Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034305.1

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Reverse (-)

172 .. 1147

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034305.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggcagctctagcagcccatttatccatgacgcgcctcctccacgagtgcatagcctaccaatgcgccctggatctcaacctcgaccacctcctctcccagcgctccgacctcgacaagctcctctccaatctccataaatcctcccaggtcctcgacatcgtcaagtctgacgtcgaccacgtcctctccaacgtctcctccacctgcgacctcgccgaccacgttagcgccaaggcgggaagctcaaagctccacgccgaaatcgggtatgggtttcactggcagggctcggacggcgtgacgccggaatccggtcaccagtccagtagccggattccgatgaccggtagcaggattccggttatcgattgctggattccagtcaccggtagctggattcaggtcatcggtcggctgagtcgggtcaccggaccgccaccggagtcaagcaaggtggtctccaatgacttctttctcaaagtgacaaagaagaagatggcaaaattgtcccaaaataaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

174

Amino Acids

18.94

Weight (kDa)

8.37

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	215
AatII	GACGTC	1 cut(s)	177
Acc36I	ACCTGC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	1 cut(s)	34
AciI	CCGC	2 cut(s)	239, 437
AclWI	GGATC	1 cut(s)	81
AcyI	GRCGYC	2 cut(s)	174, 305
AfeI	AGCGCT	1 cut(s)	104
AfiI	CCNNNNNNNGG	7 cut(s)	267, 314, 333, 347, 354, 389, 396
AgeI	ACCGGT	2 cut(s)	347, 389
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	2 cut(s)	69, 147
AluBI	AGCT	5 cut(s)	8, 121, 246, 253, 396
AluI	AGCT	5 cut(s)	8, 121, 246, 253, 396
Alw26I	GTCTC	2 cut(s)	202, 466
AlwI	GGATC	1 cut(s)	81
Aor51HI	AGCGCT	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	5, 14
AsiGI	ACCGGT	2 cut(s)	347, 389
AspLEI	GCGC	4 cut(s)	36, 68, 105, 233
AspS9I	GGNCC	2 cut(s)	151, 434
AsuHPI	GGTGA	3 cut(s)	311, 379, 421
AvaII	GGWCC	2 cut(s)	151, 434
BanII	GRGCYC	1 cut(s)	293
BauI	CACGAG	1 cut(s)	44
BbvI	GCAGC	2 cut(s)	17, 26
BccI	CCATC	1 cut(s)	493
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	2 cut(s)	71, 149
BcoDI	GTCTC	2 cut(s)	202, 466
BfaI	CTAG	1 cut(s)	11
BfoI	RGCGCY	2 cut(s)	106, 234
BfuAI	ACCTGC	1 cut(s)	215
BisI	GCNGC	2 cut(s)	6, 15
BlsI	GCNGC	2 cut(s)	7, 16
Bme1390I	CCNGG	2 cut(s)	71, 149
Bme18I	GGWCC	2 cut(s)	151, 434
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	151, 434
BmrFI	CCNGG	2 cut(s)	71, 149
Bsa29I	ATCGAT	1 cut(s)	369
BsaHI	GRCGYC	2 cut(s)	174, 305
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	3 cut(s)	69, 147, 234
BsaWI	WCCGGW	6 cut(s)	314, 347, 361, 389, 431, 442
BsaXI	ACNNNNNCTCC	6 cut(s)	80, 110, 173, 185, 203, 215
Bsc4I	CCNNNNNNNGG	7 cut(s)	267, 314, 333, 347, 354, 389, 396
Bse118I	RCCGGY	2 cut(s)	347, 389
Bse1I	ACTGG	4 cut(s)	287, 322, 327, 383
BseBI	CCWGG	2 cut(s)	71, 149
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	3 cut(s)	69, 147, 234
BseLI	CCNNNNNNNGG	7 cut(s)	267, 314, 333, 347, 354, 389, 396
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	4 cut(s)	287, 322, 327, 383
BseRI	GAGGAG	4 cut(s)	29, 83, 113, 190
BseXI	GCAGC	2 cut(s)	17, 26
BseYI	CCCAGC	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	34
