Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Reverse (-)

33762701 .. 33767518

Gene Structure 4818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG176800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 194 bp

ATGGTCAGCGCCAAGATTCGCGACCTCGCCGACCATGTCAGTGCCAAGGTCTGCGACCTCGACCTCGCCCAGCCGCGCATCAACTCCACGCTCCTCCGTTTGGATGCGATTGTGGAGCTCGACCACACCCAGTCACGTGGAGGAATTTTCAAACAGTTGCAAACCATAAACTGGTTCTTCCTTCATCCTCACAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

64

Amino Acids

7.29

Weight (kDa)

6.89

Isoelectric Point (pI)

23.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	171
AccII	CGCG	2 cut(s)	21, 76
AciI	CCGC	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	144
AcvI	CACGTG	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	100, 171
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw21I	GWGCWC	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	144
AspLEI	GCGC	2 cut(s)	11, 78
BanII	GRGCYC	1 cut(s)	120
BbrPI	CACGTG	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	12
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	2 cut(s)	87, 94
BmuI	ACTGGG	1 cut(s)	124
BsaAI	YACGTR	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 171
Bse1I	ACTGG	2 cut(s)	130, 176
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	109, 184
BseLI	CCNNNNNNNGG	2 cut(s)	100, 171
BseNI	ACTGG	2 cut(s)	130, 176
BseRI	GAGGAG	1 cut(s)	83
BseYI	CCCAGC	1 cut(s)	69
Bsh1236I	CGCG	2 cut(s)	21, 76
BsiHKAI	GWGCWC	1 cut(s)	120
BslI	CCNNNNNNNGG	2 cut(s)	100, 171
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp68I	TCGCGA	1 cut(s)	21
BspACI	CCGC	1 cut(s)	74
BspFNI	CGCG	2 cut(s)	21, 76
BsrI	ACTGG	2 cut(s)	130, 176
BssECI	CCNNGG	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	109, 184
BstFNI	CGCG	2 cut(s)	21, 76
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 78
BstUI	CGCG	2 cut(s)	21, 76
BstXI	CCANNNNNNTGG	1 cut(s)	137
BtsCI	GGATG	2 cut(s)	109, 184
BtsIMutI	CAGTG	1 cut(s)	46
BtuMI	TCGCGA	1 cut(s)	21
CfoI	GCGC	2 cut(s)	11, 78
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	2 cut(s)	73, 118
CviKI_1	RGCY	2 cut(s)	73, 118
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	118
Eco72I	CACGTG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	38
FaiI	YATR	2 cut(s)	36, 167
FatI	CATG	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	2 cut(s)	116, 171
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	74
GlaI	GCGC	2 cut(s)	10, 77
GluI	GCNGC	1 cut(s)	74
GsaI	CCCAGC	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	12
HhaI	GCGC	2 cut(s)	11, 78
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	2 cut(s)	9, 76
HinP1I	GCGC	2 cut(s)	9, 76
HinfI	GANTC	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	1 cut(s)	160
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	2 cut(s)	9, 76
LmnI	GCTCC	2 cut(s)	96, 115
LpnPI	CCDG	3 cut(s)	83, 143, 157
LweI	GCATC	2 cut(s)	87, 94
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	1 cut(s)	132
MboII	GAAGA	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	1 cut(s)	144
MnlI	CCTC	5 cut(s)	35, 68, 74, 104, 134
MslI	CAYNNNNRTG	1 cut(s)	39
MvnI	CGCG	2 cut(s)	21, 76
NlaIII	CATG	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	132
NruI	TCGCGA	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	16
PflFI	GACNNNGTC	1 cut(s)	35
PflMI	CCANNNNNTGG	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	75
PmaCI	CACGTG	1 cut(s)	137
PmlI	CACGTG	1 cut(s)	137
Ppu21I	YACGTR	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	120
PspCI	CACGTG	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	69
PsyI	GACNNNGTC	1 cut(s)	35
RruI	TCGCGA	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	39
SacI	GAGCTC	1 cut(s)	120
SatI	GCNGC	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	6 cut(s)	27, 51, 60, 66, 120, 139
SfaNI	GCATC	2 cut(s)	87, 94
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	1 cut(s)	144
SsiI	CCGC	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	2 cut(s)	60, 120
TasI	AATT	1 cut(s)	144
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	16
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	132
Tsp45I	GTSAC	1 cut(s)	132
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	46
Tth111I	GACNNNGTC	1 cut(s)	35
Van91I	CCANNNNNTGG	1 cut(s)	171
XapI	RAATTY	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.