Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007236.1

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 254

Gene Structure 253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007236.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 253 bp

atgaagtgcctcctccacgagtgcatagcctaccaacgcgccatggatctcaacctcaaccaccccctctcccagcgctccgacctcgataagcacatctccaatctccagaaatcctcccgggtccttgacatcatcaagtctgacgccgaccacgtcctctccaatgccttctccacctgcgacctcgcctaccacgtcagcgccaaggtccgcaagctcgacctcacccagtcacgcgtcaactccacgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

84

Amino Acids

9.52

Weight (kDa)

8.54

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	188
Acc36I	ACCTGC	1 cut(s)	188
AccII	CGCG	2 cut(s)	39, 240
AciI	CCGC	1 cut(s)	214
AclWI	GGATC	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	147
AfeI	AGCGCT	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	238
AjiI	CACGTC	2 cut(s)	157, 199
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
AlwI	GGATC	1 cut(s)	54
Ama87I	CYCGRG	1 cut(s)	120
Aor51HI	AGCGCT	1 cut(s)	77
AspLEI	GCGC	3 cut(s)	41, 78, 206
AspS9I	GGNCC	2 cut(s)	124, 211
AsuC2I	CCSGG	2 cut(s)	121, 122
AsuHPI	GGTGA	1 cut(s)	220
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	2 cut(s)	124, 211
BauI	CACGAG	1 cut(s)	17
BcnI	CCSGG	2 cut(s)	121, 122
BfoI	RGCGCY	2 cut(s)	79, 207
BfuAI	ACCTGC	1 cut(s)	188
Bme1390I	CCNGG	2 cut(s)	121, 122
Bme18I	GGWCC	2 cut(s)	124, 211
BmeT110I	CYCGRG	1 cut(s)	120
BmgBI	CACGTC	2 cut(s)	157, 199
BmgT120I	GGNCC	2 cut(s)	124, 211
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	121, 122
BmrI	ACTGGG	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	92
BpuMI	CCSGG	2 cut(s)	121, 122
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	3 cut(s)	42, 120, 207
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 146, 176
Bse1I	ACTGG	1 cut(s)	232
BseDI	CCNNGG	3 cut(s)	42, 120, 207
BseNI	ACTGG	1 cut(s)	232
BseYI	CCCAGC	1 cut(s)	72
Bsh1236I	CGCG	2 cut(s)	39, 240
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	121
BsoBI	CYCGRG	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	46
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	1 cut(s)	214
BspFNI	CGCG	2 cut(s)	39, 240
BspLI	GGNNCC	1 cut(s)	125
BspMI	ACCTGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	3 cut(s)	42, 120, 207
BssMI	GATC	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	17
BssT1I	CCWWGG	2 cut(s)	42, 207
Bst2BI	CACGAG	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	218
BstDSI	CCRYGG	1 cut(s)	42
BstFNI	CGCG	2 cut(s)	39, 240
BstH2I	RGCGCY	2 cut(s)	79, 207
BstHHI	GCGC	3 cut(s)	41, 78, 206
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstSCI	CCNGG	2 cut(s)	119, 120
BstUI	CGCG	2 cut(s)	39, 240
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	42
BtrI	CACGTC	2 cut(s)	157, 199
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	218
CfoI	GCGC	3 cut(s)	41, 78, 206
Cfr13I	GGNCC	2 cut(s)	124, 211
Cfr9I	CCCGGG	1 cut(s)	120
CseI	GACGC	2 cut(s)	155, 229
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	2 cut(s)	29, 220
CviKI_1	RGCY	2 cut(s)	29, 220
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	42, 207
Eco47I	GGWCC	2 cut(s)	124, 211
Eco47III	AGCGCT	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	124
EcoT14I	CCWWGG	2 cut(s)	42, 207
ErhI	CCWWGG	2 cut(s)	42, 207
FaeI	CATG	1 cut(s)	46
FaiI	YATR	2 cut(s)	26, 44
FatI	CATG	1 cut(s)	42
GlaI	GCGC	3 cut(s)	40, 77, 205
GsaI	CCCAGC	1 cut(s)	76
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	2 cut(s)	79, 207
HapII	CCGG	1 cut(s)	121
HgaI	GACGC	2 cut(s)	155, 229
HhaI	GCGC	3 cut(s)	41, 78, 206
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	46
Hin6I	GCGC	3 cut(s)	39, 76, 204
HinP1I	GCGC	3 cut(s)	39, 76, 204
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	82, 145
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	181
HpyCH4IV	ACGT	2 cut(s)	156, 198
HpyCH4V	TGCA	1 cut(s)	24
HpySE526I	ACGT	2 cut(s)	156, 198
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	46
HspAI	GCGC	3 cut(s)	39, 76, 204
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	5 cut(s)	86, 122, 134, 193, 245
MaeII	ACGT	2 cut(s)	156, 198
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MflI	RGATCY	1 cut(s)	46
MluI	ACGCGT	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	9 cut(s)	20, 23, 65, 77, 95, 127, 170, 197, 236
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	2 cut(s)	121, 122
MvnI	CGCG	2 cut(s)	39, 240
NciI	CCSGG	2 cut(s)	121, 122
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	234
PaqCI	CACCTGC	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 195
PflFI	GACNNNGTC	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	2 cut(s)	124, 211
PspPPI	RGGWCCY	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	46
PsyI	GACNNNGTC	1 cut(s)	155
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	2 cut(s)	124, 211
ScrFI	CCNGG	2 cut(s)	121, 122
SetI	ASST	9 cut(s)	57, 87, 159, 182, 189, 201, 213, 222, 228
SinI	GGWCC	2 cut(s)	124, 211
SmaI	CCCGGG	1 cut(s)	122
SsiI	CCGC	1 cut(s)	214
StyD4I	CCNGG	2 cut(s)	119, 120
StyI	CCWWGG	2 cut(s)	42, 207
TaiI	ACGT	2 cut(s)	159, 201
TaqI	TCGA	2 cut(s)	87, 222
TseFI	GTSAC	1 cut(s)	234
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	120
Tth111I	GACNNNGTC	1 cut(s)	155
VpaK11BI	GGWCC	2 cut(s)	124, 211
XmaI	CCCGGG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.