Bsh1285I	CGRYCG	1 cut(s)	415
BshTI	ACCGGT	2 cut(s)	347, 389
BshVI	ATCGAT	1 cut(s)	369
BsiEI	CGRYCG	1 cut(s)	415
BsiSI	CCGG	8 cut(s)	308, 315, 334, 348, 362, 390, 432, 443
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	7 cut(s)	267, 314, 333, 347, 354, 389, 396
BsmAI	GTCTC	2 cut(s)	202, 466
BsmBI	CGTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	496
Bso31I	GGTCTC	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	2 cut(s)	239, 437
BspCNI	CTCAG	1 cut(s)	411
BspDI	ATCGAT	1 cut(s)	369
BspFNI	CGCG	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	466
BsrFI	RCCGGY	2 cut(s)	347, 389
BsrI	ACTGG	4 cut(s)	287, 322, 327, 383
BssAI	RCCGGY	2 cut(s)	347, 389
BssECI	CCNNGG	3 cut(s)	69, 147, 234
BssMI	GATC	1 cut(s)	73
BssNI	GRCGYC	2 cut(s)	174, 305
BssSI	CACGAG	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	2 cut(s)	71, 149
BstACI	GRCGYC	2 cut(s)	174, 305
BstDEI	CTNAG	1 cut(s)	419
BstEII	GGTNACC	2 cut(s)	317, 427
BstFNI	CGCG	1 cut(s)	34
BstH2I	RGCGCY	2 cut(s)	106, 234
BstHHI	GCGC	4 cut(s)	36, 68, 105, 233
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	2 cut(s)	202, 466
BstMBI	GATC	1 cut(s)	73
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 14, 297
BstNI	CCWGG	2 cut(s)	71, 149
BstPI	GGTNACC	2 cut(s)	317, 427
BstSCI	CCNGG	2 cut(s)	69, 147
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	2 cut(s)	17, 26
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
Bsu15I	ATCGAT	1 cut(s)	369
BsuTUI	ATCGAT	1 cut(s)	369
BtrI	CACGTC	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	280
BveI	ACCTGC	1 cut(s)	215
CfoI	GCGC	4 cut(s)	36, 68, 105, 233
Cfr10I	RCCGGY	2 cut(s)	347, 389
Cfr13I	GGNCC	2 cut(s)	151, 434
ClaI	ATCGAT	1 cut(s)	369
CpoI	CGGWCCG	1 cut(s)	434
CseI	GACGC	2 cut(s)	40, 313
CspAI	ACCGGT	2 cut(s)	347, 389
CspCI	CAANNNNNGTGG	2 cut(s)	438, 473
CspI	CGGWCCG	1 cut(s)	434
CviAII	CATG	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	419
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	293
Eco31I	GGTCTC	1 cut(s)	466
Eco47I	GGWCC	2 cut(s)	151, 434
Eco47III	AGCGCT	1 cut(s)	104
Eco91I	GGTNACC	2 cut(s)	317, 427
EcoO109I	RGGNCCY	1 cut(s)	151
EcoO65I	GGTNACC	2 cut(s)	317, 427
EcoRII	CCWGG	2 cut(s)	69, 147
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	1 cut(s)	31
FaiI	YATR	4 cut(s)	29, 53, 138, 273
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	1 cut(s)	27
FauI	CCCGC	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	2 cut(s)	6, 15
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	2 cut(s)	6, 15
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	4 cut(s)	35, 67, 104, 232
GluI	GCNGC	2 cut(s)	6, 15
GsaI	CCCAGC	1 cut(s)	103
HaeII	RGCGCY	2 cut(s)	106, 234
HapII	CCGG	8 cut(s)	308, 315, 334, 348, 362, 390, 432, 443
HgaI	GACGC	2 cut(s)	40, 313
HhaI	GCGC	4 cut(s)	36, 68, 105, 233
Hin1I	GRCGYC	2 cut(s)	174, 305
Hin1II	CATG	1 cut(s)	31
Hin6I	GCGC	4 cut(s)	34, 66, 103, 231
HinP1I	GCGC	4 cut(s)	34, 66, 103, 231
