Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Reverse (-)

25058444 .. 25061153

Gene Structure 2710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0242900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGATTCCGGTAACAGCGGAAGTATGCAGTCCTCGAGCGGCGGCGACAACGAGTCGTACGACTCACGCGCGGAGTCGATCTCGGCCTTGCTGGGTCCCACCATGACTAACCACCACCACCACCACCCACCGCAAGTACCGCAGCAACAACAACGCCATCATCCTCATGTTGAGTTCGACACCTTATCCAACATCTTCGATTCGAGGCTCACAAACCCGAACCCGCTCGTCAACCTCGACATGGTGTGGTCCAAGACGCTGAGATCCGACCCGAGTATGTCCGATCTTGGCGGCCAGAACGAGCTCAGCCAATCCTTTTTGACCAATAGTCAACTAGGAGGACAAGTCAGCAGAACAGGAGTCGGCGGCGGCGGAGGAGGGTCATCTACTTTTACTCAGATCCCATCCTCGTCAGCTCCGAACGACCAGACCACCACCAACAACGTCGGCGGCGTTCGGAACAGCAACCCAAAAAAGAGGTCGAGAGCGTCGAGGCGTGCACCCACTACGGTTCTCACCACAGACACAACAAACTTCCGAGCCATGGTTCAAGAATTTACAGGTATTCCTGCACCCCCATTTACGAGTTCGCCTTTTCCTAGAAGCAGGTTGGATTTGTTCGGGTCTTCGGCTTCATCTATGGTTAGATCGGGCCCGGGTCCGAATCATATGGATCCTTCTTCTCTTCCTCCTTATCTGTTGAGACCATTTGCTCATAAAGCTCCACTACTACCTTCTCCTCCATCTCCATCTTTGTTACCCTCTAGTAATTCAAATACTAATAGTAATATTGGTGGTTCTAATCTACAACACTCTCAGAGTCTTTTGAACATGAACAACATGCAAAACTCCTCCTCTTCATCAGTTCTGAATTTTCAGTCCCTCTTTCAAAACCAGCAGCCTCAGCCGAATTTACCAAAATACCCATTACCCGGTTCAGGCAATATTCTTGGCTCCTCCAAGTCTCAAGGCTCTTTGGGTGTGCTTGAAGATCCGTTTGGTTTGAGCCATGGGCTAAATGTGCAGCAGCTTCCTAACATCGTGTCGTCGTCGTCCTCGGATGGTGGCCGTACGCTTCAGCAGCAGCAACCTAGGCACGACAATAACCAGAGGACGACAACGACGACAATGAACTGGGTTGACAACAACAACAAGAACGACGGCAATGTCGATCTTCTGAGGTCCGTCAATGGGAATTACAGTAATGGCAAACTAAACTACGCGGCTTCTTCTTCGTCGAATGTTGTCGATAAAGCTGGGGTGCAGCTGGAGAATAATGTGAGTACTACTACAGCTAGAAGTGAAGGTATGGTGGAATCATGGATTTGCTCTTCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

446

Amino Acids

47.61

Weight (kDa)

7.25

Isoelectric Point (pI)

66.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	166 - 193	1.2e-11	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1166
Acc36I	ACCTGC	1 cut(s)	597
AccBSI	CCGCTC	2 cut(s)	39, 226
AccII	CGCG	3 cut(s)	69, 71, 1223
AclWI	GGATC	5 cut(s)	258, 394, 668, 681, 986
AcoI	YGGCCR	2 cut(s)	292, 1066
AcsI	RAATTY	3 cut(s)	554, 871, 910
AcuI	CTGAAG	2 cut(s)	1061, 1317
AfaI	GTAC	4 cut(s)	59, 138, 1072, 1285
AfiI	CCNNNNNNNGG	5 cut(s)	241, 544, 932, 938, 1191
AgsI	TTSAA	5 cut(s)	551, 774, 829, 890, 989
AhdI	GACNNNNNGTC	2 cut(s)	52, 327
