	6 cut(s)	38, 82, 496, 898, 1063, 1241
CviQI	GTAC	5 cut(s)	112, 460, 643, 895, 1516
DdeI	CTNAG	3 cut(s)	1056, 1071, 1236
DinI	GGCGCC	2 cut(s)	79, 475
DpnI	GATC	8 cut(s)	12, 121, 129, 449, 670, 884, 935, 1076
DpnII	GATC	8 cut(s)	10, 119, 127, 447, 668, 882, 933, 1074
DraIII	CACNNNGTG	1 cut(s)	694
DrdI	GACNNNNNNGTC	1 cut(s)	353
DriI	GACNNNNNGTC	1 cut(s)	412
DseDI	GACNNNNNNGTC	1 cut(s)	353
EaeI	YGGCCR	1 cut(s)	543
EagI	CGGCCG	1 cut(s)	543
Eam1104I	CTCTTC	2 cut(s)	500, 780
Eam1105I	GACNNNNNGTC	1 cut(s)	412
EarI	CTCTTC	2 cut(s)	500, 780
EciI	GGCGGA	1 cut(s)	329
Ecl136II	GAGCTC	2 cut(s)	301, 927
EclXI	CGGCCG	1 cut(s)	543
Eco130I	CCWWGG	2 cut(s)	288, 1441
Eco24I	GRGCYC	3 cut(s)	64, 303, 929
Eco32I	GATATC	1 cut(s)	1317
Eco47I	GGWCC	6 cut(s)	33, 133, 292, 975, 983, 1109
Eco47III	AGCGCT	2 cut(s)	158, 437
Eco52I	CGGCCG	1 cut(s)	543
Eco53kI	GAGCTC	2 cut(s)	301, 927
Eco57I	CTGAAG	1 cut(s)	1550
Eco72I	CACGTG	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	991
EcoICRI	GAGCTC	2 cut(s)	301, 927
EcoO109I	RGGNCCY	5 cut(s)	33, 43, 61, 391, 983
EcoRI	GAATTC	1 cut(s)	680
EcoRII	CCWGG	3 cut(s)	201, 402, 723
EcoRV	GATATC	1 cut(s)	1317
EcoT14I	CCWWGG	2 cut(s)	288, 1441
EcoT38I	GRGCYC	3 cut(s)	64, 303, 929
EgeI	GGCGCC	2 cut(s)	79, 475
EheI	GGCGCC	2 cut(s)	79, 475
ErhI	CCWWGG	2 cut(s)	288, 1441
FaeI	CATG	6 cut(s)	41, 85, 499, 901, 1066, 1244
FaqI	GGGAC	4 cut(s)	46, 301, 996, 1483
FatI	CATG	6 cut(s)	37, 81, 495, 897, 1062, 1240
FauI	CCCGC	2 cut(s)	51, 326
FblI	GTMKAC	1 cut(s)	1095
Fnu4HI	GCNGC	6 cut(s)	176, 364, 420, 491, 512, 546
FokI	GGATG	4 cut(s)	676, 1286, 1420, 1514
FriOI	GRGCYC	3 cut(s)	64, 303, 929
Fsp4HI	GCNGC	6 cut(s)	176, 364, 420, 491, 512, 546
FspBI	CTAG	3 cut(s)	125, 1122, 1442
GlaI	GCGC	8 cut(s)	79, 89, 158, 286, 362, 437, 475, 1429
GluI	GCNGC	6 cut(s)	176, 364, 420, 491, 512, 546
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	428
HaeII	RGCGCY	5 cut(s)	81, 160, 288, 439, 477
HaeIII	GGCC	5 cut(s)	44, 62, 186, 392, 545
HapII	CCGG	4 cut(s)	471, 673, 1170, 1247
HgaI	GACGC	4 cut(s)	94, 310, 356, 370
HhaI	GCGC	8 cut(s)	80, 90, 159, 287, 363, 438, 476, 1430
Hin1I	GRCGYC	5 cut(s)	72, 78, 348, 381, 474
Hin1II	CATG	6 cut(s)	41, 85, 499, 901, 1066, 1244
Hin6I	GCGC	8 cut(s)	78, 88, 157, 285, 361, 436, 474, 1428
HinP1I	GCGC	8 cut(s)	78, 88, 157, 285, 361, 436, 474, 1428
HincII	GTYRAC	1 cut(s)	1096
HindII	GTYRAC	1 cut(s)	1096
HinfI	GANTC	9 cut(s)	5, 227, 398, 413, 452, 467, 500, 518, 582
