Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001795

Physical Location & Seq

Genomic Coordinates Reverse (-)

23382353 .. 23385496

Gene Structure 3144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1159900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

ATGGAATCGGATCAACCGTCCATTAAGTTCGGGACCCAAGAGGCCCTCTCTCACGTGCGAGCCCTGACGGACGTCGGCGCCATGACGCGCCTCCTCCACGAGTGCATCGCCTACCAGCGATCCCTAGATCTGGACCTCGACAACCTCCTCTCCCAGCGCTCCGACCTCGACAAGCAGCTCCTCGCCCTCCGCAAGTCCTCCCAGGTTCTCGACATCGTAAAGGCCGACTCCGACCACGTCCTCTCCAACGTCACCTCCACCTGCGACCTCGCCGACAACGTCAGCGCCAAGGTCCGCGAGCTCGATCTCGCCCAGTCCCGCGTCAAATCCACGCTCCTCCGCCTAGACGCCATCGTCGAGCGCGGCAACTGTATCGATGGCGTGAAGCAGGCCCTCGACGCCCAGGACTACGAGGCAGCCGCCAATTACGTCCAGCGCTTCCTCCAGATCGACTCCGAGTACCGGGATTCCGGCGCCGACCAGCGGGAGCAGCTCATGGAATCGAAGCGGCAGCTCGAATCCATCGTCAGGAAGAAGCTCTCGGCGGCGGTTGACCAGAGGGAGCATTCCAATGTATTGAGATTCATCAGGCTCTACACTCCGTTAGGGTTAGAAACGGAGGGTTTGCAGGTTTACGTTGGGTACTTGCGGAAGGTGATTGGGATGCGATCCCGGCTCGAATTCGAGCACTTGGTGGAGCTAATGGAGCAGAACAATCCGACCCAGGCGGTCAGTTTTGTTGGGTGTTTGACCAATTTGTTCAAGGACATAGTTTTGGCGGTGGAAGAGAACGATGAAATTCTGAGAGGGCTTTGTGGTGAAGACGGAGTTGTTTACGCCATTTGTGAGCTTCAAGAGGAGTGCGATACGAGGGGTAGTTTGATCTTGAAGAAGTACATGGACTATAGGAAATTGCCTAAGTTAAGCTCCGAGATCAATGCCCAGAACAAGAATTTGCTCAATGTGGGTGGCGTTGGTGTTGGGTCAGAGGGACCCGACCCGAGAGAGGTTGAACTGTTCTTGGAGGAGATATTGTCTTTGATGCAGTTGGGTGAGGATTACACTGAGTTCATGGTGTCTAAGATCAAGGGCTTGACGAATGTTGACCCGGATTTAGGTCCACGAGCCACTAAGGCTTTTAGGAGTGGAAGTTTTAACAAGGTGGTTCAGGACATTACCGGGTTTTATGTCATATTAGAAGGTTTCTTTATGGTGGAGAATGTGAGGAAGGCTATAAGGATCGATGAACATGTGCCTGACAGTCTCACGACTTCAATGGTGGACGACGTGTTCTATGTTTTGCAGAGTTGCTTGCGGAGGGCAATATCCACTTTGAATATCAGCTCAGTGATTGCTGTGTTGAGTGGTGCGAGTAGTTTGTTGAGCAATGAGTATCACGAGGCTTTGCAAGAGAGGATGAGAGAGCCAAATCTTGGCGCAAAGCTGTTCCTAGGTGGTGTTGGGGTGCAAAAAACTGGGACGGAGATTGCCACGGTTTTGAAAATAATATGGATGTCAGTAGCGAAAAAGGTCAAGTCTTGCCTGTCCGAGCTAGGGGATATGAGCAACACATTCAAGCAAGCGTTGAATGCTGGCTTGGAACAACTTGTGGCTACTGTGACACCCCGTATCCGTCCAGTGCTAGATAATGTGGCAACGATCAGCTATGAGCTATCAGAGGCTGAATACGCAGATAATGAGGTTAACGACCCATGGGTTCAAAGACTTCTTCATGCTGTTGAGACGAATGTAGCATGGCTCCAGCCGCTAATGACTGCCAACAACTACGACTCATTTGTGCATTTTGTCATCGAGTTCATTGTGAAGAGGCTTGAAGTGATTATGATGCAGAAGAGATTCAGCCAACTTGGAGGCCTTCAGCTCGACAGAGATGCCAGGGCATTGGTAAGCCACTTCTCTGGTATGACTCAAAGGACCGTCAGAGACAAATTTGCGCGTCTCACACAAATGGCGACAATCCTGAACTTGGAAAAGGTCTCGGAGATTCTTGATTTCTGGGGCGAGAACTCGGGACCTATGACCTGGAGACTGACCCCAGCCGAGGTCAGGCGAGTCCTGGGTCTGAGAGTTGATTTTAAACCAGAAGCAATTTCCGCTCTTAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