AjuI	GAANNNNNNNTTGG	2 cut(s)	981, 1013
AluBI	AGCT	7 cut(s)	304, 416, 722, 1030, 1256, 1267, 1295
AluI	AGCT	7 cut(s)	304, 416, 722, 1030, 1256, 1267, 1295
Alw21I	GWGCWC	2 cut(s)	306, 502
Alw26I	GTCTC	2 cut(s)	697, 969
Alw44I	GTGCAC	1 cut(s)	498
AlwI	GGATC	5 cut(s)	258, 394, 668, 681, 986
Ama87I	CYCGRG	3 cut(s)	34, 271, 655
AoxI	GGCC	4 cut(s)	84, 292, 652, 1066
ApaI	GGGCCC	1 cut(s)	656
ApaLI	GTGCAC	1 cut(s)	498
ApeKI	GCWGC	7 cut(s)	142, 898, 1024, 1027, 1081, 1084, 1264
ApoI	RAATTY	3 cut(s)	554, 871, 910
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AspA2I	CCTAGG	1 cut(s)	1091
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	6 cut(s)	95, 249, 652, 653, 659, 1182
AsuC2I	CCSGG	3 cut(s)	656, 657, 933
AsuHPI	GGTGA	1 cut(s)	508
AvaI	CYCGRG	3 cut(s)	34, 271, 655
AvaII	GGWCC	4 cut(s)	95, 249, 659, 1182
AvrII	CCTAGG	1 cut(s)	1091
BaeGI	GKGCMC	2 cut(s)	502, 656
BamHI	GGATCC	1 cut(s)	673
BanII	GRGCYC	2 cut(s)	306, 656
BbsI	GAAGAC	1 cut(s)	618
Bbv12I	GWGCWC	2 cut(s)	306, 502
BbvCI	CCTCAGC	1 cut(s)	903
BbvI	GCAGC	7 cut(s)	154, 910, 1036, 1039, 1093, 1096, 1276
BccI	CCATC	5 cut(s)	165, 412, 751, 757, 1055
BceAI	ACGGC	2 cut(s)	1053, 1177
BcnI	CCSGG	3 cut(s)	656, 657, 933
BcoDI	GTCTC	2 cut(s)	697, 969
BfaI	CTAG	5 cut(s)	335, 600, 765, 1092, 1296
BfmI	CTRYAG	1 cut(s)	1290
BfuAI	ACCTGC	1 cut(s)	597
BlnI	CCTAGG	1 cut(s)	1091
BlpI	GCTNAGC	1 cut(s)	305
BmcAI	AGTACT	1 cut(s)	1285
Bme1390I	CCNGG	3 cut(s)	656, 657, 933
Bme18I	GGWCC	4 cut(s)	95, 249, 659, 1182
BmeRI	GACNNNNNGTC	2 cut(s)	52, 327
BmeT110I	CYCGRG	3 cut(s)	34, 271, 655
BmgT120I	GGNCC	6 cut(s)	95, 249, 652, 653, 659, 1182
BmiI	GGNNCC	6 cut(s)	96, 97, 654, 660, 675, 955
BmrFI	CCNGG	3 cut(s)	656, 657, 933
BmrI	ACTGGG	1 cut(s)	1144
BmuI	ACTGGG	1 cut(s)	1144
BpiI	GAAGAC	1 cut(s)	618
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	1289
Bpu10I	CCTNAGC	1 cut(s)	903
Bpu1102I	GCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	951
BpuMI	CCSGG	3 cut(s)	656, 657, 933
BsaI	GGTCTC	1 cut(s)	697
BsaJI	CCNNGG	5 cut(s)	543, 655, 1009, 1056, 1091
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	5 cut(s)	241, 544, 932, 938, 1191
Bse1I	ACTGG	1 cut(s)	1139
Bse3DI	GCAATG	1 cut(s)	1171