HpaII	CCGG	4 cut(s)	471, 673, 1170, 1247
HphI	GGTGA	2 cut(s)	667, 1055
Hpy166II	GTNNAC	5 cut(s)	330, 634, 835, 1096, 1112
Hpy188I	TCNGA	9 cut(s)	10, 163, 226, 232, 457, 571, 720, 931, 979
Hpy8I	GTNNAC	5 cut(s)	330, 634, 835, 1096, 1112
Hpy99I	CGWCG	4 cut(s)	77, 254, 350, 359
HpyAV	CCTTC	3 cut(s)	646, 1184, 1213
HpyCH4III	ACNGT	3 cut(s)	18, 1026, 1486
HpyCH4IV	ACGT	8 cut(s)	54, 72, 237, 249, 279, 429, 636, 1518
HpyCH4V	TGCA	8 cut(s)	105, 372, 628, 1036, 1294, 1399, 1459, 1655
HpyF10VI	GCNNNNNNNGC	7 cut(s)	369, 378, 562, 673, 706, 1124, 1374
HpyF3I	CTNAG	3 cut(s)	1056, 1071, 1236
HpySE526I	ACGT	8 cut(s)	54, 72, 237, 249, 279, 429, 636, 1518
Hsp92I	GRCGYC	5 cut(s)	72, 78, 348, 381, 474
Hsp92II	CATG	6 cut(s)	41, 85, 499, 901, 1066, 1244
HspAI	GCGC	8 cut(s)	78, 88, 157, 285, 361, 436, 474, 1428
KasI	GGCGCC	2 cut(s)	77, 473
KflI	GGGWCCC	2 cut(s)	33, 983
Kzo9I	GATC	8 cut(s)	10, 119, 127, 447, 668, 882, 933, 1074
Lsp1109I	GCAGC	4 cut(s)	187, 431, 502, 523
LweI	GCATC	2 cut(s)	114, 654
MaeI	CTAG	3 cut(s)	125, 1122, 1442
MaeII	ACGT	8 cut(s)	54, 72, 237, 249, 279, 429, 636, 1518
MaeIII	GTNAC	1 cut(s)	1609
MalI	GATC	8 cut(s)	12, 121, 129, 449, 670, 884, 935, 1076
MboI	GATC	8 cut(s)	10, 119, 127, 447, 668, 882, 933, 1074
MboII	GAAGA	5 cut(s)	517, 544, 797, 833, 901
MfeI	CAATTG	1 cut(s)	1037
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	4 cut(s)	64, 303, 690, 929
MluCI	AATT	7 cut(s)	26, 424, 680, 733, 754, 1037, 1563
Mly113I	GGCGCC	2 cut(s)	78, 474
MlyI	GAGTC	7 cut(s)	14, 221, 392, 422, 446, 461, 509
MmeI	TCCRAC	5 cut(s)	186, 249, 255, 591, 743
MslI	CAYNNNNRTG	2 cut(s)	570, 953
MspI	CCGG	4 cut(s)	471, 673, 1170, 1247
MspR9I	CCNGG	5 cut(s)	203, 404, 673, 725, 1171
MunI	CAATTG	1 cut(s)	1037
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	3 cut(s)	203, 404, 725
MvnI	CGCG	5 cut(s)	88, 110, 297, 321, 363
MwoI	GCNNNNNNNGC	7 cut(s)	369, 378, 562, 673, 706, 1124, 1374
NarI	GGCGCC	2 cut(s)	78, 474
NciI	CCSGG	2 cut(s)	673, 1171
NdeII	GATC	8 cut(s)	10, 119, 127, 447, 668, 882, 933, 1074
NlaIII	CATG	6 cut(s)	41, 85, 499, 901, 1066, 1244
NlaIV	GGNNCC	8 cut(s)	34, 35, 62, 79, 475, 976, 984, 985
NmeAIII	GCCGAG	2 cut(s)	162, 521
NmuCI	GTSAC	1 cut(s)	1609
NspI	RCATGY	1 cut(s)	1244
PaqCI	CACCTGC	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	6 cut(s)	14, 222, 276, 351, 354, 522
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	2 cut(s)	518, 582