710

Amino Acids

79.59

Weight (kDa)

5.27

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG4_N	PF20663	62 - 154	4.3e-28	Conserved oligomeric Golgi complex subunit 4, N-terminal
COG4_m	PF08318	194 - 473	6.1e-73	COG4 transport protein, middle alpha-helical bundle
COG4_C	PF20662	508 - 691	3.1e-54	Conserved oligomeric Golgi complex subunit 4, C-terminal
RINT1_TIP1	PF04437	527 - 666	1.9e-07	RINT-1/TIP-1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01395
fragaria_vesca	FvH4_4g00571 FvH4_5g29942 FvH4_5g30911 FvH4_7g17670
malus_domestica	MD07G1159700.v1.1 MD07G1159800.v1.1 MD07G1159900.v1.1
prunus_persica	Prupe.2G092100_v2.0.a1 Prupe.2G197800_v2.0.a1 Prupe.2G197800_v2.0.a1
pyrus_communis	pycom01g11300 pycom07g15620
rosa_chinensis	RchiOBHm_Chr1g0334501 RchiOBHm_Chr1g0334511
rosa_laevigata	RLG00000014722 RLG00000018723 RLG00000027257 RLG00000029448
rosa_multiflora	Rmu_co8086664.1_g000001 Rmu_sc0000066.1_g000041 Rmu_sc0003541.1_g000019 Rmu_sc0005302.1_g000007 Rmu_sc0005482.1_g000008 Rmu_sc0007236.1_g000001 Rmu_sc0012136.1_g000029 Rmu_sc0012270.1_g000004 Rmu_sc0033476.1_g000001 Rmu_sc0034305.1_g000001 Rmu_ssc0000404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00120980 Rroxscaffold_4G00294850 Rroxscaffold_4G00316790 Rroxscaffold_5G00373360
rosa_rugosa	Rorug01G0114400 Rorug01G0114500 Rorug02G0242900 Rorug02G0243000
rosa_samantha	Rh1AG139600 Rh1AG176800 Rh1BG105900 Rh1CG131500 Rh1DG143500 Rh6BG398800 Rh7BG198900
rosa_wichuraiana	Rw1G011510 Rw2G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	269
AasI	GACNNNNNNGTC	1 cut(s)	353
AatII	GACGTC	1 cut(s)	75
Acc36I	ACCTGC	2 cut(s)	269, 619
AccB1I	GGYRCC	2 cut(s)	77, 473
AccB7I	CCANNNNNTGG	1 cut(s)	1433
AccBSI	CCGCTC	1 cut(s)	2117
AccII	CGCG	5 cut(s)	88, 297, 321, 363, 1957
AclWI	GGATC	4 cut(s)	18, 114, 663, 1247
AcsI	RAATTY	4 cut(s)	680, 798, 952, 1949
AcuI	CTGAAG	1 cut(s)	1862
AcvI	CACGTG	1 cut(s)	55
AcyI	GRCGYC	5 cut(s)	72, 78, 348, 399, 474
AdeI	CACNNNGTG	1 cut(s)	694
AfaI	GTAC	3 cut(s)	461, 644, 896
AfeI	AGCGCT	2 cut(s)	158, 437
AflII	CTTAAG	1 cut(s)	2120
AflIII	ACRYGT	2 cut(s)	1249, 1287
AjiI	CACGTC	2 cut(s)	238, 1288