BseDI	CCNNGG	5 cut(s)	543, 655, 1009, 1056, 1091
BseGI	GGATG	3 cut(s)	160, 404, 1066
BseLI	CCNNNNNNNGG	5 cut(s)	241, 544, 932, 938, 1191
BseMI	GCAATG	1 cut(s)	1171
BseMII	CTCAG	6 cut(s)	251, 319, 410, 830, 917, 1169
BseNI	ACTGG	1 cut(s)	1139
BseRI	GAGGAG	5 cut(s)	390, 729, 841, 844, 946
BseSI	GKGCMC	2 cut(s)	502, 656
BseXI	GCAGC	7 cut(s)	154, 910, 1036, 1039, 1093, 1096, 1276
BseYI	CCCAGC	2 cut(s)	91, 1256
BsgI	GTGCAG	3 cut(s)	555, 1043, 1283
Bsh1236I	CGCG	3 cut(s)	69, 71, 1223
BshFI	GGCC	4 cut(s)	86, 294, 654, 1068
BsiHKAI	GWGCWC	2 cut(s)	306, 502
BsiHKCI	CYCGRG	3 cut(s)	34, 271, 655
BsiSI	CCGG	3 cut(s)	9, 656, 933
BsiWI	CGTACG	2 cut(s)	57, 1070
BslFI	GGGAC	2 cut(s)	81, 865
BslI	CCNNNNNNNGG	5 cut(s)	241, 544, 932, 938, 1191
BsmAI	GTCTC	2 cut(s)	697, 969
BsmFI	GGGAC	2 cut(s)	81, 865
BsnI	GGCC	4 cut(s)	86, 294, 654, 1068
Bso31I	GGTCTC	1 cut(s)	697
BsoBI	CYCGRG	3 cut(s)	34, 271, 655
Bsp120I	GGGCCC	1 cut(s)	652
Bsp1286I	GDGCHC	3 cut(s)	306, 502, 656
Bsp143I	GATC	8 cut(s)	78, 263, 283, 399, 647, 673, 991, 1171
Bsp1720I	GCTNAGC	1 cut(s)	305
Bsp19I	CCATGG	2 cut(s)	543, 1009
BspANI	GGCC	4 cut(s)	86, 294, 654, 1068
BspCNI	CTCAG	6 cut(s)	252, 318, 409, 829, 916, 1170
BspFNI	CGCG	3 cut(s)	69, 71, 1223
BspLI	GGNNCC	6 cut(s)	96, 97, 654, 660, 675, 955
BspMI	ACCTGC	1 cut(s)	597
BspPI	GGATC	5 cut(s)	258, 394, 668, 681, 986
BspQI	GCTCTTC	1 cut(s)	1336
BspTNI	GGTCTC	1 cut(s)	697
BsrBI	CCGCTC	2 cut(s)	39, 226
BsrDI	GCAATG	1 cut(s)	1171
BsrI	ACTGG	1 cut(s)	1139
BssECI	CCNNGG	5 cut(s)	543, 655, 1009, 1056, 1091
BssMI	GATC	8 cut(s)	78, 263, 283, 399, 647, 673, 991, 1171
BssT1I	CCWWGG	3 cut(s)	543, 1009, 1091
Bst4CI	ACNGT	2 cut(s)	511, 1202
Bst6I	CTCTTC	3 cut(s)	690, 862, 1336
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	6 cut(s)	260, 305, 396, 816, 903, 1178
BstDSI	CCRYGG	2 cut(s)	543, 1009
BstF5I	GGATG	3 cut(s)	160, 404, 1066
BstFNI	CGCG	3 cut(s)	69, 71, 1223
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	8 cut(s)	81, 266, 286, 402, 650, 676, 994, 1174
BstMAI	GTCTC	2 cut(s)	697, 969
BstMBI	GATC	8 cut(s)	78, 263, 283, 399, 647, 673, 991, 1171
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 719, 904, 1021, 1081, 1093
BstNSI	RCATGY	1 cut(s)	844
BstSCI	CCNGG	3 cut(s)	654, 655, 931