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	7 cut(s)	311, 337, 358, 379, 400, 421, 446
HpaII	CCGG	8 cut(s)	308, 315, 334, 348, 362, 390, 432, 443
HphI	GGTGA	3 cut(s)	311, 379, 421
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	4 cut(s)	109, 172, 295, 342
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	1 cut(s)	179
HpyCH4IV	ACGT	4 cut(s)	174, 183, 195, 225
HpyCH4V	TGCA	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 14, 297
HpyF3I	CTNAG	1 cut(s)	419
HpySE526I	ACGT	4 cut(s)	174, 183, 195, 225
Hsp92I	GRCGYC	2 cut(s)	174, 305
Hsp92II	CATG	1 cut(s)	31
HspAI	GCGC	4 cut(s)	34, 66, 103, 231
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	3 cut(s)	110, 126, 258
Lsp1109I	GCAGC	2 cut(s)	17, 26
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	4 cut(s)	174, 183, 195, 225
MaeIII	GTNAC	5 cut(s)	301, 317, 385, 427, 484
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	2 cut(s)	505, 508
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	1 cut(s)	506
MlyI	GAGTC	2 cut(s)	430, 455
MmeI	TCCRAC	2 cut(s)	132, 216
MspI	CCGG	8 cut(s)	308, 315, 334, 348, 362, 390, 432, 443
MspR9I	CCNGG	2 cut(s)	71, 149
MvaI	CCWGG	2 cut(s)	71, 149
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	3 cut(s)	11, 14, 297
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	31
NmuCI	GTSAC	5 cut(s)	301, 317, 385, 427, 484
PaqCI	CACCTGC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 222
PfeI	GAWTC	5 cut(s)	311, 337, 358, 379, 400
PflFI	GACNNNGTC	2 cut(s)	161, 182
PinAI	ACCGGT	2 cut(s)	347, 389
PkrI	GCNGC	2 cut(s)	7, 16
PleI	GAGTC	2 cut(s)	429, 454
PpsI	GAGTC	2 cut(s)	429, 454
PpuMI	RGGWCCY	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	69, 147
PspEI	GGTNACC	2 cut(s)	317, 427
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	2 cut(s)	69, 147
PspPI	GGNCC	2 cut(s)	151, 434
PspPPI	RGGWCCY	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	73
PsyI	GACNNNGTC	2 cut(s)	161, 182
Rsr2I	CGGWCCG	1 cut(s)	434
RsrII	CGGWCCG	1 cut(s)	434
SalI	GTCGAC	1 cut(s)	176
SatI	GCNGC	2 cut(s)	6, 15
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	2 cut(s)	151, 434
SchI	GAGTC	2 cut(s)	430, 455
ScrFI	CCNGG	2 cut(s)	71, 149
SduI	GDGCHC	1 cut(s)	293
SinI	GGWCC	2 cut(s)	151, 434
Sse9I	AATT	1 cut(s)	506
SsiI	CCGC	2 cut(s)	239, 437
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	2 cut(s)	69, 147
StyI	CCWWGG	1 cut(s)	234
TaiI	ACGT	4 cut(s)	177, 186, 198, 228
TaqI	TCGA	5 cut(s)	84, 114, 156, 177, 369
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	1 cut(s)	506
TfiI	GAWTC	5 cut(s)	311, 337, 358, 379, 400
TscAI	CASTG	1 cut(s)	287
TseFI	GTSAC	5 cut(s)	301, 317, 385, 427, 484
TseI	GCWGC	2 cut(s)	5, 14
Tsp45I	GTSAC	5 cut(s)	301, 317, 385, 427, 484
TspRI	CASTG	1 cut(s)	287
Tth111I	GACNNNGTC	2 cut(s)	161, 182
VpaK11BI	GGWCC	2 cut(s)	151, 434
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	1 cut(s)	11
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.