AjnI	CCWGG	6 cut(s)	201, 402, 723, 1895, 2042, 2076
AjuI	GAANNNNNNNTTGG	2 cut(s)	1580, 1612
AloI	GAACNNNNNNTCC	2 cut(s)	1274, 1306
Alw21I	GWGCWC	2 cut(s)	303, 690
Alw26I	GTCTC	6 cut(s)	1268, 1736, 1938, 1964, 2002, 2041
AlwI	GGATC	4 cut(s)	18, 114, 663, 1247
AlwNI	CAGNNNCTG	1 cut(s)	1682
Ama87I	CYCGRG	2 cut(s)	1000, 2029
Aor51HI	AGCGCT	2 cut(s)	158, 437
AoxI	GGCC	4 cut(s)	42, 222, 390, 1873
ApeKI	GCWGC	4 cut(s)	175, 416, 490, 511
ApoI	RAATTY	4 cut(s)	680, 798, 952, 1949
ArsI	GACNNNNNNTTYG	2 cut(s)	510, 542
Asp700I	GAANNNNTTC	1 cut(s)	1856
AspA2I	CCTAGG	1 cut(s)	1450
AspLEI	GCGC	9 cut(s)	80, 90, 159, 287, 363, 438, 476, 1439, 1957
AspS9I	GGNCC	9 cut(s)	33, 43, 133, 292, 391, 992, 1118, 1935, 2033
AsuC2I	CCSGG	4 cut(s)	464, 673, 1109, 1180
AsuHPI	GGTGA	4 cut(s)	244, 667, 830, 1064
AvaI	CYCGRG	2 cut(s)	1000, 2029
AvaII	GGWCC	7 cut(s)	33, 133, 292, 992, 1118, 1935, 2033
AvrII	CCTAGG	1 cut(s)	1450
BanI	GGYRCC	2 cut(s)	77, 473
BanII	GRGCYC	2 cut(s)	64, 303
BauI	CACGAG	3 cut(s)	98, 1122, 1397
BbrPI	CACGTG	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	828
Bbv12I	GWGCWC	2 cut(s)	303, 690
BbvI	GCAGC	4 cut(s)	187, 428, 502, 523
BccI	CCATC	3 cut(s)	359, 371, 530
BcgI	CGANNNNNNTGC	6 cut(s)	355, 389, 920, 954, 1874, 1908
BciT130I	CCWGG	6 cut(s)	203, 404, 725, 1897, 2044, 2078
BciVI	GTATCC	1 cut(s)	1640
BcnI	CCSGG	4 cut(s)	464, 673, 1109, 1180
BcoDI	GTCTC	6 cut(s)	1268, 1736, 1938, 1964, 2002, 2041
BfaI	CTAG	5 cut(s)	125, 344, 1451, 1553, 1643
BfmI	CTRYAG	1 cut(s)	904
BfoI	RGCGCY	5 cut(s)	81, 160, 288, 439, 477
BfrI	CTTAAG	1 cut(s)	2120
BfuAI	ACCTGC	2 cut(s)	269, 619
BfuI	GTATCC	1 cut(s)	1640
BglI	GCCNNNNNGGC	1 cut(s)	1133
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	9 cut(s)	176, 364, 417, 420, 491, 509, 512, 546, 1766
BlnI	CCTAGG	1 cut(s)	1450
BlsI	GCNGC	9 cut(s)	177, 365, 418, 421, 492, 510, 513, 547, 1767
Bme18I	GGWCC	7 cut(s)	33, 133, 292, 992, 1118, 1935, 2033
BmeT110I	CYCGRG	2 cut(s)	1000, 2029
BmgBI	CACGTC	2 cut(s)	238, 1288
BmgT120I	GGNCC	9 cut(s)	33, 43, 133, 292, 391, 992, 1118, 1935, 2033
BmiI	GGNNCC	8 cut(s)	34, 35, 79, 475, 993, 994, 1760, 2034
BmrI	ACTGGG	2 cut(s)	307, 1485
BmsI	GCATC	5 cut(s)	114, 654, 1032, 1836, 1882
BmuI	ACTGGG	2 cut(s)	307, 1485
BoxI	GACNNNNGTC	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	828
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