BstSFI	CTRYAG	1 cut(s)	1290
BstSLI	GKGCMC	2 cut(s)	502, 656
BstUI	CGCG	3 cut(s)	69, 71, 1223
BstV1I	GCAGC	7 cut(s)	154, 910, 1036, 1039, 1093, 1096, 1276
BstV2I	GAAGAC	1 cut(s)	618
BstX2I	RGATCY	4 cut(s)	263, 399, 673, 991
BstYI	RGATCY	4 cut(s)	263, 399, 673, 991
BsuRI	GGCC	4 cut(s)	86, 294, 654, 1068
BtgI	CCRYGG	2 cut(s)	543, 1009
BtsCI	GGATG	3 cut(s)	160, 404, 1066
BveI	ACCTGC	1 cut(s)	597
Cac8I	GCNNGC	1 cut(s)	498
CfoI	GCGC	1 cut(s)	71
Cfr13I	GGNCC	6 cut(s)	95, 249, 652, 653, 659, 1182
Cfr9I	CCCGGG	1 cut(s)	655
CseI	GACGC	2 cut(s)	265, 477
Csp6I	GTAC	4 cut(s)	58, 137, 1071, 1284
CviAII	CATG	8 cut(s)	103, 167, 241, 544, 832, 841, 1010, 1320
CviQI	GTAC	4 cut(s)	58, 137, 1071, 1284
DdeI	CTNAG	6 cut(s)	260, 305, 396, 816, 903, 1178
DpnI	GATC	8 cut(s)	80, 265, 285, 401, 649, 675, 993, 1173
DpnII	GATC	8 cut(s)	78, 263, 283, 399, 647, 673, 991, 1171
DrdI	GACNNNNNNGTC	1 cut(s)	1166
DriI	GACNNNNNGTC	2 cut(s)	52, 327
DseDI	GACNNNNNNGTC	1 cut(s)	1166
EaeI	YGGCCR	2 cut(s)	292, 1066
Eam1104I	CTCTTC	3 cut(s)	690, 862, 1336
Eam1105I	GACNNNNNGTC	2 cut(s)	52, 327
EarI	CTCTTC	3 cut(s)	690, 862, 1336
EciI	GGCGGA	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	3 cut(s)	543, 1009, 1091
Eco24I	GRGCYC	2 cut(s)	306, 656
Eco31I	GGTCTC	1 cut(s)	697
Eco47I	GGWCC	4 cut(s)	95, 249, 659, 1182
Eco53kI	GAGCTC	1 cut(s)	304
Eco57I	CTGAAG	2 cut(s)	1061, 1317
Eco88I	CYCGRG	3 cut(s)	34, 271, 655
EcoICRI	GAGCTC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	95
EcoT14I	CCWWGG	3 cut(s)	543, 1009, 1091
EcoT38I	GRGCYC	2 cut(s)	306, 656
ErhI	CCWWGG	3 cut(s)	543, 1009, 1091
FaeI	CATG	8 cut(s)	106, 170, 244, 547, 835, 844, 1013, 1323
FaqI	GGGAC	2 cut(s)	81, 865
FatI	CATG	8 cut(s)	102, 166, 240, 543, 831, 840, 1009, 1319
FauI	CCCGC	1 cut(s)	231
FauNDI	CATATG	1 cut(s)	669
FokI	GGATG	3 cut(s)	147, 391, 1073
FriOI	GRGCYC	2 cut(s)	306, 656
FspBI	CTAG	5 cut(s)	335, 600, 765, 1092, 1296
GlaI	GCGC	1 cut(s)	70
GsaI	CCCAGC	2 cut(s)	95, 1260
GsuI	CTGGAG	1 cut(s)	1289
HaeIII	GGCC	4 cut(s)	86, 294, 654, 1068
HapII	CCGG	3 cut(s)	9, 656, 933
HgaI	GACGC	2 cut(s)	265, 477
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	8 cut(s)	106, 170, 244, 547, 835, 844, 1013, 1323
