Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Reverse (-)

23384452 .. 23384844

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32381.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCCTGGCATTACACAACAGGTGTCCCCAAAATGCAGCGCTATAAAAGGGAAGCTGTGCAAGCTCCTTCACTCATATATCCTCAAACAACCTCAGGCTACTTTAACCATCCATCTTTGTGGAACACGCAGCAACCCCTGCCGGTGCAAGGTGGTCGGCCCTACCTTGGGGTTCCTGGCCTTCGCCGCGGCGGCGGTCGTGGAGTGGCCTGTGGGGGCTGTCGTTTACATCTTCAAACACATCAAGGGTCGCCGAATCATGGCTCATCCCGCCACCGTTGTTTACCCCAAAGTTAACAATTCCATTCCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.26

Weight (kDa)

10.05

Isoelectric Point (pI)

28.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	188
AciI	CCGC	5 cut(s)	186, 188, 191, 194, 270
AfeI	AGCGCT	1 cut(s)	40
AfiI	CCNNNNNNNGG	4 cut(s)	148, 166, 167, 259
AgsI	TTSAA	1 cut(s)	235
AjnI	CCWGG	2 cut(s)	4, 174
AluBI	AGCT	2 cut(s)	55, 64
AluI	AGCT	2 cut(s)	55, 64
Aor51HI	AGCGCT	1 cut(s)	40
AoxI	GGCC	3 cut(s)	157, 177, 206
ApeKI	GCWGC	2 cut(s)	36, 129
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	158
AxyI	CCTNAGG	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	48, 141
BccI	CCATC	2 cut(s)	116, 120
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	2 cut(s)	6, 176
BfoI	RGCGCY	1 cut(s)	42
BglI	GCCNNNNNGGC	1 cut(s)	191
BisI	GCNGC	5 cut(s)	37, 130, 186, 189, 192
BlsI	GCNGC	5 cut(s)	38, 131, 187, 190, 193
Bme1390I	CCNGG	2 cut(s)	6, 176
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	2 cut(s)	6, 176
BsaJI	CCNNGG	2 cut(s)	165, 186
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 166, 167, 259
Bse118I	RCCGGY	1 cut(s)	141
Bse21I	CCTNAGG	1 cut(s)	93
BseBI	CCWGG	2 cut(s)	6, 176
BseDI	CCNNGG	2 cut(s)	165, 186
BseGI	GGATG	2 cut(s)	108, 265
BseLI	CCNNNNNNNGG	4 cut(s)	148, 166, 167, 259
BseMII	CTCAG	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	48, 141
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	3 cut(s)	159, 179, 208
BsiEI	CGRYCG	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	4 cut(s)	148, 166, 167, 259
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	3 cut(s)	159, 179, 208
BspACI	CCGC	5 cut(s)	186, 188, 191, 194, 270
BspANI	GGCC	3 cut(s)	159, 179, 208
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	165, 186
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	6, 176
Bst4CI	ACNGT	1 cut(s)	277
BstAPI	GCANNNNNTGC	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	2 cut(s)	108, 265
BstFNI	CGCG	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	5 cut(s)	61, 138, 185, 191, 269
BstNI	CCWGG	2 cut(s)	6, 176
BstSCI	CCNGG	2 cut(s)	4, 174
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	48, 141
BstXI	CCANNNNNNTGG	1 cut(s)	119
Bsu36I	CCTNAGG	1 cut(s)	93
BsuRI	GGCC	3 cut(s)	159, 179, 208
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	108, 265
Cac8I	GCNNGC	1 cut(s)	62
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	158
Cfr42I	CCGCGG	1 cut(s)	189
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	8 cut(s)	55, 64, 98, 159, 179, 208, 218, 263
CviKI_1	RGCY	8 cut(s)	55, 64, 98, 159, 179, 208, 218, 263
DdeI	CTNAG	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	165
Eco47III	AGCGCT	1 cut(s)	40
Eco81I	CCTNAGG	1 cut(s)	93
EcoRII	CCWGG	2 cut(s)	4, 174
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	1 cut(s)	262
FaiI	YATR	4 cut(s)	44, 76, 78, 260
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	1 cut(s)	258
FauI	CCCGC	1 cut(s)	277
Fnu4HI	GCNGC	5 cut(s)	37, 130, 186, 189, 192
FokI	GGATG	2 cut(s)	95, 252
Fsp4HI	GCNGC	5 cut(s)	37, 130, 186, 189, 192
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	5 cut(s)	37, 130, 186, 189, 192
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	159, 179, 208
HapII	CCGG	1 cut(s)	142
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	1 cut(s)	255
HpaI	GTTAAC	1 cut(s)	295
HpaII	CCGG	1 cut(s)	142
Hpy166II	GTNNAC	3 cut(s)	226, 283, 295
Hpy8I	GTNNAC	3 cut(s)	226, 283, 295
HpyAV	CCTTC	2 cut(s)	77, 190
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	3 cut(s)	36, 60, 147
HpyF10VI	GCNNNNNNNGC	5 cut(s)	61, 138, 185, 191, 269
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	1 cut(s)	39
KspAI	GTTAAC	1 cut(s)	295
KspI	CCGCGG	1 cut(s)	189
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	8 cut(s)	5, 18, 80, 151, 155, 161, 188, 222
Lsp1109I	GCAGC	2 cut(s)	48, 141
MboII	GAAGA	1 cut(s)	223
MluCI	AATT	1 cut(s)	298
MnlI	CCTC	2 cut(s)	92, 102
MseI	TTAA	3 cut(s)	104, 294, 313
MslI	CAYNNNNRTG	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	2 cut(s)	6, 176
MvaI	CCWGG	2 cut(s)	6, 176
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	5 cut(s)	61, 138, 185, 191, 269
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	255
PkrI	GCNGC	5 cut(s)	38, 131, 187, 190, 193
Psp6I	CCWGG	2 cut(s)	4, 174
PspGI	CCWGG	2 cut(s)	4, 174
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	117
SacII	CCGCGG	1 cut(s)	189
SaqAI	TTAA	3 cut(s)	104, 294, 313
SatI	GCNGC	5 cut(s)	37, 130, 186, 189, 192
Sau96I	GGNCC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	6, 176
SetI	ASST	6 cut(s)	24, 57, 66, 94, 153, 167
Sfr303I	CCGCGG	1 cut(s)	189
SgrBI	CCGCGG	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	298
SsiI	CCGC	5 cut(s)	186, 188, 191, 194, 270
StyD4I	CCNGG	2 cut(s)	4, 174
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	277
TasI	AATT	1 cut(s)	298
TauI	GCSGC	3 cut(s)	188, 191, 194
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	3 cut(s)	104, 294, 313
Tru9I	TTAA	3 cut(s)	104, 294, 313
TseI	GCWGC	2 cut(s)	36, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.