BpmI	CTGGAG	3 cut(s)	428, 1745, 2065
BpuMI	CCSGG	4 cut(s)	464, 673, 1109, 1180
Bsa29I	ATCGAT	2 cut(s)	375, 1242
BsaAI	YACGTR	1 cut(s)	55
BsaHI	GRCGYC	5 cut(s)	72, 78, 348, 399, 474
BsaI	GGTCTC	1 cut(s)	2002
Bse1I	ACTGG	3 cut(s)	313, 1480, 1637
Bse3DI	GCAATG	1 cut(s)	1393
BseBI	CCWGG	6 cut(s)	203, 404, 725, 1897, 2044, 2078
BseCI	ATCGAT	2 cut(s)	375, 1242
BseGI	GGATG	3 cut(s)	669, 1422, 1518
BseMI	GCAATG	1 cut(s)	1393
BseMII	CTCAG	4 cut(s)	794, 1056, 1359, 2075
BseNI	ACTGG	3 cut(s)	313, 1480, 1637
BseRI	GAGGAG	6 cut(s)	83, 137, 170, 326, 872, 1040
BseXI	GCAGC	4 cut(s)	187, 428, 502, 523
BseYI	CCCAGC	2 cut(s)	153, 2056
Bsh1236I	CGCG	5 cut(s)	88, 297, 321, 363, 1957
BshFI	GGCC	4 cut(s)	44, 224, 392, 1875
BshNI	GGYRCC	2 cut(s)	77, 473
BshVI	ATCGAT	2 cut(s)	375, 1242
BsiHKAI	GWGCWC	2 cut(s)	303, 690
BsiHKCI	CYCGRG	2 cut(s)	1000, 2029
BsiSI	CCGG	5 cut(s)	463, 471, 673, 1109, 1179
BslFI	GGGAC	5 cut(s)	46, 301, 1005, 1492, 2046
BsmAI	GTCTC	6 cut(s)	1268, 1736, 1938, 1964, 2002, 2041
BsmBI	CGTCTC	2 cut(s)	1736, 1964
BsmFI	GGGAC	5 cut(s)	46, 301, 1005, 1492, 2046
BsmI	GAATGC	2 cut(s)	565, 1594
BsnI	GGCC	4 cut(s)	44, 224, 392, 1875
Bso31I	GGTCTC	1 cut(s)	2002
BsoBI	CYCGRG	2 cut(s)	1000, 2029
Bsp1286I	GDGCHC	3 cut(s)	64, 303, 690
Bsp19I	CCATGG	1 cut(s)	1712
BspANI	GGCC	4 cut(s)	44, 224, 392, 1875
BspCNI	CTCAG	4 cut(s)	795, 1057, 1358, 2076
BspDI	ATCGAT	2 cut(s)	375, 1242
BspFNI	CGCG	5 cut(s)	88, 297, 321, 363, 1957
BspLI	GGNNCC	8 cut(s)	34, 35, 79, 475, 993, 994, 1760, 2034
BspMI	ACCTGC	2 cut(s)	269, 619
BspPI	GGATC	4 cut(s)	18, 114, 663, 1247
BspT107I	GGYRCC	2 cut(s)	77, 473
BspTI	CTTAAG	1 cut(s)	2120
BspTNI	GGTCTC	1 cut(s)	2002
BsrBI	CCGCTC	1 cut(s)	2117
BsrDI	GCAATG	1 cut(s)	1393
BsrI	ACTGG	3 cut(s)	313, 1480, 1637
BssNI	GRCGYC	5 cut(s)	72, 78, 348, 399, 474
BssSI	CACGAG	3 cut(s)	98, 1122, 1397
BssT1I	CCWWGG	3 cut(s)	288, 1450, 1712
Bst2BI	CACGAG	3 cut(s)	98, 1122, 1397
Bst2UI	CCWGG	6 cut(s)	203, 404, 725, 1897, 2044, 2078
Bst4CI	ACNGT	7 cut(s)	18, 371, 1017, 1262, 1495, 1618, 1939
Bst6I	CTCTTC	3 cut(s)	780, 1820, 1847
BstACI	GRCGYC	5 cut(s)	72, 78, 348, 399, 474
BstAFI	CTTAAG	1 cut(s)	2120
BstBAI	YACGTR	1 cut(s)	55
BstC8I	GCNNGC	6 cut(s)	60, 299, 390, 1313, 1581, 1594
BstDEI	CTNAG	7 cut(s)	803, 918, 1065, 1080, 1131, 1345, 2084
BstDSI	CCRYGG	2 cut(s)	1491, 1712