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HincII	GTYRAC	3 cut(s)	232, 332, 1141
HindII	GTYRAC	3 cut(s)	232, 332, 1141
HinfI	GANTC	9 cut(s)	5, 53, 62, 74, 200, 360, 664, 820, 1316
HpaII	CCGG	3 cut(s)	9, 656, 933
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	4 cut(s)	232, 332, 500, 1141
Hpy188III	TCNNGA	2 cut(s)	483, 551
Hpy8I	GTNNAC	4 cut(s)	232, 332, 500, 1141
Hpy99I	CGWCG	7 cut(s)	449, 493, 1051, 1054, 1126, 1163, 1240
HpyAV	CCTTC	3 cut(s)	687, 744, 1298
HpyCH4III	ACNGT	2 cut(s)	511, 1202
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	6 cut(s)	28, 500, 572, 844, 1024, 1264
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 719, 904, 1021, 1081, 1093
HpyF3I	CTNAG	6 cut(s)	260, 305, 396, 816, 903, 1178
HpySE526I	ACGT	1 cut(s)	444
Hsp92II	CATG	8 cut(s)	106, 170, 244, 547, 835, 844, 1013, 1323
HspAI	GCGC	1 cut(s)	69
KflI	GGGWCCC	1 cut(s)	95
Kzo9I	GATC	8 cut(s)	78, 263, 283, 399, 647, 673, 991, 1171
LguI	GCTCTTC	1 cut(s)	1336
LmnI	GCTCC	3 cut(s)	421, 727, 959
Lsp1109I	GCAGC	7 cut(s)	154, 910, 1036, 1039, 1093, 1096, 1276
MaeI	CTAG	5 cut(s)	335, 600, 765, 1092, 1296
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	2 cut(s)	11, 756
MalI	GATC	8 cut(s)	80, 265, 285, 401, 649, 675, 993, 1173
MbiI	CCGCTC	2 cut(s)	39, 226
MboI	GATC	8 cut(s)	78, 263, 283, 399, 647, 673, 991, 1171
MflI	RGATCY	4 cut(s)	263, 399, 673, 991
MhlI	GDGCHC	3 cut(s)	306, 502, 656
MluCI	AATT	5 cut(s)	554, 769, 871, 910, 1195
MlyI	GAGTC	5 cut(s)	56, 62, 83, 369, 829
MmeI	TCCRAC	3 cut(s)	213, 291, 591
MseI	TTAA	1 cut(s)	1339
MslI	CAYNNNNRTG	1 cut(s)	165
MspA1I	CMGCKG	2 cut(s)	18, 1267
MspI	CCGG	3 cut(s)	9, 656, 933
MspR9I	CCNGG	3 cut(s)	656, 657, 933
MvnI	CGCG	3 cut(s)	69, 71, 1223
MwoI	GCNNNNNNNGC	6 cut(s)	139, 719, 904, 1021, 1081, 1093
NciI	CCSGG	3 cut(s)	656, 657, 933
NcoI	CCATGG	2 cut(s)	543, 1009
NdeI	CATATG	1 cut(s)	669
NdeII	GATC	8 cut(s)	78, 263, 283, 399, 647, 673, 991, 1171
NlaIII	CATG	8 cut(s)	106, 170, 244, 547, 835, 844, 1013, 1323
NlaIV	GGNNCC	6 cut(s)	96, 97, 654, 660, 675, 955
NmeAIII	GCCGAG	1 cut(s)	62
NspI	RCATGY	1 cut(s)	844
PaeR7I	CTCGAG	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	1336
PcsI	WCGNNNNNNNCGW	7 cut(s)	57, 234, 416, 450, 488, 1121, 1167