PflFI	GACNNNGTC	3 cut(s)	215, 236, 278
PflMI	CCANNNNNTGG	1 cut(s)	1424
PkrI	GCNGC	6 cut(s)	177, 365, 421, 492, 513, 547
PleI	GAGTC	7 cut(s)	13, 221, 392, 421, 446, 461, 508
PluTI	GGCGCC	2 cut(s)	81, 477
PmaCI	CACGTG	1 cut(s)	55
PmlI	CACGTG	1 cut(s)	55
PpsI	GAGTC	7 cut(s)	13, 221, 392, 421, 446, 461, 508
Ppu21I	YACGTR	1 cut(s)	55
PpuMI	RGGWCCY	2 cut(s)	33, 983
PshAI	GACNNNNGTC	2 cut(s)	71, 1091
Psp124BI	GAGCTC	2 cut(s)	303, 929
Psp5II	RGGWCCY	2 cut(s)	33, 983
Psp6I	CCWGG	3 cut(s)	201, 402, 723
PspCI	CACGTG	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	3 cut(s)	201, 402, 723
PspN4I	GGNNCC	8 cut(s)	34, 35, 62, 79, 475, 976, 984, 985
PspOMI	GGGCCC	1 cut(s)	60
PspPPI	RGGWCCY	2 cut(s)	33, 983
PsuI	RGATCY	1 cut(s)	127
PsyI	GACNNNGTC	3 cut(s)	215, 236, 278
RsaI	GTAC	5 cut(s)	113, 461, 644, 896, 1517
RsaNI	GTAC	5 cut(s)	112, 460, 643, 895, 1516
RseI	CAYNNNNRTG	2 cut(s)	570, 953
SacI	GAGCTC	2 cut(s)	303, 929
SalI	GTCGAC	1 cut(s)	1094
SatI	GCNGC	6 cut(s)	176, 364, 420, 491, 512, 546
Sau3AI	GATC	8 cut(s)	10, 119, 127, 447, 668, 882, 933, 1074
SchI	GAGTC	7 cut(s)	14, 221, 392, 422, 446, 461, 509
ScrFI	CCNGG	5 cut(s)	203, 404, 673, 725, 1171
SduI	GDGCHC	4 cut(s)	64, 303, 690, 929
SfaNI	GCATC	2 cut(s)	114, 654
SfcI	CTRYAG	1 cut(s)	1591
SfoI	GGCGCC	2 cut(s)	79, 475
SinI	GGWCC	6 cut(s)	33, 133, 292, 975, 983, 1109
SmiMI	CAYNNNNRTG	2 cut(s)	570, 953
Sse9I	AATT	7 cut(s)	26, 424, 680, 733, 754, 1037, 1563
SspDI	GGCGCC	2 cut(s)	77, 473
SspMI	CTAG	3 cut(s)	125, 1122, 1442
SstI	GAGCTC	2 cut(s)	303, 929
StyD4I	CCNGG	5 cut(s)	201, 402, 671, 723, 1169
StyI	CCWWGG	2 cut(s)	288, 1441
TaaI	ACNGT	3 cut(s)	18, 1026, 1486
TaiI	ACGT	8 cut(s)	57, 75, 240, 252, 282, 432, 639, 1521
TasI	AATT	7 cut(s)	26, 424, 680, 733, 754, 1037, 1563
TatI	WGTACW	1 cut(s)	894
TauI	GCSGC	2 cut(s)	366, 548
TfiI	GAWTC	2 cut(s)	518, 582
TscAI	CASTG	1 cut(s)	1060
TseFI	GTSAC	1 cut(s)	1609
TseI	GCWGC	4 cut(s)	175, 419, 490, 511
Tsp45I	GTSAC	1 cut(s)	1609
TspDTI	ATGAA	2 cut(s)	574, 1051
TspGWI	ACGGA	5 cut(s)	83, 632, 840, 1115, 1487
TspRI	CASTG	1 cut(s)	1060
Tth111I	GACNNNGTC	3 cut(s)	215, 236, 278
Van91I	CCANNNNNTGG	1 cut(s)	1424
VpaK11BI	GGWCC	6 cut(s)	33, 133, 292, 975, 983, 1109
XapI	RAATTY	2 cut(s)	26, 680
XceI	RCATGY	1 cut(s)	1244
XmaJI	CCTAGG	1 cut(s)	1441
XmiI	GTMKAC	1 cut(s)	1095
XspI	CTAG	3 cut(s)	125, 1122, 1442
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.