BstF5I	GGATG	3 cut(s)	669, 1422, 1518
BstFNI	CGCG	5 cut(s)	88, 297, 321, 363, 1957
BstH2I	RGCGCY	5 cut(s)	81, 160, 288, 439, 477
BstHHI	GCGC	9 cut(s)	80, 90, 159, 287, 363, 438, 476, 1439, 1957
BstMAI	GTCTC	6 cut(s)	1268, 1736, 1938, 1964, 2002, 2041
BstMWI	GCNNNNNNNGC	9 cut(s)	398, 490, 673, 706, 1133, 1589, 1688, 1765, 2114
BstNI	CCWGG	6 cut(s)	203, 404, 725, 1897, 2044, 2078
BstNSI	RCATGY	1 cut(s)	1253
BstPAI	GACNNNNGTC	1 cut(s)	71
BstSFI	CTRYAG	1 cut(s)	904
BstUI	CGCG	5 cut(s)	88, 297, 321, 363, 1957
BstV1I	GCAGC	4 cut(s)	187, 428, 502, 523
BstV2I	GAAGAC	1 cut(s)	828
BstX2I	RGATCY	1 cut(s)	127
BstXI	CCANNNNNNTGG	2 cut(s)	1903, 1919
BstYI	RGATCY	1 cut(s)	127
Bsu15I	ATCGAT	2 cut(s)	375, 1242
BsuI	GTATCC	1 cut(s)	1640
BsuRI	GGCC	4 cut(s)	44, 224, 392, 1875
BsuTUI	ATCGAT	2 cut(s)	375, 1242
BtgI	CCRYGG	2 cut(s)	1491, 1712
BtgZI	GCGATG	1 cut(s)	91
BtrI	CACGTC	2 cut(s)	238, 1288
BtsCI	GGATG	3 cut(s)	669, 1422, 1518
BtsIMutI	CAGTG	3 cut(s)	1062, 1353, 1644
BveI	ACCTGC	2 cut(s)	269, 619
Cac8I	GCNNGC	6 cut(s)	60, 299, 390, 1313, 1581, 1594
CaiI	CAGNNNCTG	1 cut(s)	1682
CfoI	GCGC	9 cut(s)	80, 90, 159, 287, 363, 438, 476, 1439, 1957
Cfr13I	GGNCC	9 cut(s)	33, 43, 133, 292, 391, 992, 1118, 1935, 2033
ClaI	ATCGAT	2 cut(s)	375, 1242
CseI	GACGC	5 cut(s)	94, 310, 356, 407, 1946
Csp6I	GTAC	3 cut(s)	460, 643, 895
CspCI	CAANNNNNGTGG	2 cut(s)	949, 984
CviAII	CATG	8 cut(s)	82, 496, 898, 1072, 1250, 1713, 1733, 1755
CviQI	GTAC	3 cut(s)	460, 643, 895
DdeI	CTNAG	7 cut(s)	803, 918, 1065, 1080, 1131, 1345, 2084
DinI	GGCGCC	2 cut(s)	79, 475
DraI	TTTAAA	1 cut(s)	2098
DraIII	CACNNNGTG	1 cut(s)	694
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Eam1104I	CTCTTC	3 cut(s)	780, 1820, 1847
EarI	CTCTTC	3 cut(s)	780, 1820, 1847
EciI	GGCGGA	1 cut(s)	329
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	3 cut(s)	288, 1450, 1712
Eco147I	AGGCCT	1 cut(s)	1875
Eco24I	GRGCYC	2 cut(s)	64, 303
Eco31I	GGTCTC	1 cut(s)	2002
Eco47I	GGWCC	7 cut(s)	33, 133, 292, 992, 1118, 1935, 2033
Eco47III	AGCGCT	2 cut(s)	158, 437
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	1862
Eco72I	CACGTG	1 cut(s)	55
Eco88I	CYCGRG	2 cut(s)	1000, 2029
EcoICRI	GAGCTC	1 cut(s)	301
EcoO109I	RGGNCCY	5 cut(s)	33, 43, 391, 992, 2033
EcoRI	GAATTC	1 cut(s)	680
EcoRII	CCWGG	6 cut(s)	201, 402, 723, 1895, 2042, 2076