PfeI	GAWTC	4 cut(s)	5, 200, 664, 1316
Pfl23II	CGTACG	2 cut(s)	57, 1070
PleI	GAGTC	5 cut(s)	56, 61, 82, 368, 828
PpsI	GAGTC	5 cut(s)	56, 61, 82, 368, 828
PpuMI	RGGWCCY	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	95
PspFI	CCCAGC	2 cut(s)	91, 1256
PspLI	CGTACG	2 cut(s)	57, 1070
PspN4I	GGNNCC	6 cut(s)	96, 97, 654, 660, 675, 955
PspOMI	GGGCCC	1 cut(s)	652
PspPI	GGNCC	6 cut(s)	95, 249, 652, 653, 659, 1182
PspPPI	RGGWCCY	1 cut(s)	95
PspXI	VCTCGAGB	1 cut(s)	34
PsuI	RGATCY	4 cut(s)	263, 399, 673, 991
PvuII	CAGCTG	1 cut(s)	1267
RsaI	GTAC	4 cut(s)	59, 138, 1072, 1285
RsaNI	GTAC	4 cut(s)	58, 137, 1071, 1284
RseI	CAYNNNNRTG	1 cut(s)	165
SacI	GAGCTC	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	1336
SaqAI	TTAA	1 cut(s)	1339
Sau3AI	GATC	8 cut(s)	78, 263, 283, 399, 647, 673, 991, 1171
Sau96I	GGNCC	6 cut(s)	95, 249, 652, 653, 659, 1182
ScaI	AGTACT	1 cut(s)	1285
SchI	GAGTC	5 cut(s)	56, 62, 83, 369, 829
ScrFI	CCNGG	3 cut(s)	656, 657, 933
SduI	GDGCHC	3 cut(s)	306, 502, 656
SfcI	CTRYAG	1 cut(s)	1290
Sfr274I	CTCGAG	1 cut(s)	34
SinI	GGWCC	4 cut(s)	95, 249, 659, 1182
SlaI	CTCGAG	1 cut(s)	34
SmaI	CCCGGG	1 cut(s)	657
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	2 cut(s)	34, 966
SmoI	CTYRAG	2 cut(s)	34, 966
Sse9I	AATT	5 cut(s)	554, 769, 871, 910, 1195
SspI	AATATT	2 cut(s)	790, 946
SspMI	CTAG	5 cut(s)	335, 600, 765, 1092, 1296
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	3 cut(s)	654, 655, 931
StyI	CCWWGG	3 cut(s)	543, 1009, 1091
TaaI	ACNGT	2 cut(s)	511, 1202
TaiI	ACGT	1 cut(s)	447
TasI	AATT	5 cut(s)	554, 769, 871, 910, 1195
TatI	WGTACW	1 cut(s)	1283
TauI	GCSGC	7 cut(s)	42, 45, 294, 369, 372, 453, 1226
TfiI	GAWTC	4 cut(s)	5, 200, 664, 1316
Tru1I	TTAA	1 cut(s)	1339
Tru9I	TTAA	1 cut(s)	1339
TseI	GCWGC	7 cut(s)	142, 898, 1024, 1027, 1081, 1084, 1264
TspDTI	ATGAA	4 cut(s)	624, 848, 849, 1145
TspGWI	ACGGA	2 cut(s)	984, 1174
TspMI	CCCGGG	1 cut(s)	655
VneI	GTGCAC	1 cut(s)	498
VpaK11BI	GGWCC	4 cut(s)	95, 249, 659, 1182
XapI	RAATTY	3 cut(s)	554, 871, 910
XceI	RCATGY	1 cut(s)	844
XhoI	CTCGAG	1 cut(s)	34
XmaI	CCCGGG	1 cut(s)	655
XmaJI	CCTAGG	1 cut(s)	1091
XspI	CTAG	5 cut(s)	335, 600, 765, 1092, 1296
ZrmI	AGTACT	1 cut(s)	1285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.