EcoT14I	CCWWGG	3 cut(s)	288, 1450, 1712
EcoT38I	GRGCYC	2 cut(s)	64, 303
EgeI	GGCGCC	2 cut(s)	79, 475
EheI	GGCGCC	2 cut(s)	79, 475
ErhI	CCWWGG	3 cut(s)	288, 1450, 1712
Esp3I	CGTCTC	2 cut(s)	1736, 1964
FaeI	CATG	8 cut(s)	85, 499, 901, 1075, 1253, 1716, 1736, 1758
FaqI	GGGAC	5 cut(s)	46, 301, 1005, 1492, 2046
FatI	CATG	8 cut(s)	81, 495, 897, 1071, 1249, 1712, 1732, 1754
FauI	CCCGC	2 cut(s)	326, 477
Fnu4HI	GCNGC	9 cut(s)	176, 364, 417, 420, 491, 509, 512, 546, 1766
FokI	GGATG	3 cut(s)	676, 1429, 1525
FriOI	GRGCYC	2 cut(s)	64, 303
Fsp4HI	GCNGC	9 cut(s)	176, 364, 417, 420, 491, 509, 512, 546, 1766
FspBI	CTAG	5 cut(s)	125, 344, 1451, 1553, 1643
GlaI	GCGC	9 cut(s)	79, 89, 158, 286, 362, 437, 475, 1438, 1956
GluI	GCNGC	9 cut(s)	176, 364, 417, 420, 491, 509, 512, 546, 1766
GsaI	CCCAGC	2 cut(s)	157, 2060
GsuI	CTGGAG	3 cut(s)	428, 1745, 2065
HaeII	RGCGCY	5 cut(s)	81, 160, 288, 439, 477
HaeIII	GGCC	4 cut(s)	44, 224, 392, 1875
HapII	CCGG	5 cut(s)	463, 471, 673, 1109, 1179
HgaI	GACGC	5 cut(s)	94, 310, 356, 407, 1946
HhaI	GCGC	9 cut(s)	80, 90, 159, 287, 363, 438, 476, 1439, 1957
Hin1I	GRCGYC	5 cut(s)	72, 78, 348, 399, 474
Hin1II	CATG	8 cut(s)	85, 499, 901, 1075, 1253, 1716, 1736, 1758
Hin6I	GCGC	9 cut(s)	78, 88, 157, 285, 361, 436, 474, 1437, 1955
HinP1I	GCGC	9 cut(s)	78, 88, 157, 285, 361, 436, 474, 1437, 1955
HincII	GTYRAC	3 cut(s)	553, 1105, 1705
HindII	GTYRAC	3 cut(s)	553, 1105, 1705
HpaI	GTTAAC	1 cut(s)	1705
HpaII	CCGG	5 cut(s)	463, 471, 673, 1109, 1179
HphI	GGTGA	4 cut(s)	244, 667, 830, 1064
Hpy166II	GTNNAC	7 cut(s)	553, 634, 835, 1105, 1121, 1282, 1705
Hpy8I	GTNNAC	7 cut(s)	553, 634, 835, 1105, 1121, 1282, 1705
Hpy99I	CGWCG	4 cut(s)	77, 359, 401, 1289
HpyAV	CCTTC	4 cut(s)	646, 1193, 1222, 1886
HpyCH4III	ACNGT	7 cut(s)	18, 371, 1017, 1262, 1495, 1618, 1939
HpyCH4IV	ACGT	8 cut(s)	54, 72, 237, 249, 279, 429, 636, 1287
HpyCH4V	TGCA	8 cut(s)	105, 628, 1045, 1303, 1408, 1468, 1801, 1849
HpyF10VI	GCNNNNNNNGC	9 cut(s)	398, 490, 673, 706, 1133, 1589, 1688, 1765, 2114
HpyF3I	CTNAG	7 cut(s)	803, 918, 1065, 1080, 1131, 1345, 2084
HpySE526I	ACGT	8 cut(s)	54, 72, 237, 249, 279, 429, 636, 1287
Hsp92I	GRCGYC	5 cut(s)	72, 78, 348, 399, 474
Hsp92II	CATG	8 cut(s)	85, 499, 901, 1075, 1253, 1716, 1736, 1758
HspAI	GCGC	9 cut(s)	78, 88, 157, 285, 361, 436, 474, 1437, 1955
KasI	GGCGCC	2 cut(s)	77, 473
KflI	GGGWCCC	2 cut(s)	33, 992
KspAI	GTTAAC	1 cut(s)	1705
LmnI	GCTCC	9 cut(s)	164, 183, 339, 487, 562, 697, 706, 932, 1764
Lsp1109I	GCAGC	4 cut(s)	187, 428, 502, 523
LweI	GCATC	5 cut(s)	114, 654, 1032, 1836, 1882
MaeI	CTAG	5 cut(s)	125, 344, 1451, 1553, 1643
MaeII	ACGT	8 cut(s)	54, 72, 237, 249, 279, 429, 636, 1287
MaeIII	GTNAC	2 cut(s)	250, 1618
MbiI	CCGCTC	1 cut(s)	2117
MboII	GAAGA	7 cut(s)	544, 797, 833, 901, 1721, 1837, 1864
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	3 cut(s)	64, 303, 690
MluCI	AATT	8 cut(s)	424, 680, 754, 798, 911, 952, 1949, 2109
Mly113I	GGCGCC	2 cut(s)	78, 474
MlyI	GAGTC	5 cut(s)	221, 446, 1784, 1921, 2082
MmeI	TCCRAC	4 cut(s)	186, 255, 270, 743
MroXI	GAANNNNTTC	1 cut(s)	1856
MseI	TTAA	6 cut(s)	24, 923, 1155, 1704, 2097, 2121
MslI	CAYNNNNRTG	2 cut(s)	570, 1967
MspA1I	CMGCKG	1 cut(s)	484
MspCI	CTTAAG	1 cut(s)	2120
MspI	CCGG	5 cut(s)	463, 471, 673, 1109, 1179
Mva1269I	GAATGC	2 cut(s)	565, 1594
MvaI	CCWGG	6 cut(s)	203, 404, 725, 1897, 2044, 2078
MvnI	CGCG	5 cut(s)	88, 297, 321, 363, 1957
MwoI	GCNNNNNNNGC	9 cut(s)	398, 490, 673, 706, 1133, 1589, 1688, 1765, 2114
NarI	GGCGCC	2 cut(s)	78, 474
NciI	CCSGG	4 cut(s)	464, 673, 1109, 1180
NcoI	CCATGG	1 cut(s)	1712
NlaIII	CATG	8 cut(s)	85, 499, 901, 1075, 1253, 1716, 1736, 1758
NlaIV	GGNNCC	8 cut(s)	34, 35, 79, 475, 993, 994, 1760, 2034
NmeAIII	GCCGAG	2 cut(s)	521, 2086
NmuCI	GTSAC	2 cut(s)	250, 1618
NspI	RCATGY	1 cut(s)	1253
PaqCI	CACCTGC	1 cut(s)	269
PceI	AGGCCT	1 cut(s)	1875
PciI	ACATGT	1 cut(s)	1249
PcsI	WCGNNNNNNNCGW	5 cut(s)	14, 222, 276, 354, 522
PctI	GAATGC	2 cut(s)	565, 1594
PdmI	GAANNNNTTC	1 cut(s)	1856
PfeI	GAWTC	7 cut(s)	5, 467, 500, 518, 582, 1857, 2005
PflFI	GACNNNGTC	2 cut(s)	236, 278
PflMI	CCANNNNNTGG	1 cut(s)	1433
PkrI	GCNGC	9 cut(s)	177, 365, 418, 421, 492, 510, 513, 547, 1767
PleI	GAGTC	5 cut(s)	221, 446, 1784, 1921, 2081
PluTI	GGCGCC	2 cut(s)	81, 477
PmaCI	CACGTG	1 cut(s)	55
PmlI	CACGTG	1 cut(s)	55
PpsI	GAGTC	5 cut(s)	221, 446, 1784, 1921, 2081
Ppu21I	YACGTR	1 cut(s)	55
PpuMI	RGGWCCY	3 cut(s)	33, 992, 2033
PscI	ACATGT	1 cut(s)	1249
PshAI	GACNNNNGTC	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	303
Psp5II	RGGWCCY	3 cut(s)	33, 992, 2033
Psp6I	CCWGG	6 cut(s)	201, 402, 723, 1895, 2042, 2076
PspCI	CACGTG	1 cut(s)	55
PspFI	CCCAGC	2 cut(s)	153, 2056
PspGI	CCWGG	6 cut(s)	201, 402, 723, 1895, 2042, 2076
PspN4I	GGNNCC	8 cut(s)	34, 35, 79, 475, 993, 994, 1760, 2034
PspPI	GGNCC	9 cut(s)	33, 43, 133, 292, 391, 992, 1118, 1935, 2033
PspPPI	RGGWCCY	3 cut(s)	33, 992, 2033
PstNI	CAGNNNCTG	1 cut(s)	1682
PsuI	RGATCY	1 cut(s)	127
PsyI	GACNNNGTC	2 cut(s)	236, 278
RsaI	GTAC	3 cut(s)	461, 644, 896
RsaNI	GTAC	3 cut(s)	460, 643, 895
RseI	CAYNNNNRTG	2 cut(s)	570, 1967
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	6 cut(s)	24, 923, 1155, 1704, 2097, 2121
SatI	GCNGC	9 cut(s)	176, 364, 417, 420, 491, 509, 512, 546, 1766
Sau96I	GGNCC	9 cut(s)	33, 43, 133, 292, 391, 992, 1118, 1935, 2033
SchI	GAGTC	5 cut(s)	221, 446, 1784, 1921, 2082
SduI	GDGCHC	3 cut(s)	64, 303, 690
SfaNI	GCATC	5 cut(s)	114, 654, 1032, 1836, 1882
SfcI	CTRYAG	1 cut(s)	904
SfoI	GGCGCC	2 cut(s)	79, 475
SinI	GGWCC	7 cut(s)	33, 133, 292, 992, 1118, 1935, 2033
SmiMI	CAYNNNNRTG	2 cut(s)	570, 1967
SmlI	CTYRAG	1 cut(s)	2120
SmoI	CTYRAG	1 cut(s)	2120
Sse9I	AATT	8 cut(s)	424, 680, 754, 798, 911, 952, 1949, 2109
SseBI	AGGCCT	1 cut(s)	1875
SspDI	GGCGCC	2 cut(s)	77, 473
SspMI	CTAG	5 cut(s)	125, 344, 1451, 1553, 1643
SstI	GAGCTC	1 cut(s)	303
StuI	AGGCCT	1 cut(s)	1875
StyI	CCWWGG	3 cut(s)	288, 1450, 1712
TaaI	ACNGT	7 cut(s)	18, 371, 1017, 1262, 1495, 1618, 1939
TaiI	ACGT	8 cut(s)	57, 75, 240, 252, 282, 432, 639, 1290
TasI	AATT	8 cut(s)	424, 680, 754, 798, 911, 952, 1949, 2109
TatI	WGTACW	1 cut(s)	894
TauI	GCSGC	5 cut(s)	366, 422, 511, 548, 1768
TfiI	GAWTC	7 cut(s)	5, 467, 500, 518, 582, 1857, 2005
Tru1I	TTAA	6 cut(s)	24, 923, 1155, 1704, 2097, 2121
Tru9I	TTAA	6 cut(s)	24, 923, 1155, 1704, 2097, 2121
TscAI	CASTG	3 cut(s)	1069, 1353, 1644
TseFI	GTSAC	2 cut(s)	250, 1618
TseI	GCWGC	4 cut(s)	175, 416, 490, 511
Tsp45I	GTSAC	2 cut(s)	250, 1618
TspDTI	ATGAA	6 cut(s)	574, 810, 1060, 1260, 1721, 1807
TspGWI	ACGGA	6 cut(s)	83, 591, 632, 840, 1496, 1622
TspRI	CASTG	3 cut(s)	1069, 1353, 1644
Tth111I	GACNNNGTC	2 cut(s)	236, 278
Van91I	CCANNNNNTGG	1 cut(s)	1433
Vha464I	CTTAAG	1 cut(s)	2120
VpaK11BI	GGWCC	7 cut(s)	33, 133, 292, 992, 1118, 1935, 2033
XapI	RAATTY	4 cut(s)	680, 798, 952, 1949
XceI	RCATGY	1 cut(s)	1253
XmaJI	CCTAGG	1 cut(s)	1450
XmnI	GAANNNNTTC	1 cut(s)	1856
XspI	CTAG	5 cut(s)	125, 344, 1451, 1553, 1643
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.